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Grady B. Wright

Publications and source records attributed to Grady B. Wright.

At least 19 recordsLinked to original sources

A high-order, meshless, Lagrangian--Eulerian RBF-FD method for advection--diffusion--reaction on moving manifolds

We present a high-order radial basis function-generated finite difference (RBF-FD) method for partial differential equations on moving manifolds $\mathcal M(t)\subset\mathbb R^3$ of co-dimension one. Our method builds on the tangent-plane formulation of surface RBF-FD and combines Lagrangian and Eulerian treatments: the manifold and material derivative are evolved in a Lagrangian fashion, while the remaining surface differential operators are reconstructed on the instantaneous point cloud and stabilized, when necessary, by a quasi-analytical hyperviscosity formulation. Lagrangian marker drift is handled by adaptive rearrangement using a compact global parametric model of the moving surface, which also supplies accurate normals and geometry-based quadrature. After rearrangement, we reconstruct the multistep history by backward semi-Lagrangian tracing and interpolation before resuming the Lagrangian time discretization. We exploit temporal coherence through three update strategies: defect correction for the local RBF-FD weights, a curvature-based update of the hyperviscosity coefficients between spectral recomputations, and a global defect-correction iteration that reuses an incomplete LU (ILU) factorization before preconditioned generalized minimal residual (GMRES) iterations. Finally, we enforce the prescribed global mass balance through a scalar projection based on the evolving surface quadrature. Numerical experiments demonstrate high-order convergence, conservation to roundoff in source-free problems, stable long-time integration, and substantial savings from the proposed update strategies.

math.NA

Kernel approximation beyond the native space -- with applications to approximation on manifolds

This article treats kernel approximation and interpolation on embedded manifolds of $\mathbb{R}^N$using restrictions of positive and conditionally positive definite kernels. The main challenge is to develop an approximation theory that treats error measured in highly regular smoothness spaces relative to the kernel. This means that the order of smoothness is higher than that of the kernel's associated native space (in the positive definite case, the reproducing kernel Hilbert space generated by the kernel). This prevents the use of standard techniques for controlling error in this setting, especially RKHS space arguments like orthogonality of the interpolation projector, or bounds using the {\em power function}. To address this challenge, we extend methods for treating target functions given as potentials introduced by DeVore and Ron, and give conditions guaranteeing that restrictions of such functions span Sobolev smoothness spaces on the manifolds. Together with kernel-based Bernstein inequalities for embedded manifolds, these results give a comprehensive theory for interpolation error. As an application of the theory, we derive new error estimates for approximating the eigenspace of certain differential operators arising from kernel-based methods for partial differential equations on manifolds.

math.CA

Spectral interpolation in semi-implicit semi-Lagrangian methods for shallow water equations on the sphere

Semi-implicit semi-Lagrangian (SISL) methods are commonly used for the shallow water equations (SWE) because they allow for larger time steps than those permitted by the Courant-Friedrichs-Lewy (CFL) stability condition in Eulerian schemes. In these methods, the semi-Lagrangian treatment of advection is typically performed using lower-order interpolation, such as tensor-product Lagrange interpolation with cubic or quintic polynomials. However, operational SISL schemes routinely employ spectrally accurate spatial discretizations, such as spherical harmonics or the double Fourier sphere (DFS) method, for computing horizontal derivatives of the prognostic variables. This creates a mismatch in numerical accuracy, making the use of low-order interpolation less clearly justified. In this work, we present the first numerical investigation of spectrally accurate interpolation in SISL schemes for the SWE. Our approach builds upon the recently developed DFS-based SWE model, incorporating a spectral interpolation scheme that is accelerated using the nonuniform fast Fourier transform (NUFFT) to maintain the same overall computational complexity as the original model. Using several standard SWE test cases, we evaluate the accuracy, conservation, and numerical diffusion of the new model, particularly over long integration times. Compared to an equivalent SISL model with low-order interpolation, the new model achieves higher accuracy, improved mass and energy conservation, and reduced numerical diffusion, demonstrating the potential benefits of incorporating spectrally accurate interpolation into SISL schemes.

