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Guang Yang

Publications and source records attributed to Guang Yang.

At least 451 records · Page 25Linked to original sources

Transfer Learning Enhanced Generative Adversarial Networks for Multi-Channel MRI Reconstruction

Deep learning based generative adversarial networks (GAN) can effectively perform image reconstruction with under-sampled MR data. In general, a large number of training samples are required to improve the reconstruction performance of a certain model. However, in real clinical applications, it is difficult to obtain tens of thousands of raw patient data to train the model since saving k-space data is not in the routine clinical flow. Therefore, enhancing the generalizability of a network based on small samples is urgently needed. In this study, three novel applications were explored based on parallel imaging combined with the GAN model (PI-GAN) and transfer learning. The model was pre-trained with public Calgary brain images and then fine-tuned for use in (1) patients with tumors in our center; (2) different anatomies, including knee and liver; (3) different k-space sampling masks with acceleration factors (AFs) of 2 and 6. As for the brain tumor dataset, the transfer learning results could remove the artifacts found in PI-GAN and yield smoother brain edges. The transfer learning results for the knee and liver were superior to those of the PI-GAN model trained with its own dataset using a smaller number of training cases. However, the learning procedure converged more slowly in the knee datasets compared to the learning in the brain tumor datasets. The reconstruction performance was improved by transfer learning both in the models with AFs of 2 and 6. Of these two models, the one with AF=2 showed better results. The results also showed that transfer learning with the pre-trained model could solve the problem of inconsistency between the training and test datasets and facilitate generalization to unseen data.

eess.IV↗

Boosting spintronics with superconductivity

Spintronics aims to utilize the spin degree of freedom for energy-efficient, non-volatile memory and logic devices. In this research update, we review state-of-the-art developments and new directions in charge- and spin-based memory/logic with a focus on spintronics and the fascinating potential for superconductivity to boost spin transmission via spin-polarized quasiparticles or triplet Cooper pairs.

cond-mat.supr-con↗

Generative Adversarial Networks (GAN) Powered Fast Magnetic Resonance Imaging -- Mini Review, Comparison and Perspectives

Magnetic Resonance Imaging (MRI) is a vital component of medical imaging. When compared to other image modalities, it has advantages such as the absence of radiation, superior soft tissue contrast, and complementary multiple sequence information. However, one drawback of MRI is its comparatively slow scanning and reconstruction compared to other image modalities, limiting its usage in some clinical applications when imaging time is critical. Traditional compressive sensing based MRI (CS-MRI) reconstruction can speed up MRI acquisition, but suffers from a long iterative process and noise-induced artefacts. Recently, Deep Neural Networks (DNNs) have been used in sparse MRI reconstruction models to recreate relatively high-quality images from heavily undersampled k-space data, allowing for much faster MRI scanning. However, there are still some hurdles to tackle. For example, directly training DNNs based on L1/L2 distance to the target fully sampled images could result in blurry reconstruction because L1/L2 loss can only enforce overall image or patch similarity and does not take into account local information such as anatomical sharpness. It is also hard to preserve fine image details while maintaining a natural appearance. More recently, Generative Adversarial Networks (GAN) based methods are proposed to solve fast MRI with enhanced image perceptual quality. The encoder obtains a latent space for the undersampling image, and the image is reconstructed by the decoder using the GAN loss. In this chapter, we review the GAN powered fast MRI methods with a comparative study on various anatomical datasets to demonstrate the generalisability and robustness of this kind of fast MRI while providing future perspectives.

eess.IV↗

JAS-GAN: Generative Adversarial Network Based Joint Atrium and Scar Segmentations on Unbalanced Atrial Targets

