arXiv subjects

Gilberto Ochoa-Ruiz

Publications and source records attributed to Gilberto Ochoa-Ruiz.

At least 19 recordsLinked to original sources

arXiv2026

LUX: A Lesion-Aware Graph-Conditioned Visual - Language Architecture for Explainable Endoscopic Captioning

The interpretation of endoscopic imagery in ulcerative colitis is complex and subjective, with variability in human assessment and subtle mucosal inflammation. Although deep learning has advanced automated analysis, most vision-language models rely on global visual embeddings that overlook the localized and relational nature of pathological evidence, limiting clinical reliability and interpretability. We introduce LUX (Lesion-aware Unified eXplainable captioning), a graph-conditioned vision-language architecture for explainable endoscopic image captioning. LUX constructs a lesion-centric scene graph from Grad-CAM and CBAM activation maps, representing pathological regions as nodes and encoding their spatial and clinical relationships. These graph embeddings are integrated into the cross-attention layers of a T5 decoder, enabling generated words to attend to specific lesion nodes rather than only to global image features. This provides direct alignment between linguistic content and pathological evidence, supporting token-level interpretability and relational reasoning. LUX outperforms strong baseline and state-of-the-art medical captioning models across BLEU, METEOR, ROUGE-L, and CIDEr, with particularly strong gains in CIDEr. It also reduces hallucinated clinical findings and improves lesion-level grounding through stronger correspondence between generated tokens and localized pathological regions.

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arXiv2026

FedAgain: A Trust-Based and Robust Federated Learning Strategy for an Automated Kidney Stone Identification in Ureteroscopy

The reliability of artificial intelligence (AI) in medical imaging critically depends on its robustness to heterogeneous and corrupted images acquired with diverse devices across different hospitals which is highly challenging. Therefore, this paper introduces FedAgain, a trust-based Federated Learning (Federated Learning) strategy designed to enhance robustness and generalization for automated kidney stone identification from endoscopic images. FedAgain integrates a dual trust mechanism that combines benchmark reliability and model divergence to dynamically weight client contributions, mitigating the impact of noisy or adversarial updates during aggregation. The framework enables the training of collaborative models across multiple institutions while preserving data privacy and promoting stable convergence under real-world conditions. Extensive experiments across five datasets, including two canonical benchmarks (MNIST and CIFAR-10), two private multi-institutional kidney stone datasets, and one public dataset (MyStone), demonstrate that FedAgain consistently outperforms standard Federated Learning baselines under non-identically and independently distributed (non-IID) data and corrupted-client scenarios. By maintaining diagnostic accuracy and performance stability under varying conditions, FedAgain represents a practical advance toward reliable, privacy-preserving, and clinically deployable federated AI for medical imaging.

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arXiv2026

A reconfigurable smart camera implementation for jet flames characterization based on an optimized segmentation model

In this work we present a novel framework for fire safety management in industrial settings through the implementation of a smart camera platform for jet flames characterization. The approach seeks to alleviate the lack of real-time solutions for industrial early fire segmentation and characterization. As a case study, we demonstrate how a SoC FPGA, running optimized Artificial Intelligence (AI) models can be leveraged to implement a full edge processing pipeline for jet flames analysis. In this paper we extend previous work on computer-vision jet fire segmentation by creating a novel experimental set-up and system implementation for addressing this issue, which can be replicated to other fire safety applications. The proposed platform is designed to carry out image processing tasks in real-time and on device, reducing video processing overheads, and thus the overall latency. This is achieved by optimizing a UNet segmentation model to make it amenable for an SoC FPGAs implementation; the optimized model can then be efficiently mapped onto the SoC reconfigurable logic for massively parallel execution. For our experiments, we have chosen the Ultra96 platform, as it also provides the means for implementing full-fledged intelligent systems using the SoC peripherals, as well as other Operating System (OS) capabilities (i.e., multi-threading) for systems management. For optimizing the model we made use of the Vitis (Xilinx) framework, which enabled us to optimize the full precision model from 7.5 million parameters to 59,095 parameters (125x less), which translated into a reduction of the processing latency of 2.9x. Further optimization (multi-threading and batch normalization) led to an improvement of 7.5x in terms of latency, yielding a performance of 30 Frames Per Second (FPS) without sacrificing accuracy in terms of the evaluated metrics (Dice Score).

