Gyu Ho Bae | Searcharxiv

arXiv2019

Agent-Based Simulation of the Two-Dimensional Patlak-Keller-Segel Model

The Patlak-Keller-Segel equation describes the chemotactic interactions of small organisms in the continuum limit, and a singular peak appears through spontaneous aggregation when the total mass of the organisms exceeds a critical value. To deal with this singular behavior numerically, we propose an agent-based simulation method in which both the organisms and the chemicals are represented as particles. Our numerical estimates for the threshold behavior are consistent with the analytic predictions.

cond-mat.stat-mech↗

arXiv2019

Discontinuous phase transition in chemotactic aggregation with density-dependent pressure

Many small organisms such as bacteria can attract each other by depositing chemical attractants. At the same time, they exert repulsive force on each other when crowded, which can be modeled by effective pressure as an increasing function of the organisms' density. As the chemical attraction becomes strong compared to the effective pressure, the system will undergo a phase transition from homogeneous distribution to aggregation. In this work, we describe the interplay of organisms and chemicals on a two-dimensional disk with a set of partial differential equations of the Patlak-Keller-Segel type. By analyzing its Lyapunov functional, we show that the aggregation transition occurs discontinuously, forming an aggregate near the boundary of the disk. The result can be interpreted within a thermodynamic framework by identifying the Lyapunov functional with free energy.

cond-mat.stat-mech↗