arXiv subjects

Giri Gopalan

Publications and source records attributed to Giri Gopalan.

13 recordsLinked to original sources

arXiv2025

A Statistician's Overview of Physics-Informed Neural Networks for Spatio-Temporal Data

The recent success of deep neural network models with physical constraints (so-called, Physics-Informed Neural Networks, PINNs) has led to renewed interest in the incorporation of mechanistic information in predictive models. Statisticians and others have long been interested in this problem, which has led to several practical and innovative solutions dating back decades. In this overview, we focus on the problem of data-driven prediction and inference of dynamic spatio-temporal processes that include mechanistic information, such as would be available from partial differential equations, with a strong focus on the quantification of uncertainty associated with data, process, and parameters. We give a brief review of several paradigms and focus our attention on Bayesian implementations given they naturally accommodate uncertainty quantification. We then show that it is straight-forward to include the Bayesian PINN (B-PINN) within the Bayesian hierarchical model (BHM) framework that has long been considered for modeling dynamic spatio-temporal processes. Such a BHM-PINN is illustrated via a simulation study in which a latent nonlinear Burgers' equation PDE governs the dynamics of Poisson distributed spatio-temporal data.

stat.ME↗

arXiv2025

Length scale estimation of excited quantum oscillators

Massive quantum oscillators are finding increasing applications in proposals for high-precision quantum sensors and interferometric detection of weak forces. Although optimal estimation of certain properties of massive quantum oscillators such as phase shifts and displacements have strict counterparts in the theory of quantum estimation of the electromagnetic field, the phase space anisotropy of the massive oscillator is characterized by a length scale parameter that is an independent target for quantum estimation methods. We show that displaced squeezed states and excited eigenstates of a massive oscillator exhibit Heisenberg scaling of the quantum Fisher information for the length scale with respect to excitation number, and discuss asymptotically unbiased and efficient estimation allowing to achieve the predicted sensitivity. We construct a sequence of entangled states of two massive oscillators that provides a boost in length scale sensitivity equivalent to appending a third massive oscillator to a non-entangled system, and a state of $N$ oscillators exhibiting Heisenberg scaling with respect to the total energy.

quant-ph↗

arXiv2025

Statistical Uncertainty Quantification for Aggregate Performance Metrics in Machine Learning Benchmarks

Modern artificial intelligence is supported by machine learning models (e.g., foundation models) that are pretrained on a massive data corpus and then adapted to solve a variety of downstream tasks. To summarize performance across multiple tasks, evaluation metrics are often aggregated into a summary metric, e.g., average accuracy across 10 question-answering tasks. When aggregating evaluation metrics, it is useful to incorporate uncertainty in the aggregate metric in order to gain a more realistic understanding of model performance. Our objective in this work is to demonstrate how statistical methodology can be used for quantifying uncertainty in metrics that have been aggregated across multiple tasks. The methods we emphasize are bootstrapping, Bayesian hierarchical (i.e., multilevel) modeling, and the visualization of task weightings that consider standard errors. These techniques reveal insights such as the dominance of a specific model for certain types of tasks despite an overall poor performance. We use a popular ML benchmark, the Visual Task Adaptation Benchmark (VTAB), to demonstrate the usefulness of our approaches.

stat.ML↗

arXiv2024

Emulation with uncertainty quantification of regional sea-level change caused by the Antarctic Ice Sheet

Projecting sea-level change in various climate-change scenarios typically involves running forward simulations of the Earth's gravitational, rotational and deformational (GRD) response to ice mass change, which requires high computational cost and time. Here we build neural-network emulators of sea-level change at 27 coastal locations, due to the GRD effects associated with future Antarctic Ice Sheet mass change over the 21st century. The emulators are based on datasets produced using a numerical solver for the static sea-level equation and published ISMIP6-2100 ice-sheet model simulations referenced in the IPCC AR6 report. We show that the neural-network emulators have an accuracy that is competitive with baseline machine learning emulators. In order to quantify uncertainty, we derive well-calibrated prediction intervals for simulated sea-level change via a linear regression postprocessing technique that uses (nonlinear) machine learning model outputs, a technique that has previously been applied to numerical climate models. We also demonstrate substantial gains in computational efficiency: a feedforward neural-network emulator exhibits on the order of 100 times speedup in comparison to the numerical sea-level equation solver that is used for training.