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arXiv2026

A comprehensive multimodal dataset and benchmark for ulcerative colitis scoring in endoscopy

Ulcerative colitis (UC) is a chronic mucosal inflammatory condition that places patients at increased risk of colorectal cancer. Colonoscopic surveillance remains the gold standard for assessing disease activity, and reporting typically relies on standardised endoscopic scoring metrics. The most widely used is the Mayo Endoscopic Score (MES), with some centres also adopting the Ulcerative Colitis Endoscopic Index of Severity (UCEIS). Both are descriptive assessments of mucosal inflammation (MES: 0 to 3; UCEIS: 0 to 8), where higher values indicate more severe disease. However, computational methods for automatically predicting these scores remain limited, largely due to the lack of publicly available expert-annotated datasets and the absence of robust benchmarking. There is also a significant research gap in generating clinically meaningful descriptions of UC images, despite image captioning being a well-established computer vision task. Variability in endoscopic systems and procedural workflows across centres further highlights the need for multi-centre datasets to ensure algorithmic robustness and generalisability. In this work, we introduce a curated multi-centre, multi-resolution dataset that includes expert-validated MES and UCEIS labels, alongside detailed clinical descriptions. To our knowledge, this is the first comprehensive dataset that combines dual scoring metrics for classification tasks with expert-generated captions describing mucosal appearance and clinically accepted reasoning for image captioning. This resource opens new opportunities for developing clinically meaningful multimodal algorithms. In addition to the dataset, we also provide benchmarking using convolutional neural networks, vision transformers, hybrid models, and widely used multimodal vision-language captioning algorithms.

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arXiv2025

RobustSurg: Tackling domain generalisation for out-of-distribution surgical scene segmentation

While recent advances in deep learning for surgical scene segmentation have demonstrated promising results on single-centre and single-imaging modality data, these methods usually do not generalise to unseen distribution (i.e., from other centres) and unseen modalities. Current literature for tackling generalisation on out-of-distribution data and domain gaps due to modality changes has been widely researched but mostly for natural scene data. However, these methods cannot be directly applied to the surgical scenes due to limited visual cues and often extremely diverse scenarios compared to the natural scene data. Inspired by these works in natural scenes to push generalisability on OOD data, we hypothesise that exploiting the style and content information in the surgical scenes could minimise the appearances, making it less variable to sudden changes such as blood or imaging artefacts. This can be achieved by performing instance normalisation and feature covariance mapping techniques for robust and generalisable feature representations. Further, to eliminate the risk of removing salient feature representation associated with the objects of interest, we introduce a restitution module within the feature learning ResNet backbone that can enable the retention of useful task-relevant features. To tackle the lack of multiclass and multicentre data for surgical scene segmentation, we also provide a newly curated dataset that can be vital for addressing generalisability in this domain. Our proposed RobustSurg obtained nearly 23% improvement on the baseline DeepLabv3+ and from 10-32% improvement on the SOTA in terms of mean IoU score on an unseen centre HeiCholSeg dataset when trained on CholecSeg8K. Similarly, RobustSurg also obtained nearly 22% improvement over the baseline and nearly 11% improvement on a recent SOTA method for the target set of the EndoUDA polyp dataset.