Automated and accurate segmentations of left atrium (LA) and atrial scars from late gadolinium-enhanced cardiac magnetic resonance (LGE CMR) images are in high demand for quantifying atrial scars. The previous quantification of atrial scars relies on a two-phase segmentation for LA and atrial scars due to their large volume difference (unbalanced atrial targets). In this paper, we propose an inter-cascade generative adversarial network, namely JAS-GAN, to segment the unbalanced atrial targets from LGE CMR images automatically and accurately in an end-to-end way. Firstly, JAS-GAN investigates an adaptive attention cascade to automatically correlate the segmentation tasks of the unbalanced atrial targets. The adaptive attention cascade mainly models the inclusion relationship of the two unbalanced atrial targets, where the estimated LA acts as the attention map to adaptively focus on the small atrial scars roughly. Then, an adversarial regularization is applied to the segmentation tasks of the unbalanced atrial targets for making a consistent optimization. It mainly forces the estimated joint distribution of LA and atrial scars to match the real ones. We evaluated the performance of our JAS-GAN on a 3D LGE CMR dataset with 192 scans. Compared with the state-of-the-art methods, our proposed approach yielded better segmentation performance (Average Dice Similarity Coefficient (DSC) values of 0.946 and 0.821 for LA and atrial scars, respectively), which indicated the effectiveness of our proposed approach for segmenting unbalanced atrial targets.

eess.IV↗

Three-Dimensional Embedded Attentive RNN (3D-EAR) Segmentor for Left Ventricle Delineation from Myocardial Velocity Mapping

Myocardial Velocity Mapping Cardiac MR (MVM-CMR) can be used to measure global and regional myocardial velocities with proved reproducibility. Accurate left ventricle delineation is a prerequisite for robust and reproducible myocardial velocity estimation. Conventional manual segmentation on this dataset can be time-consuming and subjective, and an effective fully automated delineation method is highly in demand. By leveraging recently proposed deep learning-based semantic segmentation approaches, in this study, we propose a novel fully automated framework incorporating a 3D-UNet backbone architecture with Embedded multichannel Attention mechanism and LSTM based Recurrent neural networks (RNN) for the MVM-CMR datasets (dubbed 3D-EAR segmentor). The proposed method also utilises the amalgamation of magnitude and phase images as input to realise an information fusion of this multichannel dataset and exploring the correlations of temporal frames via the embedded RNN. By comparing the baseline model of 3D-UNet and ablation studies with and without embedded attentive LSTM modules and various loss functions, we can demonstrate that the proposed model has outperformed the state-of-the-art baseline models with significant improvement.

eess.IV↗

Explainable AI For COVID-19 CT Classifiers: An Initial Comparison Study

Artificial Intelligence (AI) has made leapfrogs in development across all the industrial sectors especially when deep learning has been introduced. Deep learning helps to learn the behaviour of an entity through methods of recognising and interpreting patterns. Despite its limitless potential, the mystery is how deep learning algorithms make a decision in the first place. Explainable AI (XAI) is the key to unlocking AI and the black-box for deep learning. XAI is an AI model that is programmed to explain its goals, logic, and decision making so that the end users can understand. The end users can be domain experts, regulatory agencies, managers and executive board members, data scientists, users that use AI, with or without awareness, or someone who is affected by the decisions of an AI model. Chest CT has emerged as a valuable tool for the clinical diagnostic and treatment management of the lung diseases associated with COVID-19. AI can support rapid evaluation of CT scans to differentiate COVID-19 findings from other lung diseases. However, how these AI tools or deep learning algorithms reach such a decision and which are the most influential features derived from these neural networks with typically deep layers are not clear. The aim of this study is to propose and develop XAI strategies for COVID-19 classification models with an investigation of comparison. The results demonstrate promising quantification and qualitative visualisations that can further enhance the clinician's understanding and decision making with more granular information from the results given by the learned XAI models.

cs.LG↗

Thermal annealing enhancement of Josephson critical currents in ferromagnetic CoFeB

