arXiv subjects

Gino Del Ferraro

Publications and source records attributed to Gino Del Ferraro.

14 recordsLinked to original sources

arXiv2020

Monolingual and bilingual language networks in healthy subjects using functional MRI and graph theory

Pre-surgical language mapping with functional magnetic resonance imaging (fMRI) is routinely conducted to assist the neurosurgeon in preventing damage to brain regions responsible for language. Functional differences exist between the monolingual versus the bilingual brain, whereas clinical fMRI tasks are typically conducted in a single language. The presence of secondary language processing mechanisms is a potential source of error in the inferred language map. From fMRI data of healthy bilingual and monolingual subjects we obtain language maps as functional networks. Our results show a sub-network "core" architecture consisting of the Broca's, pre-supplementary motor, and premotor areas present across all subjects. Wernicke's Area was found to connect to the "core" to a different extent across groups. The $k$ core centrality measure shows "core" areas belong to the maximum core while WA and other fROIs vary across groups. The results may provide a benchmark to preserve equal treatment outcomes for bilingual patients.

q-bio.NC↗

arXiv2019

Core language brain network for fMRI-language task used in clinical applications

Functional magnetic resonance imaging (fMRI) is widely used in clinical applications to highlight brain areas involved in specific cognitive processes. Brain impairments, such as tumors, suppress the fMRI activation of the anatomical areas they invade and, thus, brain-damaged functional networks present missing links/areas of activation. The identification of the missing circuitry components is of crucial importance to estimate the damage extent. The study of functional networks associated to clinical tasks but performed by healthy individuals becomes, therefore, of paramount concern. These `healthy' networks can, indeed, be used as control networks for clinical studies. In this work we investigate the functional architecture of 20 healthy individuals performing a language task designed for clinical purposes. We unveil a common architecture persistent across all subjects under study, which involves Broca's area, Wernicke's area, the Premotor area, and the pre-Supplementary motor area. We study the connectivity weight of this circuitry by using the k-core centrality measure and we find that three of these areas belong to the most robust structure of the functional language network for the specific task under study. Our results provide useful insight for clinical applications on primarily important functional connections which, thus, should be preserved through brain surgery.

q-bio.NC↗

arXiv2019

How the Brain Transitions from Conscious to Subliminal Perception

We study the transition in the functional networks that characterize the human brains' conscious-state to an unconscious subliminal state of perception by using k-core percolation. We find that the most inner core (i.e., the most connected kernel) of the conscious-state functional network corresponds to areas which remain functionally active when the brain transitions from the conscious-state to the subliminal-state. That is, the inner core of the conscious network coincides with the subliminal-state. Mathematical modeling allows to interpret the conscious to subliminal transition as driven by k-core percolation, through which the conscious state is lost by the inactivation of the peripheral k-shells of the conscious functional network. Thus, the inner core and most robust component of the conscious brain corresponds to the unconscious subliminal state. This finding imposes constraints to theoretical models of consciousness, in that the location of the core of the functional brain network is in the unconscious part of the brain rather than in the conscious state as previously thought.

q-bio.NC↗

arXiv2018

The k-core as a predictor of structural collapse in mutualistic ecosystems

Collapses of dynamical systems into irrecoverable states are observed in ecosystems, human societies, financial systems and network infrastructures. Despite their widespread occurrence and impact, these events remain largely unpredictable. In searching for the causes for collapse and instability, theoretical investigations have so far been unable to determine quantitatively the influence of the structural features of the network formed by the interacting species. Here, we derive the condition for the stability of a mutualistic ecosystem as a constraint on the strength of the dynamical interactions between species and a topological invariant of the network: the k-core. Our solution predicts that when species located at the maximum k-core of the network go extinct, as a consequence of sufficiently weak interaction strengths, the system will reach the tipping point of its collapse. As a key variable involved in collapse phenomena, monitoring the k-core of the network may prove a powerful method to anticipate catastrophic events in the vast context that stretches from ecological and biological networks to finance.

nlin.AO↗

arXiv2018

Finding influential nodes for integration in brain networks using optimal percolation theory

Global integration of information in the brain results from complex interactions of segregated brain networks. Identifying the most influential neuronal populations that efficiently bind these networks is a fundamental problem of systems neuroscience. Here we apply optimal percolation theory and pharmacogenetic interventions in-vivo to predict and subsequently target nodes that are essential for global integration of a memory network in rodents. The theory predicts that integration in the memory network is mediated by a set of low-degree nodes located in the nucleus accumbens. This result is confirmed with pharmacogenetic inactivation of the nucleus accumbens, which eliminates the formation of the memory network, while inactivations of other brain areas leave the network intact. Thus, optimal percolation theory predicts essential nodes in brain networks. This could be used to identify targets of interventions to modulate brain function.