math.NA

Generalized local polynomial reproductions

We present a general framework, treating Lipschitz domains in Riemannian manifolds, that provides conditions guaranteeing the existence of norming sets and generalized local polynomial reproduction - a powerful tool used in the analysis of various mesh-free methods and a mesh-free method in its own right. As a key application, we prove the existence of smooth local polynomial reproductions on compact subsets of algebraic manifolds in $\mathbb{R}^n$ with Lipschitz boundary. These results are then applied to derive new findings on the existence, stability, regularity, locality, and approximation properties of shape functions for a coordinate-free moving least squares approximation method on algebraic manifolds, which operates directly on point clouds without requiring tangent plane approximations. There are two appendices: the first derives high order Markov inequalities for polynomials on algebraic manifolds and the second gives instructions for calculating the dimension of the space of degree $m$ polynomials restricted to a real algebraic variety.

math.CA

A Semi-Lagrangian scheme on embedded manifolds using generalized local polynomial reproductions

We analyze rates of uniform convergence for a class of high-order semi-Lagrangian schemes for first-order, time-dependent partial differential equations on embedded submanifolds of $\mathbb{R}^d$ (including advection equations on surfaces) by extending the error analysis of Falcone and Ferretti. A central requirement in our analysis is a remapping operator that achieves both high approximation orders and strong stability, a combination that is challenging to obtain and of independent interest. For this task, we propose a novel mesh-free remapping operator based on $\ell_1$ minimizing generalized polynomial reproduction, which uses only point values and requires no additional geometric information from the manifold (such as access to tangent spaces or curvature). Our framework also rigorously addresses the numerical solution of ordinary differential equations on manifolds via projection methods. We include numerical experiments that support the theoretical results and also suggest some new directions for future research.

math.NA

Error propagation of direct pressure gradient integration and a Helmholtz-Hodge decomposition based pressure field reconstruction method for image velocimetry

Recovering pressure fields from image velocimetry measurements has two general strategies: i) directly integrating the pressure gradients from the momentum equation and ii) solving or enforcing the pressure Poisson equation (divergence of the pressure gradients). In this work, we analyze the error propagation of the former strategy and provide some practical insights. For example, we establish the error scaling laws for the Pressure Gradient Integration (PGI) and the Pressure Poisson Equation (PPE). We explain why applying the Helmholtz-Hodge Decomposition (HHD) could significantly reduce the error propagation for the PGI. We also propose to use a novel HHD-based pressure field reconstruction strategy that offers the following advantages or features: i) effective processing of noisy scattered or structured image velocimetry data on a complex domain; ii) using Radial Basis Functions (RBFs) with divergence/curl-free kernels to provide divergence-free correction to the velocity fields for incompressible flows and curl-free correction for pressure gradients; and iii) enforcing divergence/curl-free constraints without using Lagrangian multipliers. Complete elimination of divergence-free bias in measured pressure gradient and curl-free bias in the measured velocity field results in superior accuracy. Synthetic velocimetry data based on exact solutions and high-fidelity simulations are used to validate the analysis as well as demonstrate the flexibility and effectiveness of the RBF-HHD solver.

physics.flu-dyn

Barycentric interpolation formulas for the sphere and the disk

Spherical and polar geometries arise in many important areas of computational science, including weather and climate forecasting, optics, and astrophysics. In these applications, tensor-product grids are often used to represent unknowns. However, interpolation schemes that exploit the tensor-product structure can introduce artificial boundaries at the poles in spherical coordinates and at the origin in polar coordinates, leading to numerical challenges, especially for high-order methods. In this paper, we present new bivariate trigonometric barycentric interpolation formulas for spheres and bivariate trigonometric/polynomial barycentric formulas for disks, designed to overcome these issues. These formulas are also efficient, as they only rely on a set of (precomputed) weights that depend on the grid structure and not the data itself. The formulas are based on the Double Fourier Sphere (DFS) method, which transforms the sphere into a doubly periodic domain and the disk into a domain without an artificial boundary at the origin. For standard tensor-product grids, the proposed formulas exhibit exponential convergence when approximating smooth functions. We provide numerical results to demonstrate these convergence rates and showcase an application of the spherical barycentric formulas in a semi-Lagrangian advection scheme for solving the tracer transport equation on the sphere.

