arXiv subjects

Giles Blaney

Publications and source records attributed to Giles Blaney.

9 recordsLinked to original sources

arXiv2025

Functional dual-slope frequency-domain near-infrared spectroscopy data interpreted with two- and three-layer models

Functional near-infrared spectroscopy (fNIRS) is impacted by signal contamination from superficial hemodynamics. It is important to develop methods that account for such contamination and provide accurate measurements of cerebral hemodynamics. This work aims to investigate whether simulated data with two-layer or three-layer tissue models are able to reproduce in vivo data collected with dual-slope (DS) frequency-domain (FD) near-infrared spectroscopy (NIRS) on human subjects during brain activation. We performed Monte Carlo simulations to generate DS FD-NIRS data from two- and three-layer media with a range of layer thicknesses and optical properties. We collected in vivo data with DS FD-NIRS (source-detector distances: 25, 37 mm; wavelengths: 690, 830 nm; modulation frequency: 140 MHz) over the occipital lobe of human subjects during visual stimulation. Simulated and in vivo data were analyzed with diffusion theory for a homogeneous medium and results were compared for each DS FD-NIRS data type. We found that the main qualitative features of in vivo data could be reproduced by simulated data from a three-layer medium, with a second layer (representing the cerebrospinal fluid in the subarachnoid space) that is less absorbing and less scattering than the other two layers, and with a top layer thickness that represents the combined scalp and skull thickness. A three-layer model is a viable improvement over a homogeneous model to analyze DS FD-NIRS data (or any other fNIRS data) to generate more accurate measurements of cerebral hemodynamic changes without a need for large data sets for tomographic reconstructions.

physics.med-ph↗

arXiv2025

Neural and Cognitive Impacts of AI: The Influence of Task Subjectivity on Human-LLM Collaboration

AI-based interactive assistants are advancing human-augmenting technology, yet their effects on users' mental and physiological states remain under-explored. We address this gap by analyzing how Copilot for Microsoft Word, a LLM-based assistant, impacts users. Using tasks ranging from objective (SAT reading comprehension) to subjective (personal reflection), and with measurements including fNIRS, Empatica E4, NASA-TLX, and questionnaires, we measure Copilot's effects on users. We also evaluate users' performance with and without Copilot across tasks. In objective tasks, participants reported a reduction of workload and an increase in enjoyment, which was paired with objective performance increases. Participants reported reduced workload and increased enjoyment with no change in performance in a creative poetry writing task. However, no benefits due to Copilot use were reported in a highly subjective self-reflection task. Although no physiological changes were recorded due to Copilot use, task-dependent differences in prefrontal cortex activation offer complementary insights into the cognitive processes associated with successful and unsuccessful human-AI collaboration. These findings suggest that AI assistants' effectiveness varies with task type-particularly showing decreased usefulness in tasks that engage episodic memory-and presents a brain-network based hypothesis of human-AI collaboration.

cs.HC↗

arXiv2025

Influence of Uncertainties in Optode Positions on Self-Calibrating or Dual-Slope Diffuse Optical Measurements

Self-calibrating and dual-slope measurements have been used in the field of diffuse optics for robust assessment of absolute values or temporal changes in the optical properties of highly scattering media and biological tissue. These measurements employ optical probes with a minimum of two source positions and a minimum of two detector positions. This work focuses on a quantitative analysis of the impact of errors in these source and detector positions on the assessment of optical properties. We considered linear, trapezoidal, and rectangular optode arrangements and theoretical computations based on diffusion theory for semi-infinite homogeneous media. We found that uncertainties in optodes' positions may have a greater impact on measurements of absolute scattering versus absorption coefficients. For example, 4.1% and 19% average errors in absolute absorption and scattering, respectively, can be expected by displacing every optode in a linear arrangement by 1 mm in any direction. The impact of optode position errors is typically smaller for measurements of absorption changes. For each geometrical arrangement (linear, trapezoid, rectangular), we identify the direction of the position uncertainty for each optode that has minimal impact on the optical measurements. These results can guide the optimal design of optical probes for self-calibrating and dual-slope measurements.