The electrical and structural properties of Co40Fe40B20 (CoFeB) alloy are tunable with thermal annealing. This is key in the optimization of CoFeB-based spintronic devices, where the advantageously low magnetic coercivity, high spin polarization, and controllable magnetocrystalline anisotropy are utilised. So far, there has been no report on superconducting devices based on CoFeB. Here, we report Nb/CoFeB/Nb Josephson devices and demonstrate an enhancement of the critical current by up to 700% following thermal annealing due to increased structural ordering of the CoFeB. The results demonstrate that CoFeB is a promising material for the development of superconducting spintronic devices.

cond-mat.supr-con↗

Marangoni Convection-Driven Laser Fountains and Waves on Free Surfaces of Liquids

It is well accepted that an outward Marangoni convection from a low surface tension region will make the surface depressed. Here, we report that this established perception is only valid for thin liquid films. Using surface laser heating, we show that in deep liquids a laser beam actually pulls up the fluid above the free surface generating fountains with different shapes. Whereas with decreasing liquid depth a transition from fountain to indentation with fountain in-indentation is observed. Further, high-speed imaging reveals a transient surface process before steady elevation is formed, and this dynamic deformation is subsequently utilized to resonantly excite giant surface waves by a modulated laser beam. Computational fluid dynamics models reveal the underlying flow patterns and quantify the depth-dependent and time-resolved surface deformations. Our discoveries and techniques have upended the century-old perception and opened up a new regime of interdisciplinary research and applications of Marangoni-induced interface phenomena and optocapillary fluidic surfaces-the control of fluids with light.

physics.flu-dyn↗

Photometric Redshifts in the W-CDF-S and ELAIS-S1 Fields Based on Forced Photometry from 0.36 -- 4.5 Microns

The W-CDF-S and ELAIS-S1 fields will be two of the LSST Deep Drilling fields, but the availability of spectroscopic redshifts within these two fields is still limited on deg^2 scales. To prepare for future science, we use EAZY to estimate photometric redshifts (photo-zs) in these two fields based on forced-photometry catalogs. Our photo-z catalog consists of ~0.8 million sources covering 4.9 deg^2 in W-CDF-S and ~0.8 million sources covering 3.4 deg^2 in ELAIS-S1, among which there are ~0.6 (W-CDF-S) and ~0.4 (ELAIS-S1) million sources having signal-to-noise-ratio (SNR) > 5 detections in more than 5 bands. By comparing photo-zs and available spectroscopic redshifts, we demonstrate the general reliability of our photo-z measurements. Our photo-z catalog is publicly available at \doi{10.5281/zenodo.4603178}.

astro-ph.GA↗

Measuring Stellar Masses of Emission Line Galaxies at 1.2<z<1.9

The accurate measurement of stellar masses over a wide range of galaxy properties is essential for better constraining models of galaxy evolution. Emission line galaxies (ELGs) tend to have better redshift estimates than continuum-selected objects and have been shown to span a large range of physical properties, including stellar mass. Using data from the 3D-HST Treasury program, we construct a carefully vetted sample of 4350 ELGs at redshifts 1.16<z<1.90. We combine the 3D-HST emission line fluxes with far-UV through near-IR photometry and use the MCSED spectral energy distribution fitting code to constrain the galaxies' physical parameters, such as their star formation rate (SFRs) and stellar masses. Our sample is consistent with the z~2 mass-metallicity relation. More importantly, we show there is a simple but tight correlation between stellar mass and absolute magnitude in a near-IR filter that will be particularly useful in quickly calculating accurate stellar masses for millions of galaxies in upcoming missions such as Euclid and the Nancy Grace Roman Space Telescope.

astro-ph.GA↗

Electro-optically modulated polarization mode conversion in lithium niobate ridge waveguides