math.NA

Implicit Surface Reconstruction with a Curl-free Radial Basis Function Partition of Unity Method

Surface reconstruction from a set of scattered points, or a point cloud, has many applications ranging from computer graphics to remote sensing. We present a new method for this task that produces an implicit surface (zero-level set) approximation for an oriented point cloud using only information about (approximate) normals to the surface. The technique exploits the fundamental result from vector calculus that the normals to an implicit surface are curl-free. By using a curl-free radial basis function (RBF) interpolation of the normals, we can extract a potential for the vector field whose zero-level surface approximates the point cloud. We use curl-free RBFs based on polyharmonic splines for this task, since they are free of any shape or support parameters. Furthermore, to make this technique efficient and able to better represent local sharp features, we combine it with a partition of unity (PU) method. The result is the curl-free partition of unity (CFPU) method. We show how CFPU can be adapted to enforce exact interpolation of a point cloud and can be regularized to handle noise in both the normal vectors and the point positions. Numerical results are presented that demonstrate how the method converges for a known surface as the sampling density increases, how regularization handles noisy data, and how the method performs on various problems found in the literature.

math.NA

MGM: A meshfree geometric multilevel method for systems arising from elliptic equations on point cloud surfaces

We develop a new meshfree geometric multilevel (MGM) method for solving linear systems that arise from discretizing elliptic PDEs on surfaces represented by point clouds. The method uses a Poisson disk sampling-type technique for coarsening the point clouds and new meshfree restriction/interpolation operators based on polyharmonic splines for transferring information between the coarsened point clouds. These are then combined with standard smoothing and operator coarsening methods in a V-cycle iteration. MGM is applicable to discretizations of elliptic PDEs based on various localized meshfree methods, including RBF finite differences (RBF-FD) and generalized finite differences (GFD). We test MGM both as a standalone solver and preconditioner for Krylov subspace methods on several test problems using RBF-FD and GFD, and numerically analyze convergence rates, efficiency, and scaling with increasing point cloud sizes. We also perform a side-by-side comparison to algebraic multigrid (AMG) methods for solving the same systems. Finally, we further demonstrate the effectiveness of MGM by applying it to three challenging applications on complicated surfaces: pattern formation, surface harmonics, and geodesic distance.

math.NA

An Efficient High-Order Meshless Method for Advection-Diffusion Equations on Time-Varying Irregular Domains

We present a high-order radial basis function finite difference (RBF-FD) framework for the solution of advection-diffusion equations on time-varying domains. Our framework is based on a generalization of the recently developed Overlapped RBF-FD method that utilizes a novel automatic procedure for computing RBF-FD weights on stencils in variable-sized regions around stencil centers. This procedure eliminates the overlap parameter $δ$, thereby enabling tuning-free assembly of RBF-FD differentiation matrices on moving domains. In addition, our framework utilizes a simple and efficient procedure for updating differentiation matrices on moving domains tiled by node sets of time-varying cardinality. Finally, advection-diffusion in time-varying domains is handled through a combination of rapid node set modification, a new high-order semi-Lagrangian method that utilizes the new tuning-free overlapped RBF-FD method, and a high-order time-integration method. The resulting framework has no tuning parameters and has $O(N \log N)$ time complexity. We demonstrate high-orders of convergence for advection-diffusion equations on time-varying 2D and 3D domains for both small and large Peclet numbers. We also present timings that verify our complexity estimates. Finally, we utilize our method to solve a coupled 3D problem motivated by models of platelet aggregation and coagulation, once again demonstrating high-order convergence rates on a moving domain.

