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Guilherme S. Rodrigues

Publications and source records attributed to Guilherme S. Rodrigues.

2 recordsLinked to original sources

Positional Encoder Graph Quantile Neural Networks for Geographic Data

Positional Encoder Graph Neural Networks (PE-GNNs) are among the most effective models for learning from continuous spatial data. However, their predictive distributions are often poorly calibrated, limiting their utility in applications that require reliable uncertainty quantification. We propose the Positional Encoder Graph Quantile Neural Network (PE-GQNN), a novel framework that combines PE-GNNs with Quantile Neural Networks, partially monotonic neural blocks, and post-hoc recalibration techniques. The PE-GQNN enables flexible and robust conditional density estimation with minimal assumptions about the target distribution, and it extends naturally to tasks beyond spatial data. Empirical results on benchmark datasets show that the PE-GQNN outperforms existing methods in both predictive accuracy and uncertainty quantification, without incurring additional computational cost. We also provide theoretical insights and identify important special cases arising from our formulation, including the PE-GNN.

stat.ML

Inferences on the acquisition of multidrug resistance in \emph{Mycobacterium tuberculosis} using molecular epidemiological data

We investigate the rates of drug resistance acquisition in a natural population using molecular epidemiological data from Bolivia. First, we study the rate of direct acquisition of double resistance from the double sensitive state within patients and compare it to the rates of evolution to single resistance. In particular, we address whether or not double resistance can evolve directly from a double sensitive state within a given host. Second, we aim to understand whether the differences in mutation rates to rifampicin and isoniazid resistance translate to the epidemiological scale. Third, we estimate the proportion of MDR TB cases that are due to the transmission of MDR strains compared to acquisition of resistance through evolution. To address these problems we develop a model of TB transmission in which we track the evolution of resistance to two drugs and the evolution of VNTR loci. However, the available data is incomplete, in that it is recorded only {for a fraction of the population and} at a single point in time. The likelihood function induced by the proposed model is computationally prohibitive to evaluate and accordingly impractical to work with directly. We therefore approach statistical inference using approximate Bayesian computation techniques.

q-bio.QM