physics.optics↗

arXiv2024

Dual-ratio approach to pulse oximetry and the effect of skin tone

Significance: Pulsatile blood Oxygen Saturation (SpO2 ) via pulse oximetry is a valuable clinical metric for assessing oxygen delivery. Individual anatomical features, including skin tone, may affect current optical pulse oximetry methods. Aim: Develop an optical pulse oximetry method based on Dual-Ratio (DR) measurements to suppress individual anatomical features on SpO2. Approach: Design a DR-based finger pulse oximeter, hypothesizing that DR would suppress confounds from optical coupling and superficial tissue-absorption. This method is tested using Monte Carlo (MC) simulations and in vivo experiments. Results: Different melanosome volume fraction in the epidermis, a surrogate for skin tone, cause changes in the recovered SpO2 on the order of 1%. Different heterogeneous pulsatile hemodynamics cause greater changes on the order of 10%. SpO2 recovered with DR measurements showed less variability than the traditional Single-Distance (SD) transmission method. Conclusions: For the models and methods considered here, SpO2 measurements are more strongly impacted by heterogeneous pulsatile hemodynamics than by melanosome volume fraction. This is consistent with previous reports that, the skin tone bias is smaller than the observed variation in recovered SpO 2 across individual people. The partial suppression of variability in the SpO2 recovered by DR suggests promise of DR for pulse oximetry.

physics.med-ph↗

arXiv2023

Spatial Sensitivity to Absorption Changes for Various Near-Infrared Spectroscopy Methods: A Compendium Review

This compendium review focuses on the spatial distribution of sensitivity to localized absorption changes in optically diffuse media, particularly for measurements relevant to near-infrared spectroscopy. The three temporal domains, continuous-wave, frequency-domain, and time-domain, each obtain different optical data-types whose changes may be related to effective homogeneous changes in the absorption coefficient. Sensitivity is the relationship between a localized perturbation and the recovered effective homogeneous absorption change. Therefore, spatial sensitivity maps representing the perturbation location can be generated for the numerous optical data-types in the three temporal domains. The review first presents a history of the past 30 years of work investigating this sensitivity in optically diffuse media. These works are experimental and theoretical, presenting 1-, 2-, and 3-dimensional sensitivity maps for different near-infrared spectroscopy methods, domains, and data-types. Following this history, we present a compendium of sensitivity maps organized by temporal domain and then data-type. This compendium provides a valuable tool to compare the spatial sensitivity of various measurement methods and parameters in one document. Methods for one to generate these maps are provided in the appendix, including code. This historical review and comprehensive sensitivity map compendium provides a single source researchers may use to visualize, investigate, compare, and generate sensitivity to localized absorption change maps.

physics.ins-det↗

arXiv2023

Dual-ratio approach for detection of point fluorophores in biological tissue

Significance: Diffuse in-vivo Flow Cytometry (DiFC) is an emerging fluorescence sensing method to non-invasively detect labeled circulating cells in-vivo. However, due to Signal-to-Noise Ratio (SNR) constraints largely attributed to background tissue autofluorescence, DiFC's measurement depth is limited. multiplies Aim: The Dual-Ratio (DR) / dual-slope is a new optical measurement method that aims to suppress noise and enhance SNR to deep tissue regions. We aim to investigate the combination of DR and Near-InfraRed (NIR) DiFC to improve circulating cells' maximum detectable depth and SNR. Approach: Phantom experiments were used to estimate the key parameters in a diffuse fluorescence excitation and emission model. This model and parameters were implemented in Monte-Carlo to simulate DR DiFC while varying noise and autofluorescence parameters to identify the advantages and limitations of the proposed technique. Results: Two key factors must be true to give DR DiFC an advantage over traditional DiFC; first, the fraction of noise that DR methods cannot cancel cannot be above the order of 10% for acceptable SNR. Second, DR DiFC has an advantage, in terms of SNR, if the distribution of tissue autofluorescence contributors is surface-weighted. Conclusions: DR cancelable noise may be designed for (e.g. through the use of source multiplexing), and indications point to the autofluorescence contributors' distribution being truly surface-weighted in-vivo. Successful and worthwhile implementation of DR DiFC depends on these considerations, but results point to DR DiFC having possible advantages over traditional DiFC.