math.NA

A Partition of Unity Method for Divergence-free or Curl-free Radial Basis Function Approximation

Divergence-free (div-free) and curl-free vector fields are pervasive in many areas of science and engineering, from fluid dynamics to electromagnetism. A common problem that arises in applications is that of constructing smooth approximants to these vector fields and/or their potentials based only on discrete samples. Additionally, it is often necessary that the vector approximants preserve the div-free or curl-free properties of the field to maintain certain physical constraints. Div/curl-free radial basis functions (RBFs) are a particularly good choice for this application as they are meshfree and analytically satisfy the div-free or curl-free property. However, this method can be computationally expensive due to its global nature. In this paper, we develop a technique for bypassing this issue that combines div/curl-free RBFs in a partition of unity framework, where one solves for local approximants over subsets of the global samples and then blends them together to form a div-free or curl-free global approximant. The method is applicable to div/curl-free vector fields in $\R^2$ and tangential fields on two-dimensional surfaces, such as the sphere, and the curl-free method can be generalized to vector fields in $\R^d$. The method also produces an approximant for the scalar potential of the underlying sampled field. We present error estimates and demonstrate the effectiveness of the method on several test problems.

math.NA

A stable algorithm for divergence-free radial basis functions in the flat limit

The direct method used for calculating smooth radial basis function (RBF) interpolants in the flat limit becomes numerically unstable. The RBF-QR algorithm bypasses this ill-conditioning using a clever change of basis technique. We extend this method for computing interpolants involving matrix-valued kernels, specifically surface divergence-free RBFs on the sphere, in the flat limit. Results illustrating the effectiveness of this algorithm are presented for a divergence-free vector field on the sphere from samples at scattered points.

math.NA

A Fast and Accurate Algorithm for Spherical Harmonic Analysis on HEALPix Grids with Applications to the Cosmic Microwave Background Radiation

The Hierarchical Equal Area isoLatitude Pixelation (HEALPix) scheme is used extensively in astrophysics for data collection and analysis on the sphere. The scheme was originally designed for studying the Cosmic Microwave Background (CMB) radiation, which represents the first light to travel during the early stages of the universe's development and gives the strongest evidence for the Big Bang theory to date. Refined analysis of the CMB angular power spectrum can lead to revolutionary developments in understanding the nature of dark matter and dark energy. In this paper, we present a new method for performing spherical harmonic analysis for HEALPix data, which is a central component to computing and analyzing the angular power spectrum of the massive CMB data sets. The method uses a novel combination of a non-uniform fast Fourier transform, the double Fourier sphere method, and Slevinsky's fast spherical harmonic transform (Slevinsky, 2019). For a HEALPix grid with $N$ pixels (points), the computational complexity of the method is $\mathcal{O}(N\log^2 N)$, with an initial set-up cost of $\mathcal{O}(N^{3/2}\log N)$. This compares favorably with $\mathcal{O}(N^{3/2})$ runtime complexity of the current methods available in the HEALPix software when multiple maps need to be analyzed at the same time. Using numerical experiments, we demonstrate that the new method also appears to provide better accuracy over the entire angular power spectrum of synthetic data when compared to the current methods, with a convergence rate at least two times higher.

math.NA

A Robust Hyperviscosity Formulation for Stable RBF-FD Discretizations of Advection-Diffusion-Reaction Equations on Manifolds

We present a new hyperviscosity formulation for stabilizing radial basis function-finite difference (RBF-FD) discretizations of advection-diffusion-reaction equations on manifolds $\mathbb{M} \subset \mathbb{R}^3$ of co-dimension one. Our technique involves automatic addition of artificial hyperviscosity to damp out spurious modes in the differentiation matrices corresponding to surface gradients, in the process overcoming a technical limitation of a recently-developed Euclidean formulation. Like the Euclidean formulation, the manifold formulation relies on von Neumann stability analysis performed on auxiliary differential operators that mimic the spurious solution growth induced by RBF-FD differentiation matrices. We demonstrate high-order convergence rates on problems involving surface advection and surface advection-diffusion. Finally, we demonstrate the applicability of our formulation to advection-diffusion-reaction equations on manifolds described purely as point clouds. Our surface discretizations use the recently-developed RBF-LOI method, and with the addition of hyperviscosity, are now empirically high-order accurate, stable, and free of stagnation errors.