physics.ao-ph↗

arXiv2024

Sequential Monte Carlo for Cut-Bayesian Posterior Computation

We propose a sequential Monte Carlo (SMC) method to efficiently and accurately compute cut-Bayesian posterior quantities of interest, variations of standard Bayesian approaches constructed primarily to account for model misspecification. We prove finite sample concentration bounds for estimators derived from the proposed method and apply these results to a realistic setting where a computer model is misspecified. Two theoretically justified variations are presented for making the sequential Monte Carlo estimator more computationally efficient, based on linear tempering and finding suitable permutations of initial parameter draws. We then illustrate the SMC method for inference in a modular chemical reactor example that includes submodels for reaction kinetics, turbulence, mass transfer, and diffusion. The samples obtained are commensurate with a direct-sampling approach that consists of running multiple Markov chains, with computational efficiency gains using the SMC method. Overall, the SMC method presented yields a novel, rigorous approach to computing with cut-Bayesian posterior distributions.

stat.CO↗

arXiv2021

A Review of Bayesian Modelling in Glaciology

Bayesian methods for modelling and inference are being increasingly used in the cryospheric sciences, and glaciology in particular. Here, we present a review of recent works in glaciology that adopt a Bayesian approach when conducting an analysis. We organise the chapter into three categories: i) Gaussian-Gaussian models, ii) Bayesian hierarchical models, and iii) Bayesian calibration approaches. In addition, we present two detailed case studies that involve the application of Bayesian hierarchical models in glaciology. The first case study is on the spatial prediction of surface mass balance across the Icelandic mountain glacier Langjökull, and the second is on the prediction of sea-level rise contributions from the Antactcic ice sheet. This chapter is presented in such a way that it is accessible to both statisticians as well as earth scientists.

stat.AP↗

arXiv2021

A higher-order singular value decomposition tensor emulator for spatio-temporal simulators

We introduce methodology to construct an emulator for environmental and ecological spatio-temporal processes that uses the higher order singular value decomposition (HOSVD) as an extension of singular value decomposition (SVD) approaches to emulation. Some important advantages of the method are that it allows for the use of a combination of supervised learning methods (e.g., random forests and Gaussian process regression) and also allows for the prediction of process values at spatial locations and time points that were not used in the training sample. The method is demonstrated with two applications: the first is a periodic solution to a shallow ice approximation partial differential equation from glaciology, and second is an agent-based model of collective animal movement. In both cases, we demonstrate the value of combining different machine learning models for accurate emulation. In addition, in the agent-based model case we demonstrate the ability of the tensor emulator to successfully capture individual behavior in space and time. We demonstrate via a real data example the ability to perform Bayesian inference in order to learn parameters governing collective animal behavior.

stat.ME↗

arXiv2019

A Hierarchical Spatio-Temporal Statistical Model Motivated by Glaciology

In this paper, we extend and analyze a Bayesian hierarchical spatio-temporal model for physical systems. A novelty is to model the discrepancy between the output of a computer simulator for a physical process and the actual process values with a multivariate random walk. For computational efficiency, linear algebra for bandwidth limited matrices is utilized, and first-order emulator inference allows for the fast emulation of a numerical partial differential equation (PDE) solver. A test scenario from a physical system motivated by glaciology is used to examine the speed and accuracy of the computational methods used, in addition to the viability of modeling assumptions. We conclude by discussing how the model and associated methodology can be applied in other physical contexts besides glaciology.

