arXiv subjects

Gerhard Gompper

Publications and source records attributed to Gerhard Gompper.

125 records · Page 7Linked to original sources

arXiv2010

Migration of semiflexible polymers in microcapillary flow

The non-equilibrium structural and dynamical properties of a semiflexible polymer confined in a cylindrical microchannel and exposed to a Poiseuille flow is studied by mesoscale hydrodynamic simulations. For a polymer with a length half of its persistence length, large variations in orientation and conformations are found as a function of radial distance and flow strength. In particular, the polymer exhibits U-shaped conformations near the channel center. Hydrodynamic interactions lead to strong cross-streamline migration. Outward migration is governed by the polymer orientation and the corresponding anisotropy in its diffusivity. Strong tumbling motion is observed, with a tumbling time which exhibits the same dependence on Peclet number as a polymer in shear flow.

cond-mat.soft↗

arXiv2010

Effects of an embedding bulk fluid on phase separation dynamics in a thin liquid film

Using dissipative particle dynamics simulations, we study the effects of an embedding bulk fluid on the phase separation dynamics in a thin planar liquid film. The domain growth exponent is altered from 2D to 3D behavior upon the addition of a bulk fluid, even though the phase separation occurs in 2D geometry. Correlated diffusion measurements in the film show that the presence of bulk fluid changes the nature of the longitudinal coupling diffusion coefficient from logarithmic to algebraic dependence of 1/s, where s is the distance between the two particles. This result, along with the scaling exponents, suggests that the phase separation takes place through the Brownian coagulation process.

cond-mat.soft↗

arXiv2010

Dynamics of Fluid Vesicles in Flow through Structured Microchannels

The dynamics of fluid vesicles is studied under flow in microchannels, in which the width varies periodically along the channel. Three types of flow instabilities of prolate vesicles are found. For small quasi-spherical vesicles -- compared to the average channel width -- perturbation theory predicts a transition from a state with orientational oscillations of a fixed prolate shape to a state with shape oscillations of symmetrical ellipsoidal or bullet-like shapes with increasing flow velocity. Experimentally, such orientational oscillations are observed during the slow migration of a vesicle towards the centerline of the channel. For larger vesicles, mesoscale hydrodynamics simulations and experiments show similar symmetric shape oscillation at reduced volumes $V^* \gtrsim 0.9$. However, for non-spherical vesicles with $V^* \lesssim 0.9$, shapes are found with two symmetric or a single asymmetric tail.

cond-mat.soft↗

arXiv2009

Budding and vesiculation induced by conical membrane inclusions

Conical inclusions in a lipid bilayer generate an overall spontaneous curvature of the membrane that depends on concentration and geometry of the inclusions. Examples are integral and attached membrane proteins, viruses, and lipid domains. We propose an analytical model to study budding and vesiculation of the lipid bilayer membrane, which is based on the membrane bending energy and the translational entropy of the inclusions. If the inclusions are placed on a membrane with similar curvature radius, their repulsive membrane-mediated interaction is screened. Therefore, for high inclusion density the inclusions aggregate, induce bud formation, and finally vesiculation. Already with the bending energy alone our model allows the prediction of bud radii. However, in case the inclusions induce a single large vesicle to split into two smaller vesicles, bending energy alone predicts that the smaller vesicles have different sizes whereas the translational entropy favors the formation of equal-sized vesicles. Our results agree well with those of recent computer simulations.

cond-mat.soft↗

arXiv2009

Dynamical regimes and hydrodynamic lift of viscous vesicles under shear

The dynamics of two-dimensional viscous vesicles in shear flow, with different fluid viscosities $η_{\rm in}$ and $η_{\rm out}$ inside and outside, respectively, is studied using mesoscale simulation techniques. Besides the well-known tank-treading and tumbling motions, an oscillatory swinging motion is observed in the simulations for large shear rate. The existence of this swinging motion requires the excitation of higher-order undulation modes (beyond elliptical deformations) in two dimensions. Keller-Skalak theory is extended to deformable two-dimensional vesicles, such that a dynamical phase diagram can be predicted for the reduced shear rate and the viscosity contrast $η_{\rm in}/η_{\rm out}$. The simulation results are found to be in good agreement with the theoretical predictions, when thermal fluctuations are incorporated in the theory. Moreover, the hydrodynamic lift force, acting on vesicles under shear close to a wall, is determined from simulations for various viscosity contrasts. For comparison, the lift force is calculated numerically in the absence of thermal fluctuations using the boundary-integral method for equal inside and outside viscosities. Both methods show that the dependence of the lift force on the distance $y_{\rm {cm}}$ of the vesicle center of mass from the wall is well described by an effective power law $y_{\rm {cm}}^{-2}$ for intermediate distances $0.8 R_{\rm p} \lesssim y_{\rm {cm}} \lesssim 3 R_{\rm p}$ with vesicle radius $R_{\rm p}$. The boundary-integral calculation indicates that the lift force decays asymptotically as $1/[y_{\rm {cm}}\ln(y_{\rm {cm}})]$ far from the wall.