q-bio.NC↗

arXiv2016

A simple analytical description of the non-stationary dynamics in Ising spin systems

The analytical description of the dynamics in models with discrete variables (e.g. Ising spins) is a notoriously difficult problem, that can be tackled only under some approximation. Recently a novel variational approach to solve the stationary dynamical regime has been introduced by Pelizzola [Eur. Phys. J. B, 86 (2013) 120], where simple closed equations are derived under mean-field approximations based on the cluster variational method. Here we propose to use the same approximation based on the cluster variational method also for the non-stationary regime, which has not been considered up to now within this framework. We check the validity of this approximation in describing the non-stationary dynamical regime of several Ising models defined on Erdos-Rényi random graphs: we study ferromagnetic models with symmetric and partially asymmetric couplings, models with random fields and also spin glass models. A comparison with the actual Glauber dynamics, solved numerically, shows that one of the two studied approximations (the so-called 'diamond' approximation) provides very accurate results in all the systems studied. Only for the spin glass models we find some small discrepancies in the very low temperature phase, probably due to the existence of a large number of metastable states. Given the simplicity of the equations to be solved, we believe the diamond approximation should be considered as the 'minimal standard' in the description of the non-stationary regime of Ising-like models: any new method pretending to provide a better approximate description to the dynamics of Ising-like models should perform at least as good as the diamond approximation.

cond-mat.dis-nn↗

arXiv2016

On one-step replica symmetry breaking in the Edwards-Anderson spin glass model

We consider a one-step replica symmetry breaking description of the Edwards-Anderson spin glass model in 2D. The ingredients of this description are a Kikuchi approximation to the free energy and a second-level statistical model built on the extremal points of the Kikuchi approximation, which are also fixed points of a Generalized Belief Propagation (GBP) scheme. We show that a generalized free energy can be constructed where these extremal points are exponentially weighted by their Kikuchi free energy and a Parisi parameter $y$, and that the Kikuchi approximation of this generalized free energy leads to second-level, one-step replica symmetry breaking (1RSB), GBP equations. We then proceed analogously to Bethe approximation case for tree-like graphs, where it has been shown that 1RSB Belief Propagation equations admit a Survey Propagation solution. We discuss when and how the one-step-replica symmetry breaking GBP equations that we obtain also allow a simpler class of solutions which can be interpreted as a class of Generalized Survey Propagation equations for the single instance graph case.

cond-mat.dis-nn↗

arXiv2016

A Cavity Master Equation for the continuous time dynamics of discrete spins models

We present a new method to close the Master Equation representing the continuous time dynamics of Ising interacting spins. The method makes use of the the theory of Random Point Processes to derive a master equation for local conditional probabilities. We analytically test our solution studying two known cases, the dynamics of the mean field ferromagnet and the dynamics of the one dimensional Ising system. We then present numerical results comparing our predictions with Monte Carlo simulations in three different models on random graphs with finite connectivity: the Ising ferromagnet, the Random Field Ising model, and the Viana-Bray spin-glass model.

cond-mat.dis-nn↗

arXiv2015

Causal analysis, Correlation-Response and Dynamic cavity

The purpose of this note is to point out analogies between causal analysis in statistics and the correlation-response theory in statistical physics. It is further shown that for some systems the dynamic cavity offers a way to compute the stationary state of a non- equilibrium process effectively, which could then be taken an alternative starting point of causal analysis.

cond-mat.stat-mech↗

arXiv2015

Dynamic message-passing approach for kinetic spin models with reversible dynamics

A method to approximately close the dynamic cavity equations for synchronous reversible dynamics on a locally tree-like topology is presented. The method builds on $(a)$ a graph expansion to eliminate loops from the normalizations of each step in the dynamics, and $(b)$ an assumption that a set of auxilary probability distributions on histories of pairs of spins mainly have dependencies that are local in time. The closure is then effectuated by projecting these probability distributions on $n$-step Markov processes. The method is shown in detail on the level of ordinary Markov processes ($n=1$), and outlined for higher-order approximations ($n>1$). Numerical validations of the technique are provided for the reconstruction of the transient and equilibrium dynamics of the kinetic Ising model on a random graph with arbitrary connectivity symmetry.

