arXiv subjects

Guillaume St-Onge

Publications and source records attributed to Guillaume St-Onge.

26 records · Page 2Linked to original sources

arXiv2020

Detecting structural perturbations from time series with deep learning

Small disturbances can trigger functional breakdowns in complex systems. A challenging task is to infer the structural cause of a disturbance in a networked system, soon enough to prevent a catastrophe. We present a graph neural network approach, borrowed from the deep learning paradigm, to infer structural perturbations from functional time series. We show our data-driven approach outperforms typical reconstruction methods while meeting the accuracy of Bayesian inference. We validate the versatility and performance of our approach with epidemic spreading, population dynamics, and neural dynamics, on various network structures: random networks, scale-free networks, 25 real food-web systems, and the C. Elegans connectome. Moreover, we report that our approach is robust to data corruption. This work uncovers a practical avenue to study the resilience of real-world complex systems.

physics.soc-ph↗

arXiv2020

Thresholding normally distributed data creates complex networks

Network data sets are often constructed by some kind of thresholding procedure. The resulting networks frequently possess properties such as heavy-tailed degree distributions, clustering, large connected components and short average shortest path lengths. These properties are considered typical of complex networks and appear in many contexts, prompting consideration of their universality. Here we introduce a simple model for correlated relational data and study the network ensemble obtained by thresholding it. We find that some, but not all, of the properties associated with complex networks can be seen after thresholding the correlated data, even though the underlying data are not "complex". In particular, we observe heavy-tailed degree distributions, a large numbers of triangles, and short path lengths, while we do not observe non-vanishing clustering or community structure.

cs.SI↗

arXiv2019

Phase transition in the recoverability of network history

Network growth processes can be understood as generative models of the structure and history of complex networks. This point of view naturally leads to the problem of network archaeology: reconstructing all the past states of a network from its structure---a difficult permutation inference problem. In this paper, we introduce a Bayesian formulation of network archaeology, with a generalization of preferential attachment as our generative mechanism. We develop a sequential Monte Carlo algorithm to evaluate the posterior averages of this model, as well as an efficient heuristic that uncovers a history well correlated with the true one, in polynomial time. We use these methods to identify and characterize a phase transition in the quality of the reconstructed history, when they are applied to artificial networks generated by the model itself. Despite the existence of a no-recovery phase, we find that nontrivial inference is possible in a large portion of the parameter space as well as on empirical data.

physics.soc-ph↗

arXiv2019

Efficient sampling of spreading processes on complex networks using a composition and rejection algorithm

Efficient stochastic simulation algorithms are of paramount importance to the study of spreading phenomena on complex networks. Using insights and analytical results from network science, we discuss how the structure of contacts affects the efficiency of current algorithms. We show that algorithms believed to require $\mathcal{O}(\log N)$ or even $\mathcal{O}(1)$ operations per update---where $N$ is the number of nodes---display instead a polynomial scaling for networks that are either dense or sparse and heterogeneous. This significantly affects the required computation time for simulations on large networks. To circumvent the issue, we propose a node-based method combined with a composition and rejection algorithm, a sampling scheme that has an average-case complexity of $\mathcal{O} [\log(\log N)]$ per update for general networks. This systematic approach is first set-up for Markovian dynamics, but can also be adapted to a number of non-Markovian processes and can enhance considerably the study of a wide range of dynamics on networks.

physics.soc-ph↗

arXiv2018

Universality of the stochastic block model

Mesoscopic pattern extraction (MPE) is the problem of finding a partition of the nodes of a complex network that maximizes some objective function. Many well-known network inference problems fall in this category, including, for instance, community detection, core-periphery identification, and imperfect graph coloring. In this paper, we show that the most popular algorithms designed to solve MPE problems can in fact be understood as special cases of the maximum likelihood formulation of the stochastic block model (SBM), or one of its direct generalizations. These equivalence relations show that the SBM is nearly universal with respect to MPE problems.

physics.soc-ph↗

arXiv2018

Phase transition of the susceptible-infected-susceptible dynamics on time-varying configuration model networks

We present a degree-based theoretical framework to study the susceptible-infected-susceptible (SIS) dynamics on time-varying (rewired) configuration model networks. Using this framework, we provide a detailed analysis of the stationary state that covers, for a given structure, every dynamic regimes easily tuned by the rewiring rate. This analysis is suitable for the characterization of the phase transition and leads to three main contributions. (i) We obtain a self-consistent expression for the absorbing-state threshold, able to capture both collective and hub activation. (ii) We recover the predictions of a number of existing approaches as limiting cases of our analysis, providing thereby a unifying point of view for the SIS dynamics on random networks. (iii) We reinterpret the concept of hub-dominated phase transition. Within our framework, it appears as a heterogeneous critical phenomenon : observables for different degree classes have a different scaling with the infection rate. This leads to the successive activation of the degree classes beyond the epidemic threshold.

physics.soc-ph↗

arXiv2017

Geometric evolution of complex networks

We present a general class of geometric network growth mechanisms by homogeneous attachment in which the links created at a given time $t$ are distributed homogeneously between a new node and the exising nodes selected uniformly. This is achieved by creating links between nodes uniformly distributed in a homogeneous metric space according to a Fermi-Dirac connection probability with inverse temperature $β$ and general time-dependent chemical potential $μ(t)$. The chemical potential limits the spatial extent of newly created links. Using a hidden variable framework, we obtain an analytical expression for the degree sequence and show that $μ(t)$ can be fixed to yield any given degree distributions, including a scale-free degree distribution. Additionally, we find that depending on the order in which nodes appear in the network---its $\textit{history}$---the degree-degree correlation can be tuned to be assortative or disassortative. The effect of the geometry on the structure is investigated through the average clustering coefficient $\langle c \rangle$. In the thermodynamic limit, we identify a phase transition between a random regime where $\langle c \rangle \rightarrow 0$ when $β< β_\mathrm{c}$ and a geometric regime where $\langle c \rangle > 0$ when $β> β_\mathrm{c}$.

physics.soc-ph↗

arXiv2017

Susceptible-infected-susceptible dynamics on the rewired configuration model

We investigate the susceptible-infected-susceptible dynamics on configuration model networks. In an effort for the unification of current approaches, we consider a network whose edges are constantly being rearranged, with a tunable rewiring rate $ω$. We perform a detailed stationary state analysis of the process, leading to a closed form expression of the absorbing-state threshold for an arbitrary rewiring rate. In both extreme regimes (annealed and quasi-static), we recover and further improve the results of current approaches, as well as providing a natural interpolation for the intermediate regimes. For any finite $ω$, our analysis predicts a vanishing threshold when the maximal degree $k_\mathrm{max} \to \infty$, a generalization of the result obtained with quenched mean-field theory for static networks.

physics.soc-ph↗