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arXiv2025

Robust Federated Anomaly Detection Using Dual-Signal Autoencoders: Application to Kidney Stone Identification in Ureteroscopy

This work introduces Federated Adaptive Gain via Dual Signal Trust (FedAgain), a novel federated learning algorithm designed to enhance anomaly detection in medical imaging under decentralized and heterogeneous conditions. Focusing on the task of kidney stone classification, FedAgain addresses the common challenge of corrupted or low-quality client data in real-world clinical environments by implementing a dual-signal trust mechanism based on reconstruction error and model divergence. This mechanism enables the central server to dynamically down-weight updates from untrustworthy clients without accessing their raw data, thereby preserving both model integrity and data privacy. FedAgain employs deep convolutional autoencoders trained in two diverse kidney stone datasets and is evaluated in 16 types of endoscopy-specific corruption at five severity levels. Extensive experiments demonstrate that FedAgain effectively suppresses "expert forger" clients, enhances robustness to image corruptions, and offers a privacy-preserving solution for collaborative medical anomaly detection. Compared to traditional FedAvg, FedAgain achieves clear improvements in all 16 types of corruption, with precision gains of up to +14.49\% and F1 score improvements of up to +10.20\%, highlighting its robustness and effectiveness in challenging imaging scenarios.

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arXiv2025

Vision Transformers for Kidney Stone Image Classification: A Comparative Study with CNNs

Kidney stone classification from endoscopic images is critical for personalized treatment and recurrence prevention. While convolutional neural networks (CNNs) have shown promise in this task, their limited ability to capture long-range dependencies can hinder performance under variable imaging conditions. This study presents a comparative analysis between Vision Transformers (ViTs) and CNN-based models, evaluating their performance on two ex vivo datasets comprising CCD camera and flexible ureteroscope images. The ViT-base model pretrained on ImageNet-21k consistently outperformed a ResNet50 baseline across multiple imaging conditions. For instance, in the most visually complex subset (Section patches from endoscopic images), the ViT model achieved 95.2% accuracy and 95.1% F1-score, compared to 64.5% and 59.3% with ResNet50. In the mixed-view subset from CCD-camera images, ViT reached 87.1% accuracy versus 78.4% with CNN. These improvements extend across precision and recall as well. The results demonstrate that ViT-based architectures provide superior classification performance and offer a scalable alternative to conventional CNNs for kidney stone image analysis.

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arXiv2025

Evaluation of Few-Shot Learning Methods for Kidney Stone Type Recognition in Ureteroscopy

Determining the type of kidney stones is crucial for prescribing appropriate treatments to prevent recurrence. Currently, various approaches exist to identify the type of kidney stones. However, obtaining results through the reference ex vivo identification procedure can take several weeks, while in vivo visual recognition requires highly trained specialists. For this reason, deep learning models have been developed to provide urologists with an automated classification of kidney stones during ureteroscopies. Nevertheless, a common issue with these models is the lack of training data. This contribution presents a deep learning method based on few-shot learning, aimed at producing sufficiently discriminative features for identifying kidney stone types in endoscopic images, even with a very limited number of samples. This approach was specifically designed for scenarios where endoscopic images are scarce or where uncommon classes are present, enabling classification even with a limited training dataset. The results demonstrate that Prototypical Networks, using up to 25% of the training data, can achieve performance equal to or better than traditional deep learning models trained with the complete dataset.

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arXiv2025

Assessing the generalization performance of SAM for ureteroscopy scene understanding

The segmentation of kidney stones is regarded as a critical preliminary step to enable the identification of urinary stone types through machine- or deep-learning-based approaches. In urology, manual segmentation is considered tedious and impractical due to the typically large scale of image databases and the continuous generation of new data. In this study, the potential of the Segment Anything Model (SAM) -- a state-of-the-art deep learning framework -- is investigated for the automation of kidney stone segmentation. The performance of SAM is evaluated in comparison to traditional models, including U-Net, Residual U-Net, and Attention U-Net, which, despite their efficiency, frequently exhibit limitations in generalizing to unseen datasets. The findings highlight SAM's superior adaptability and efficiency. While SAM achieves comparable performance to U-Net on in-distribution data (Accuracy: 97.68 + 3.04; Dice: 97.78 + 2.47; IoU: 95.76 + 4.18), it demonstrates significantly enhanced generalization capabilities on out-of-distribution data, surpassing all U-Net variants by margins of up to 23 percent.