cond-mat.soft↗

arXiv2009

Self-Propelled Rods near Surfaces

We study the behavior of self-propelled nano- and micro-rods in three dimensions, confined between two parallel walls, by simulations and scaling arguments. Our simulations include thermal fluctuations and hydrodynamic interactions, which are both relevant for the dynamical behavior at nano- to micrometer length scales. In order to investigate the importance hydrodynamic interactions, we also perform Brownian-dynamics-like simulations. In both cases, we find that self-propelled rods display a strong surface excess in confined geometries. An analogy with semi-flexible polymers is employed to derive scaling laws for the dependence on the wall distance, the rod length, and the propulsive force. The simulation data confirm the scaling predictions.

physics.bio-ph↗

arXiv2008

Cooperation of Sperm in Two Dimensions: Synchronization, Attraction and Aggregation through Hydrodynamic Interactions

Sperm swimming at low Reynolds number have strong hydrodynamic interactions when their concentration is high in vivo or near substrates in vitro. The beating tails not only propel the sperm through a fluid, but also create flow fields through which sperm interact with each other. We study the hydrodynamic interaction and cooperation of sperm embedded in a two-dimensional fluid by using a particle-based mesoscopic simulation method, multi-particle collision dynamics (MPC). We analyze the sperm behavior by investigating the relationship between the beating-phase difference and the relative sperm position, as well as the energy consumption. Two effects of hydrodynamic interaction are found, synchronization and attraction. With these hydrodynamic effects, a multi-sperm system shows swarm behavior with a power-law dependence of the average cluster size on the width of the distribution of beating frequencies.

physics.bio-ph↗

arXiv2008

Direct observation of hydrodynamic instabilities in driven non-uniform colloidal dispersions

A Rayleigh-Taylor-like instability of a dense colloidal layer under gravity in a capillary of microfluidic dimensions is considered. We access all relevant lengthscales with particle-level microscopy and computer simulations which incorporate long-range hydrodynamic interactions between the particles. By tuning the gravitational driving force, we reveal a mechanism whose growth is connected to the fluctuations of specific wavelengths, non-linear pattern formation and subsequent diffusion-dominated relaxation. Our linear stability theory captures the initial regime and thus predicts mixing conditions, with important implications for fields ranging from biology to nanotechnology.

cond-mat.soft↗

arXiv2008

Transport coefficients of off-lattice mesoscale-hydrodynamics simulation techniques

The viscosity and self-diffusion constant of particle-based mesoscale hydrodynamic methods, multi-particle collision dynamics (MPC) and dissipative particle dynamics (DPD), are investigated, both with and without angular-momentum conservation. Analytical results are derived for fluids with an ideal-gas equation of state and a finite-time-step dynamics, and compared with simulation data. In particular, the viscosity is derived in a general form for all variants of the MPC method. In general, very good agreement between theory and simulations is obtained.

cond-mat.soft↗

arXiv2008

Multi-particle collision dynamics modeling of viscoelastic fluids

In order to investigate the rheological properties of viscoelastic fluids by mesoscopic hydrodynamics methods, we develop a multi-particle collision dynamics (MPC) model for a fluid of harmonic dumbbells. The algorithm consists of alternating streaming and collision steps. The advantage of the harmonic interactions is that the integration of the equations of motion in the streaming step can be performed analytically. Therefore, the algorithm is computationally as efficient as the original MPC algorithm for Newtonian fluids. The collision step is the same as in the original MPC method. All particles are confined between two solid walls moving oppositely, so that both steady and oscillatory shear flows can be investigated. Attractive wall potentials are applied to obtain a nearly uniform density everywhere in the simulation box. We find that both in steady and oscillatory shear flow, a boundary layer develops near the wall, with a higher velocity gradient than in the bulk. The thickness of this layer is proportional to the average dumbbell size. We determine the zero-shear viscosities as a function of the spring constant of the dumbbells and the mean free path. For very high shear rates, a very weak ``shear thickening'' behavior is observed. Moreover, storage and loss moduli are calculated in oscillatory shear, which show that the viscoelastic properties at low and moderate frequencies are consistent with a Maxwell fluid behavior. We compare our results with a kinetic theory of dumbbells in solution, and generally find good agreement.