math.NA

Stable computations with flat radial basis functions using vector-valued rational approximations

One commonly finds in applications of smooth radial basis functions (RBFs) that scaling the kernels so they are `flat' leads to smaller discretization errors. However, the direct numerical approach for computing with flat RBFs (RBF-Direct) is severely ill-conditioned. We present an algorithm for bypassing this ill-conditioning that is based on a new method for rational approximation (RA) of vector-valued analytic functions with the property that all components of the vector share the same singularities. This new algorithm (RBF-RA) is more accurate, robust, and easier to implement than the Contour-Padé method, which is similarly based on vector-valued rational approximation. In contrast to the stable RBF-QR and RBF-GA algorithms, which are based on finding a better conditioned base in the same RBF-space, the new algorithm can be used with any type of smooth radial kernel, and it is also applicable to a wider range of tasks (including calculating Hermite type implicit RBF-FD stencils). We present a series of numerical experiments demonstrating the effectiveness of this new method for computing RBF interpolants in the flat regime. We also demonstrate the flexibility of the method by using it to compute implicit RBF-FD formulas in the flat regime and then using these for solving Poisson's equation in a 3D spherical shell.

math.NA

Computing with functions in spherical and polar geometries I. The sphere

A collection of algorithms is described for numerically computing with smooth functions defined on the unit sphere. Functions are approximated to essentially machine precision by using a structure-preserving iterative variant of Gaussian elimination together with the double Fourier sphere method. We show that this procedure allows for stable differentiation, reduces the oversampling of functions near the poles, and converges for certain analytic functions. Operations such as function evaluation, differentiation, and integration are particularly efficient and can be computed by essentially one-dimensional algorithms. A highlight is an optimal complexity direct solver for Poisson's equation on the sphere using a spectral method. Without parallelization, we solve Poisson's equation with $100$ million degrees of freedom in one minute on a standard laptop. Numerical results are presented throughout. In a companion paper (part II) we extend the ideas presented here to computing with functions on the disk.

math.NA

Extension of Chebfun to periodic functions

Algorithms and underlying mathematics are presented for numerical computation with periodic functions via approximations to machine precision by trigonometric polynomials, including the solution of linear and nonlinear periodic ordinary differential equations. Differences from the nonperiodic Chebyshev case are highlighted.

math.NA

A Radial Basis Function (RBF)-Finite Difference Method for the Simulation of Reaction-Diffusion Equations on Stationary Platelets within the Augmented Forcing Method

We present a computational method for solving the coupled problem of chemical transport in a fluid (blood) with binding/unbinding of the chemical to/from cellular (platelet) surfaces in contact with the fluid, and with transport of the chemical on the cellular surfaces. The overall framework is the Augmented Forcing Point Method (AFM) (\emph{L. Yao and A.L. Fogelson, Simulations of chemical transport and reaction in a suspension of cells I: An augmented forcing point method for the stationary case, IJNMF (2012) 69, 1736-52.}) for solving fluid-phase transport in a region outside of a collection of cells suspended in the fluid. We introduce a novel Radial Basis Function-Finite Difference (RBF-FD) method to solve reaction-diffusion equations on the surface of each of a collection of 2D stationary platelets suspended in blood. Parametric RBFs are used to represent the geometry of the platelets and give accurate geometric information needed for the RBF-FD method. Symmetric Hermite-RBF interpolants are used for enforcing the boundary conditions on the fluid-phase chemical concentration, and their use removes a significant limitation of the original AFM. The efficacy of the new methods are shown through a series of numerical experiments; in particular, second order convergence for the coupled problem is demonstrated.

math.NA