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Gniewosz Drwiega

Publications and source records attributed to Gniewosz Drwiega.

2 recordsLinked to original sources

SADL: A Size-Adaptive Decision Layer for Chronic Stroke Lesion Segmentation in ISLES 2026

Chronic ischemic stroke lesions are difficult to segment on T1-weighted MRI. Their appearance overlaps with healthy tissue, and their volumes span four orders of magnitude, so voxel-level and lesion level metrics often disagree. We build an eleven-member nnU-Net ensemble that covers five design axes: a baseline dice + top-K loss, heavy augmentation, per-lesion volume loss re-weighting, stochastic weight averaging, and a sampling-and-architecture block that pairs cohort-balanced sampling with a residual-encoder backbone. Weighted soft-map fusion of the members feeds a tuned decision layer, SADL, that estimates lesion volume, applies an adaptive per-lesion-size threshold, prunes components by voxel count and peak probability, and adds a never-empty rescue. All fusion weights and per-bucket parameters are fitted on out-of-fold (OOF) predictions, so tuning never touches the held-out test set. On a site-disjoint 91-case holdout, SADL reaches Dice 0.7322, lesion-F1 0.7461 and PR-AUC 0.8430 when scored online with the challenge's released evaluation code. A paired non-parametric bootstrap against a reference single ensemble member confirms the lesion-F1 gain at p=0.024, and the gain is largest in the small-lesion regime, where the rescue step recovers cases that a fixed threshold would silently discard.

cs.CV↗

Mind the Gap: Mesh-Guided Repair of Broken Vessels

Vessel segmentation is commonly optimized as voxel-wise classification, but small local errors can strongly disrupt vascular connectivity while having little effect on overlap scores. This is particularly problematic for downstream analyses that rely on centerlines, branches, connected components, or graph structure. We propose a mesh-guided post-processing framework for repairing broken vessel segmentations produced by nnU-Net. For each predicted binary mask, a deformable template mesh is fitted to the mask surface in physical space and used as a case-specific geometric scaffold. The fitted mesh is not voxelized as the final segmentation; instead, it guides conservative reconnection of disconnected components by proposing or validating thin bridge candidates under foreground-growth constraints. We evaluated this approach in three vascular anatomies using AortaSeg24 and SEGA for the aorta, TopCoW for the Circle of Willis, and PARSE for the pulmonary arteries. Performance is measured using Dice, connected-component Dice (ccDice), and the Betti-0 number. Across these datasets, repair substantially improved connectivity while preserving overlap: Dice remained nearly unchanged, whereas ccDice increased from 0.596 to 0.992 for aorta, from 0.722 to 0.835 for TopCoW, and from 0.028 to 0.862 for PARSE. The FOMAML meta-initialization further accelerated the fitting per-case, supporting practical mesh-based repair of the vascular topology. These results suggest that explicit mesh representations can provide a useful geometric prior for correcting topological failures in otherwise accurate voxel segmentations.

cs.CV↗