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Grit Hein

Publications and source records attributed to Grit Hein.

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Controlling spatial correlation in k-space interpolation networks for MRI reconstruction: denoising versus apparent blurring

Purpose: Interpretability is essential for the clinical adoption of state-of-the-art machine learning (ML) methods in magnetic resonance imaging (MRI). Conventional evaluation of ML reconstructions relies heavily on aggregate image metrics that require fully sampled references. These metrics, inherited from classical image processing and natural image ML, often overlook the critical challenge of noise amplification specific to medical image reconstruction. This study aims to analyze the influence of nonlinear activations on spatial noise variance distribution of k-space interpolation networks (RAKI) and to provide a framework for incorporating variance maps during network training. Methods: We present an analytical framework that decomposes pixel-level noise variance into components reflecting linear and nonlinear characteristics of RAKI. By applying automatic differentiation on the image-space equivalent of the network, variance maps are computed during each training iteration, enabling runtime quality assessment beyond data consistency. We introduce apparent blurring, quantifying nonlinear signal mixing without dependence on reference images. By incorporating variance maps into the traning loss as regularizers, our self-informed RAKI architecture (G-factor-informed RAKI, GIF-RAKI) can directly integrate updated noise characteristics during runtime. Results: Experimental results demonstrate that variance components quantitatively explain network behavior. GIF-RAKI outperforms conventional RAKI variants in image fidelity and noise suppression. Conclusion: Our methodology advances practical and theoretical aspects of ML-based MRI reconstruction by reinstating reconstruction noise characterization as a cornerstone for performance evaluation, eliminating the need for fully sampled references. GIF-RAKI also enables optimization of the trade-off between denoising and apparent blurring.

physics.med-ph

Corona Health -- A Study- and Sensor-based Mobile App Platform Exploring Aspects of the COVID-19 Pandemic

Physical and mental well-being during the COVID-19 pandemic is typically assessed via surveys, which might make it difficult to conduct longitudinal studies and might lead to data suffering from recall bias. Ecological momentary assessment (EMA) driven smartphone apps can help alleviate such issues, allowing for in situ recordings. Implementing such an app is not trivial, necessitates strict regulatory and legal requirements, and requires short development cycles to appropriately react to abrupt changes in the pandemic. Based on an existing app framework, we developed Corona Health, an app that serves as a platform for deploying questionnaire-based studies in combination with recordings of mobile sensors. In this paper, we present the technical details of Corona Health and provide first insights into the collected data. Through collaborative efforts from experts from public health, medicine, psychology, and computer science, we released Corona Health publicly on Google Play and the Apple App Store (in July, 2020) in 8 languages and attracted 7,290 installations so far. Currently, five studies related to physical and mental well-being are deployed and 17,241 questionnaires have been filled out. Corona Health proves to be a viable tool for conducting research related to the COVID-19 pandemic and can serve as a blueprint for future EMA-based studies. The data we collected will substantially improve our knowledge on mental and physical health states, traits and trajectories as well as its risk and protective factors over the course of the COVID-19 pandemic and its diverse prevention measures.

cs.CY