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arXiv2024

Tackling domain generalization for out-of-distribution endoscopic imaging

While recent advances in deep learning (DL) for surgical scene segmentation have yielded promising results on single-center and single-imaging modality data, these methods usually do not generalize well to unseen distributions or modalities. Even though human experts can identify visual appearances, DL methods often fail to do so when data samples do not follow a similar distribution. Current literature addressing domain gaps in modality changes has focused primarily on natural scene data. However, these methods cannot be directly applied to endoscopic data, as visual cues in such data are more limited compared to natural scenes. In this work, we exploit both style and content information in images by performing instance normalization and feature covariance mapping techniques to preserve robust and generalizable feature representations. Additionally, to avoid the risk of removing salient feature representations associated with objects of interest, we introduce a restitution module within the feature-learning ResNet backbone that retains useful task-relevant features. Our proposed method shows a 13.7% improvement over the baseline DeepLabv3+ and nearly an 8% improvement over recent state-of-the-art (SOTA) methods for the target (different modality) set of the EndoUDA polyp dataset. Similarly, our method achieved a 19% improvement over the baseline and 6% over the best-performing SOTA method on the EndoUDA Barrett's esophagus (BE) dataset.

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arXiv2024

EndoDepth: A Benchmark for Assessing Robustness in Endoscopic Depth Prediction

Accurate depth estimation in endoscopy is vital for successfully implementing computer vision pipelines for various medical procedures and CAD tools. In this paper, we present the EndoDepth benchmark, an evaluation framework designed to assess the robustness of monocular depth prediction models in endoscopic scenarios. Unlike traditional datasets, the EndoDepth benchmark incorporates common challenges encountered during endoscopic procedures. We present an evaluation approach that is consistent and specifically designed to evaluate the robustness performance of the model in endoscopic scenarios. Among these is a novel composite metric called the mean Depth Estimation Robustness Score (mDERS), which offers an in-depth evaluation of a model's accuracy against errors brought on by endoscopic image corruptions. Moreover, we present SCARED-C, a new dataset designed specifically to assess endoscopy robustness. Through extensive experimentation, we evaluate state-of-the-art depth prediction architectures on the EndoDepth benchmark, revealing their strengths and weaknesses in handling endoscopic challenging imaging artifacts. Our results demonstrate the importance of specialized techniques for accurate depth estimation in endoscopy and provide valuable insights for future research directions.

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arXiv2024

Leveraging Pre-trained Models for Robust Federated Learning for Kidney Stone Type Recognition

Deep learning developments have improved medical imaging diagnoses dramatically, increasing accuracy in several domains. Nonetheless, obstacles continue to exist because of the requirement for huge datasets and legal limitations on data exchange. A solution is provided by Federated Learning (FL), which permits decentralized model training while maintaining data privacy. However, FL models are susceptible to data corruption, which may result in performance degradation. Using pre-trained models, this research suggests a strong FL framework to improve kidney stone diagnosis. Two different kidney stone datasets, each with six different categories of images, are used in our experimental setting. Our method involves two stages: Learning Parameter Optimization (LPO) and Federated Robustness Validation (FRV). We achieved a peak accuracy of 84.1% with seven epochs and 10 rounds during LPO stage, and 77.2% during FRV stage, showing enhanced diagnostic accuracy and robustness against image corruption. This highlights the potential of merging pre-trained models with FL to address privacy and performance concerns in medical diagnostics, and guarantees improved patient care and enhanced trust in FL-based medical systems.