Lithium niobate on insulator (LNOI) waveguides, as an emerging technology, have proven to offer a promising platform for integrated optics, due to their strong optical confinement comparable to silicon on insulator (SOI) waveguides, while possessing the versatile properties of lithium niobate, such as high electro-optic coefficients. In this paper, we show that mode hybridization, a phenomenon widely found in vertically asymmetric waveguides, can be efficiently modulated in an LNOI ridge waveguide by electro-optic effect, leading to a polarization mode converter with 97% efficiency. Moreover, the proposed device does not require tapering or periodic poling, thereby greatly simplifying the fabrication process. It can also be actively switched by external fields. Such a platform facilitates technological progress of photonic circuits and sensors.

physics.optics↗

A Multi-Band Forced-Photometry Catalog in the ELAIS-S1 Field

The ELAIS-S1 field will be an LSST Deep Drilling field, and it also has extensive multiwavelength coverage. To improve the utility of the existing data, we use The Tractor to perform forced-photometry measurements in this field. We compile data in 16 bands from the DeepDrill, VIDEO, DES, ESIS, and VOICE surveys. Using a priori information from the high-resolution fiducial images in VIDEO, we model the images in other bands and generate a forced-photometry catalog. This technique enables consistency throughout different surveys, deblends sources from low-resolution images, extends photometric measurements to a fainter magnitude regime, and improves photometric-redshift estimates. Our catalog contains over 0.8 million sources covering a 3.4 deg2 area in the VIDEO footprint and is available at 10.5281/zenodo.4540178.

astro-ph.GA↗

Unbox the Black-box for the Medical Explainable AI via Multi-modal and Multi-centre Data Fusion: A Mini-Review, Two Showcases and Beyond

Explainable Artificial Intelligence (XAI) is an emerging research topic of machine learning aimed at unboxing how AI systems' black-box choices are made. This research field inspects the measures and models involved in decision-making and seeks solutions to explain them explicitly. Many of the machine learning algorithms can not manifest how and why a decision has been cast. This is particularly true of the most popular deep neural network approaches currently in use. Consequently, our confidence in AI systems can be hindered by the lack of explainability in these black-box models. The XAI becomes more and more crucial for deep learning powered applications, especially for medical and healthcare studies, although in general these deep neural networks can return an arresting dividend in performance. The insufficient explainability and transparency in most existing AI systems can be one of the major reasons that successful implementation and integration of AI tools into routine clinical practice are uncommon. In this study, we first surveyed the current progress of XAI and in particular its advances in healthcare applications. We then introduced our solutions for XAI leveraging multi-modal and multi-centre data fusion, and subsequently validated in two showcases following real clinical scenarios. Comprehensive quantitative and qualitative analyses can prove the efficacy of our proposed XAI solutions, from which we can envisage successful applications in a broader range of clinical questions.

cs.AI↗

Spin-orbit coupling suppression and singlet-state blocking of spin-triplet Cooper pairs

An inhomogeneous magnetic exchange field at a superconductor/ferromagnet interface converts spin-singlet Cooper pairs to a spin-aligned (i.e. spin-polarized) triplet state. Although the decay envelope of such triplet pairs within ferromagnetic materials is well studied, little is known about their decay in non-magnetic metals and superconductors, and in particular in the presence of spin-orbit coupling (SOC). Here we investigate devices in which triplet supercurrents are injected into the s-wave superconductor Nb. In the normal state of Nb, triplet supercurrents decay over a distance of 5 nm, which is an order of magnitude smaller than the decay of spin singlet pairs due to the SOC interacting with the spin associated with triplet pairs. In the superconducting state of Nb, triplet supercurrents are not able to couple with the singlet wavefunction and thus blocked by the absence of available equilibrium states in the singlet gap. The results offer new insight into the dynamics between s-wave singlet and s-wave triplet states.

cond-mat.supr-con↗

Automated Multi-Channel Segmentation for the 4D Myocardial Velocity Mapping Cardiac MR