physics.med-ph↗

arXiv2023

Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy

Significance: This work targets the contamination of optical signals by superficial hemodynamics, which is one of the chief hurdles in non-invasive optical measurements of the human brain. Aim: To identify optimal source-detector distances for Dual-Slope (DS) measurements in Frequency-Domain (FD) Near-InfraRed Spectroscopy (NIRS) and demonstrate preferential sensitivity of Dual-Slope (DS) imaging to deeper tissue (brain) versus superficial tissue (scalp). Approach: Theoretical studies (in-silico) based on diffusion theory in two-layered and in homogeneous scattering media. In-vivo demonstrations of DS imaging of the human brain during visual stimulation and during systemic blood pressure oscillations. Results: The mean distance (between the two source-detector distances needed for DS) is the key factor for depth sensitivity. In-vivo imaging of the human occipital lobe with FD NIRS and a mean distance of 31 mm indicated: (1) greater hemodynamic response to visual stimulation from FD phase versus intensity, and from DS versus Single-Distance (SD); (2) hemodynamics from FD phase and DS mainly driven by blood flow, and hemodynamics from SD intensity mainly driven by blood volume. Conclusions: DS imaging with FD NIRS may suppress confounding contributions from superficial hemodynamics without relying on data at short source-detector distances. This capability can have significant implications for non-invasive optical measurements of the human brain.

physics.med-ph↗

arXiv2022

Method for Measuring Absolute Optical Properties of Turbid Samples in a Standard Cuvette

Many applications seek to measure a sample's absorption coefficient spectrum to retrieve the chemical makeup. Many real world samples are optically turbid, causing scattering confounds which many commercial spectrometers cannot address. Using diffusion theory and considering absorption and reduced scattering coefficients on the order of 0.01 per mm and 1 per mm, respectively, we develop a method which utilizes frequency-domain to measure absolute optical properties of turbid samples in a standard cuvette (45 mm by 10 mm by 10 mm). Inspired by the self calibrating method, which removes instrumental confounds, the method uses measurements of the diffuse complex transmittance at two sets of two different source-detector distances. We find: this works best for highly scattering samples (reduced scattering coefficient above 1 per mm); higher relative error in the absorption coefficient compared to the reduced scattering coefficient; accuracy is tied to knowledge of the samples index of refraction. Noise simulations with 0.1 percent amplitude and 0.1 deg (1.7 mrad) phase uncertainty find errors in absorption and reduced scattering coefficients of 4 percent and 1 percent, respectively. We expect that higher error in the absorption coefficient can be alleviated with highly scattering samples and that boundary condition confounds may be suppressed by designing a cuvette with high index of refraction. Further work will investigate implementation and reproducibility.

physics.optics↗

arXiv2020

Domain Adaptation for Robust Workload Level Alignment Between Sessions and Subjects using fNIRS

Significance: We demonstrated the potential of using domain adaptation on functional Near-Infrared Spectroscopy (fNIRS) data to classify different levels of n-back tasks that involve working memory. Aim: Domain shift in fNIRS data is a challenge in the workload level alignment across different experiment sessions and subjects. In order to address this problem, two domain adaptation approaches -- Gromov-Wasserstein (G-W) and Fused Gromov-Wasserstein (FG-W) were used. Approach: Specifically, we used labeled data from one session or one subject to classify trials in another session (within the same subject) or another subject. We applied G-W for session-by-session alignment and FG-W for subject-by-subject alignment to fNIRS data acquired during different n-back task levels. We compared these approaches with three supervised methods: multi-class Support Vector Machine (SVM), Convolutional Neural Network (CNN), and Recurrent Neural Network (RNN). Results: In a sample of six subjects, G-W resulted in an alignment accuracy of 68 $\pm$ 4 % (weighted mean $\pm$ standard error) for session-by-session alignment, FG-W resulted in an alignment accuracy of 55 $\pm$ 2 % for subject-by-subject alignment. In each of these cases, 25 % accuracy represents chance. Alignment accuracy results from both G-W and FG-W are significantly greater than those from SVM, CNN and RNN. We also showed that removal of motion artifacts from the fNIRS data plays an important role in improving alignment performance. Conclusions: Domain adaptation has potential for session-by-session and subject-by-subject alignment of mental workload by using fNIRS data.

cs.CV↗