cond-mat.dis-nn↗

arXiv2014

Cavity Method: Message Passing from a Physics Perspective

In this three-sections lecture cavity method is introduced as heuristic framework from a Physics perspective to solve probabilistic graphical models and it is presented both at the replica symmetric (RS) and 1-step replica symmetry breaking (1RSB) level. This technique has been applied with success on a wide range of models and problems such as spin glasses, random constrain satisfaction problems (rCSP), error correcting codes etc. Firstly, the RS cavity solution for Sherrington-Kirkpatrick model---a fully connected spin glass model---is derived and its equivalence to the RS solution obtained using replicas is discussed. Then, the general cavity method for diluted graphs is illustrated both at RS and 1RSB level. The latter was a significant breakthrough in the last decade and has direct applications to rCSP. Finally, as example of an actual problem, K-SAT is investigated using belief and survey propagation.

cond-mat.dis-nn↗

arXiv2014

Perturbative large deviation analysis of non-equilibrium dynamics

Macroscopic fluctuation theory has shown that a wide class of non-equilibrium stochastic dynamical systems obey a large deviation principle, but except for a few one-dimensional examples these large deviation principles are in general not known in closed form. We consider the problem of constructing successive approximations to an (unknown) large deviation functional and show that the non-equilibrium probability distribution the takes a Gibbs-Boltzmann form with a set of auxiliary (non-physical) energy functions. The expectation values of these auxiliary energy functions and their conjugate quantities satisfy a closed system of equations which can imply a considerable reduction of dimensionality of the dynamics. We show that the accuracy of the approximations can be tested self-consistently without solving the full non- equilibrium equations. We test the general procedure on the simple model problem of a relaxing 1D Ising chain.

cond-mat.stat-mech↗

arXiv2013

Mean field spin glasses treated with PDE techniques

Following an original idea of F. Guerra, in this notes we analyze the Sherrington-Kirkpatrick model from different perspectives, all sharing the underlying approach which consists in linking the resolution of the statistical mechanics of the model (e.g. solving for the free energy) to well-known partial differential equation (PDE) problems (in suitable spaces). The plan is then to solve the related PDE using techniques involved in their native field and lastly bringing back the solution in the proper statistical mechanics framework. Within this strand, after a streamlined test-case on the Curie-Weiss model to highlight the methods more than the physics behind, we solve the SK both at the replica symmetric and at the 1-RSB level, obtaining the correct expression for the free energy via an analogy to a Fourier equation and for the self-consistencies with an analogy to a Burger equation, whose shock wave develops exactly at critical noise level (triggering the phase transition). Our approach, beyond acting as a new alternative method (with respect to the standard routes) for tackling the complexity of spin glasses, links symmetries in PDE theory with constraints in statistical mechanics and, as a novel result from the theoretical physics perspective, we obtain a new class of polynomial identities (namely of Aizenman-Contucci type but merged within the Guerra's broken replica measures), whose interest lies in understanding, via the recent Panchenko breakthroughs, how to force the overlap organization to the ultrametric tree predicted by Parisi.

cond-mat.dis-nn↗

arXiv2012

Anergy in self-directed B lymphocytes from a statistical mechanics perspective

The ability of the adaptive immune system to discriminate between self and non-self mainly stems from the ontogenic clonal-deletion of lymphocytes expressing strong binding affinity with self-peptides. However, some self-directed lymphocytes may evade selection and still be harmless due to a mechanism called clonal anergy. As for B lymphocytes, two major explanations for anergy developed over three decades: according to "Varela theory", it stems from a proper orchestration of the whole B-repertoire, in such a way that self-reactive clones, due to intensive interactions and feed-back from other clones, display more inertia to mount a response. On the other hand, according to the `two-signal model", which has prevailed nowadays, self-reacting cells are not stimulated by helper lymphocytes and the absence of such signaling yields anergy. The first result we present, achieved through disordered statistical mechanics, shows that helper cells do not prompt the activation and proliferation of a certain sub-group of B cells, which turn out to be just those broadly interacting, hence it merges the two approaches as a whole (in particular, Varela theory is then contained into the two-signal model). As a second result, we outline a minimal topological architecture for the B-world, where highly connected clones are self-directed as a natural consequence of an ontogenetic learning; this provides a mathematical framework to Varela perspective. As a consequence of these two achievements, clonal deletion and clonal anergy can be seen as two inter-playing aspects of the same phenomenon too.

physics.bio-ph↗