Four-dimensional (4D) left ventricular myocardial velocity mapping (MVM) is a cardiac magnetic resonance (CMR) technique that allows assessment of cardiac motion in three orthogonal directions. Accurate and reproducible delineation of the myocardium is crucial for accurate analysis of peak systolic and diastolic myocardial velocities. In addition to the conventionally available magnitude CMR data, 4D MVM also acquires three velocity-encoded phase datasets which are used to generate velocity maps. These can be used to facilitate and improve myocardial delineation. Based on the success of deep learning in medical image processing, we propose a novel automated framework that improves the standard U-Net based methods on these CMR multi-channel data (magnitude and phase) by cross-channel fusion with attention module and shape information based post-processing to achieve accurate delineation of both epicardium and endocardium contours. To evaluate the results, we employ the widely used Dice scores and the quantification of myocardial longitudinal peak velocities. Our proposed network trained with multi-channel data shows enhanced performance compared to standard U-Net based networks trained with single-channel data. Based on the results, our method provides compelling evidence for the design and application for the multi-channel image analysis of the 4D MVM CMR data.

eess.IV↗

New stable crystal structures of C and GeC2 predicted from first-principles calculations

Two novel three-dimensional (3D) crystal structures of carbon (C) and germanium carbide (GeC2) were predicted using first-principles density-functional theory (DFT) calculations. These newly discovered 3D carbon allotrope and GeC2 are in the space group of Fmmm (space group number 69). Their crystal structures have unique tetragonal/hexagonal rings formed by either C or Ge/C atoms. Both structures were proven to be thermodynamically stable through the phonon spectrum calculations. The C allotrope is a semiconductor with a wide band gap of 3.65 eV predicted by the hybrid density functional HSE06 method, while GeC2 is metallic. The new C allotrope has a low mass density of 2.84 g/cm3. More importantly, it is proven to be energetically stable with cohesive energy less than -7.5 eV/atom which is lower than many other carbon allotropes implying the possibility to be fabricated in lab. Such a carbon crystal structure with a low mass density and wide band gap once synthesized would have wide applications in gas adsorption sensors and photo-electronic devices.

cond-mat.mtrl-sci↗

New stable two dimensional silicon carbide nanosheets

We predict the existence of new two dimensional silicon carbide nanostructure employing ab initio density-functional theory calculations. These structures are composed of tetragonal and hexagonal rings with C-C and Si-C bonds arranged in a buckling plane. They are proven to be thermodynamically and mechanically stable with relatively low formation energy, implying potential fabrication in lab. They exhibit strong ductility and anisotropicity from their strain-stress relation and directional dependence of mechanical moduli. The materials maintain phonon stability upon the application of mechanical strain up to 27% with fantastic ductile property. The SiC2 structure possesses a tiny direct band gap of 0.02 eV predicted using HSE06 functional and the band gap can be opened up through multiple approaches such as hydrogenation and strain application. The gap values can be strategically tuned in the range of 0.02 ~ 1.72 eV and the direct/indirect gap nature can be further manipulated. In contrast, a closely related structure of SiC shows an indirect HSE band gap of 1.80 eV and strain engineering its value between 0.0 ~ 1.95 eV. The unique properties in these newly proposed structures might have potential applications in future nanomechanics and electronics.

cond-mat.mtrl-sci↗

Quantum-limit Hall effect with large carrier density in topological semimetals

The quantum-limit Hall effect at $ν= nh/eB\sim O(1)$ that hosts a variety of exotic quantum phenomena requires demanding strong magnetic field $B$ and low carrier density $n$. We propose to realize quantum-limit Hall effect even in the presence of large carrier density residues $n_e$ and $n_h$ relative to the magnetic field $B$ in topological semimetals, where a single Fermi surface contour allow both electron-type and hole-type carriers and approaches charge neutrality as $n_e\sim n_h$. The underlying filling factor $ν= |n_e-n_h|h/eB$ explicitly violates the Onsager's relation for quantum oscillations.

cond-mat.mes-hall↗