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arXiv2024

Evaluating the plausibility of synthetic images for improving automated endoscopic stone recognition

Currently, the Morpho-Constitutional Analysis (MCA) is the de facto approach for the etiological diagnosis of kidney stone formation, and it is an important step for establishing personalized treatment to avoid relapses. More recently, research has focused on performing such tasks intra-operatively, an approach known as Endoscopic Stone Recognition (ESR). Both methods rely on features observed in the surface and the section of kidney stones to separate the analyzed samples into several sub-groups. However, given the high intra-observer variability and the complex operating conditions found in ESR, there is a lot of interest in using AI for computer-aided diagnosis. However, current AI models require large datasets to attain a good performance and for generalizing to unseen distributions. This is a major problem as large labeled datasets are very difficult to acquire, and some classes of kidney stones are very rare. Thus, in this paper, we present a method based on diffusion as a way of augmenting pre-existing ex-vivo kidney stone datasets. Our aim is to create plausible diverse kidney stone images that can be used for pre-training models using ex-vivo data. We show that by mixing natural and synthetic images of CCD images, it is possible to train models capable of performing very well on unseen intra-operative data. Our results show that is possible to attain an improvement of 10% in terms of accuracy compared to a baseline model pre-trained only on ImageNet. Moreover, our results show an improvement of 6% for surface images and 10% for section images compared to a model train on CCD images only, which demonstrates the effectiveness of using synthetic images.

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arXiv2024

Improving Prototypical Parts Abstraction for Case-Based Reasoning Explanations Designed for the Kidney Stone Type Recognition

The in-vivo identification of the kidney stone types during an ureteroscopy would be a major medical advance in urology, as it could reduce the time of the tedious renal calculi extraction process, while diminishing infection risks. Furthermore, such an automated procedure would make possible to prescribe anti-recurrence treatments immediately. Nowadays, only few experienced urologists are able to recognize the kidney stone types in the images of the videos displayed on a screen during the endoscopy. Thus, several deep learning (DL) models have recently been proposed to automatically recognize the kidney stone types using ureteroscopic images. However, these DL models are of black box nature whicl limits their applicability in clinical settings. This contribution proposes a case-based reasoning DL model which uses prototypical parts (PPs) and generates local and global descriptors. The PPs encode for each class (i.e., kidney stone type) visual feature information (hue, saturation, intensity and textures) similar to that used by biologists. The PPs are optimally generated due a new loss function used during the model training. Moreover, the local and global descriptors of PPs allow to explain the decisions ("what" information, "where in the images") in an understandable way for biologists and urologists. The proposed DL model has been tested on a database including images of the six most widespread kidney stone types. The overall average classification accuracy was 90.37. When comparing this results with that of the eight other DL models of the kidney stone state-of-the-art, it can be seen that the valuable gain in explanability was not reached at the expense of accuracy which was even slightly increased with respect to that (88.2) of the best method of the literature. These promising and interpretable results also encourage urologists to put their trust in AI-based solutions.

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arXiv2024

Domain Generalization for Endoscopic Image Segmentation by Disentangling Style-Content Information and SuperPixel Consistency

Frequent monitoring is necessary to stratify individuals based on their likelihood of developing gastrointestinal (GI) cancer precursors. In clinical practice, white-light imaging (WLI) and complementary modalities such as narrow-band imaging (NBI) and fluorescence imaging are used to assess risk areas. However, conventional deep learning (DL) models show degraded performance due to the domain gap when a model is trained on one modality and tested on a different one. In our earlier approach, we used a superpixel-based method referred to as "SUPRA" to effectively learn domain-invariant information using color and space distances to generate groups of pixels. One of the main limitations of this earlier work is that the aggregation does not exploit structural information, making it suboptimal for segmentation tasks, especially for polyps and heterogeneous color distributions. Therefore, in this work, we propose an approach for style-content disentanglement using instance normalization and instance selective whitening (ISW) for improved domain generalization when combined with SUPRA. We evaluate our approach on two datasets: EndoUDA Barrett's Esophagus and EndoUDA polyps, and compare its performance with three state-of-the-art (SOTA) methods. Our findings demonstrate a notable enhancement in performance compared to both baseline and SOTA methods across the target domain data. Specifically, our approach exhibited improvements of 14%, 10%, 8%, and 18% over the baseline and three SOTA methods on the polyp dataset. Additionally, it surpassed the second-best method (EndoUDA) on the Barrett's Esophagus dataset by nearly 2%.