stat.ME↗

arXiv2018

Classifying X-ray Binaries: A Probabilistic Approach

In X-ray binary star systems consisting of a compact object that accretes material from an orbiting secondary star, there is no straightforward means to decide if the compact object is a black hole or a neutron star. To assist this classification, we develop a Bayesian statistical model that makes use of the fact that X-ray binary systems appear to cluster based on their compact object type when viewed from a 3-dimensional coordinate system derived from X-ray spectral data. The first coordinate of this data is the ratio of counts in mid to low energy band (color 1), the second coordinate is the ratio of counts in high to low energy band (color 2), and the third coordinate is the sum of counts in all three bands. We use this model to estimate the probabilities that an X-ray binary system contains a black hole, non-pulsing neutron star, or pulsing neutron star. In particular, we utilize a latent variable model in which the latent variables follow a Gaussian process prior distribution, and hence we are able to induce the spatial correlation we believe exists between systems of the same type. The utility of this approach is evidenced by the accurate prediction of system types using Rossi X-ray Timing Explorer All Sky Monitor data, but it is not flawless. In particular, non-pulsing neutron systems containing "bursters" that are close to the boundary demarcating systems containing black holes tend to be classified as black hole systems. As a byproduct of our analyses, we provide the astronomer with public R code that can be used to predict the compact object type of X-ray binaries given training data.

astro-ph.HE↗

arXiv2017

Admissibility of a posterior predictive decision rule

Recent decades have seen an interest in prediction problems for which Bayesian methodology has been used ubiquitously. Sampling from or approximating the posterior predictive distribution in a Bayesian model allows one to make inferential statements about potentially observable random quantities given observed data. The purpose of this note is to use statistical decision theory as a basis to justify the use of a posterior predictive distribution for making a point prediction.

stat.ML↗

arXiv2017

Quantification of observed prior and likelihood information in parametric Bayesian modeling

Two data-dependent information metrics are developed to quantify the information of the prior and likelihood functions within a parametric Bayesian model, one of which is closely related to the reference priors from Berger, Bernardo, and Sun, and information measure introduced by Lindley. A combination of theoretical, empirical, and computational support provides evidence that these information-theoretic metrics may be useful diagnostic tools when performing a Bayesian analysis.

stat.ML↗

arXiv2016

Application of the Trend Filtering Algorithm for Photometric Time Series Data

Detecting transient light curves (e.g., transiting planets) requires high precision data, and thus it is important to effectively filter systematic trends affecting ground based wide field surveys. We apply an implementation of the Trend Filtering Algorithm (TFA) (Kovacs et al. 2005) to the 2MASS calibration catalog and select Palomar Transient Factory (PTF) photometric time series data. TFA is successful at reducing the overall dispersion of light curves, however it may over filter intrinsic variables and increase "instantaneous" dispersion when a template set is not judiciously chosen. In an attempt to rectify these issues we modify the original literature TFA by including measurement uncertainties in its computation, including ancillary data correlated with noise, and algorithmically selecting a template set using clustering algorithms as suggested by various authors. This approach may be particularly useful for appropriately accounting for variable photometric precision surveys and/or combined data-sets. In summary, our contributions are to provide a MATLAB software implementation of TFA and a number of modifications tested on synthetics and real data, summarize the performance of TFA and various modifications on real ground based data sets (2MASS and PTF), and assess the efficacy of TFA and modifications using synthetic light curve tests consisting of transiting and sinusoidal variables. While the transiting variables test indicates that these modifications confer no advantage to transit detection, the sinusoidal variables test indicates potential improvements in detection accuracy.

astro-ph.IM↗

arXiv2015

FastGP: An R Package for Gaussian Processes

Despite their promise and ubiquity, Gaussian processes (GPs) can be difficult to use in practice due to the computational impediments of fitting and sampling from them. Here we discuss a short R package for efficient multivariate normal functions which uses the Rcpp and RcppEigen packages at its core. GPs have properties that allow standard functions to be sped up; as an example we include functionality for Toeplitz matrices whose inverse can be computed in O(n^2) time with methods due to Trench and Durbin (Golub & Van Loan 1996), which is particularly apt when time points (or spatial locations) of a Gaussian process are evenly spaced, since the associated covariance matrix is Toeplitz in this case. Additionally, we include functionality to sample from a latent variable Gaussian process model with elliptical slice sampling (Murray, Adams, & MacKay 2010).

stat.CO↗