cond-mat.soft↗

arXiv2007

Two-Dimensional Fluctuating Vesicles in Linear Shear Flow

The stochastic motion of a two-dimensional vesicle in linear shear flow is studied at finite temperature. In the limit of small deformations from a circle, Langevin-type equations of motion are derived, which are highly nonlinear due to the constraint of constant perimeter length. These equations are solved in the low temperature limit and using a mean field approach, in which the length constraint is satisfied only on average. The constraint imposes non-trivial correlations between the lowest deformation modes at low temperature. We also simulate a vesicle in a hydrodynamic solvent by using the multi-particle collision dynamics technique, both in the quasi-circular regime and for larger deformations, and compare the stationary deformation correlation functions and the time autocorrelation functions with theoretical predictions. Good agreement between theory and simulations is obtained.

cond-mat.soft↗

arXiv2007

Relevance of angular momentum conservation in mesoscale hydrodynamics simulations

The angular momentum is conserved in fluids with a few exceptions such as ferrofluids. However it can be violated locally in fluid simulations to reduce computational costs. The effects of this violation are investigated using a particle-based simulation method, multi-particle collision dynamics, which can switch on or off angular-momentum conservation. To this end, we study circular Couette flows between concentric and eccentric cylinders, where non-physical torques due to the lack of the angular-momentum conservation are found whereas the velocity field is not affected. In addition, in simulations of fluids with different viscosities in contact and star polymers in solvent, incorrect angular velocities occur. These results quantitatively agree with the theoretical predictions based on the macroscopic stress tensor.

cond-mat.soft↗

arXiv2007

Transport coefficients of dissipative particle dynamics with finite time step

The viscosity and self-diffusion constant of a mesoscale hydrodynamic method, dissipative particle dynamics (DPD), are investigated. The viscosity of DPD with finite time step, including the Lowe-Anderson thermostat, is derived analytically for the ideal-gas equation of state and phenomenologically for systems with soft repulsive potentials. The results agree well with numerical data. The scaling of the local relative velocity in molecular dynamics simulations is shown to be useful to obtain faster diffusion than for the DPD thermostat.

cond-mat.soft↗

arXiv2007

Free energy and extension of a semiflexible polymer in cylindrical confining geometries

We consider a long, semiflexible polymer, with persistence length $P$ and contour length $L$, fluctuating in a narrow cylindrical channel of diameter $D$. In the regime $D\ll P\ll L$ the free energy of confinement $ΔF$ and the length of the channel $R_\parallel$ occupied by the polymer are given by Odijk's relations $ΔF/R_\parallel=A_\circ k_BTP^{-1/3}D^{-2/3}$ and $R_\parallel=L[1-α_\circ(D/P)^{2/3}]$, where $A_\circ$ and $α_\circ$ are dimensionless amplitudes. Using a simulation algorithm inspired by PERM (Pruned Enriched Rosenbluth Method), which yields results for very long polymers, we determine $A_\circ$ and $α_\circ$ and the analogous amplitudes for a channel with a rectangular cross section. For a semiflexible polymer confined to the surface of a cylinder, the corresponding amplitudes are derived with an exact analytic approach. The results are relevant for interpreting experiments on biopolymers in microchannels or microfluidic devices.

cond-mat.soft↗

arXiv2006

Swinging and Tumbling of Fluid Vesicles in Shear Flow

The dynamics of fluid vesicles in simple shear flow is studied using mesoscale simulations of dynamically-triangulated surfaces, as well as a theoretical approach based on two variables, a shape parameter and the inclination angle, which has no adjustable parameters. We show that between the well-known tank-treading and tumbling states, a new ``swinging'' state can appear. We predict the dynamic phase diagram as a function of the shear rate, the viscosities of the membrane and the internal fluid, and the reduced vesicle volume. Our results agree well with recent experiments.

cond-mat.soft↗

arXiv2006

Particle-Based Mesoscale Hydrodynamic Techniques

Dissipative particle dynamics (DPD) and multi-particle collision (MPC) dynamics are powerful tools to study mesoscale hydrodynamic phenomena accompanied by thermal fluctuations. To understand the advantages of these types of mesoscale simulation techniques in more detail, we propose new two methods, which are intermediate between DPD and MPC -- DPD with a multibody thermostat (DPD-MT), and MPC-Langevin dynamics (MPC-LD). The key features are applying a Langevin thermostat to the relative velocities of pairs of particles or multi-particle collisions, and whether or not to employ collision cells. The viscosity of MPC-LD is derived analytically, in very good agreement with the results of numerical simulations.

cond-mat.soft↗

arXiv2004

Fluid Vesicles with Viscous Membranes in Shear Flow

The effect of membrane viscosity on the dynamics of vesicles in shear flow is studied. We present a new simulation technique, which combines three-dimensional multi-particle collision dynamics for the solvent with a dynamically-triangulated membrane model. Vesicles are found to transit from steady tank-treading to unsteady tumbling motion with increasing membrane viscosity. Depending on the reduced volume and membrane viscosity, shear can induce both discocyte-to-prolate and prolate-to-discocyte transformations. This dynamical behavior can be understood from a simplified model.

cond-mat.soft↗