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arXiv2023

An FPGA smart camera implementation of segmentation models for drone wildfire imagery

Wildfires represent one of the most relevant natural disasters worldwide, due to their impact on various societal and environmental levels. Thus, a significant amount of research has been carried out to investigate and apply computer vision techniques to address this problem. One of the most promising approaches for wildfire fighting is the use of drones equipped with visible and infrared cameras for the detection, monitoring, and fire spread assessment in a remote manner but in close proximity to the affected areas. However, implementing effective computer vision algorithms on board is often prohibitive since deploying full-precision deep learning models running on GPU is not a viable option, due to their high power consumption and the limited payload a drone can handle. Thus, in this work, we posit that smart cameras, based on low-power consumption field-programmable gate arrays (FPGAs), in tandem with binarized neural networks (BNNs), represent a cost-effective alternative for implementing onboard computing on the edge. Herein we present the implementation of a segmentation model applied to the Corsican Fire Database. We optimized an existing U-Net model for such a task and ported the model to an edge device (a Xilinx Ultra96-v2 FPGA). By pruning and quantizing the original model, we reduce the number of parameters by 90%. Furthermore, additional optimizations enabled us to increase the throughput of the original model from 8 frames per second (FPS) to 33.63 FPS without loss in the segmentation performance: our model obtained 0.912 in Matthews correlation coefficient (MCC),0.915 in F1 score and 0.870 in Hafiane quality index (HAF), and comparable qualitative segmentation results when contrasted to the original full-precision model. The final model was integrated into a low-cost FPGA, which was used to implement a neural network accelerator.

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arXiv2023

FAU-Net: An Attention U-Net Extension with Feature Pyramid Attention for Prostate Cancer Segmentation

This contribution presents a deep learning method for the segmentation of prostate zones in MRI images based on U-Net using additive and feature pyramid attention modules, which can improve the workflow of prostate cancer detection and diagnosis. The proposed model is compared to seven different U-Net-based architectures. The automatic segmentation performance of each model of the central zone (CZ), peripheral zone (PZ), transition zone (TZ) and Tumor were evaluated using Dice Score (DSC), and the Intersection over Union (IoU) metrics. The proposed alternative achieved a mean DSC of 84.15% and IoU of 76.9% in the test set, outperforming most of the studied models in this work except from R2U-Net and attention R2U-Net architectures.

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arXiv2023

On the in vivo recognition of kidney stones using machine learning

Determining the type of kidney stones allows urologists to prescribe a treatment to avoid recurrence of renal lithiasis. An automated in-vivo image-based classification method would be an important step towards an immediate identification of the kidney stone type required as a first phase of the diagnosis. In the literature it was shown on ex-vivo data (i.e., in very controlled scene and image acquisition conditions) that an automated kidney stone classification is indeed feasible. This pilot study compares the kidney stone recognition performances of six shallow machine learning methods and three deep-learning architectures which were tested with in-vivo images of the four most frequent urinary calculi types acquired with an endoscope during standard ureteroscopies. This contribution details the database construction and the design of the tested kidney stones classifiers. Even if the best results were obtained by the Inception v3 architecture (weighted precision, recall and F1-score of 0.97, 0.98 and 0.97, respectively), it is also shown that choosing an appropriate colour space and texture features allows a shallow machine learning method to approach closely the performances of the most promising deep-learning methods (the XGBoost classifier led to weighted precision, recall and F1-score values of 0.96). This paper is the first one that explores the most discriminant features to be extracted from images acquired during ureteroscopies.

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