arXiv subjects

H Juliette T Unwin

Publications and source records attributed to H Juliette T Unwin.

4 recordsLinked to original sources

arXiv2026

Enhancing the KidSat Model: Integrating Geographical Encoding and Data Quality Assessment for Childhood Poverty Prediction

Accurate poverty mapping using satellite imagery is often hindered by (i) noisy and sparse survey-derived supervision, (ii) image quality issues such as cloud cover and image corruption, and (iii) lack of explicit spatial structure in image-only models. Building on the KidSat framework, we develop an enhanced pipeline that improves predictive accuracy via refined data preprocessing, systematic image quality assessment, and mathematically defined geographic encoding. First, we refine the fine-tuning target matrix by resolving high-cardinality sparsity and reducing one-hot dimensionality from 103 to 51 via DHS re-aggregation. Second, we introduce a simple two-stage quality-screening procedure to filter heavily clouded or corrupted observations. Third, we fuse DINOv2 visual embeddings with Spherical Harmonics (SH) location features. Across extensive experiments, these changes reduce MAE from 0.2167 to 0.1759, corresponding to an 18.83% relative reduction on the cluster-level severe-deprivation proportion scale. When extended from 16 to 33 African countries, the best-performing configuration achieves an overall MAE of 0.1658. We find that SH features consistently improve performance over the image-only backbone, whereas higher-capacity coordinate Multi Layer Perception augmentation (SH+SIREN) can underperform without carefully designed objectives. Finally, gradient-boosted tree heads (XGBoost/LightGBM) most effectively exploit nonlinear interactions in the fused visual-geographic representation. These findings provide a scalable and principled recipe for improving satellite-based socioeconomic predictions using only publicly accessible data.

cs.CV↗

arXiv2023

Deep learning and MCMC with aggVAE for shifting administrative boundaries: mapping malaria prevalence in Kenya

Model-based disease mapping remains a fundamental policy-informing tool in the fields of public health and disease surveillance. Hierarchical Bayesian models have emerged as the state-of-the-art approach for disease mapping since they are able to both capture structure in the data and robustly characterise uncertainty. When working with areal data, e.g.~aggregates at the administrative unit level such as district or province, current models rely on the adjacency structure of areal units to account for spatial correlations and perform shrinkage. The goal of disease surveillance systems is to track disease outcomes over time. This task is especially challenging in crisis situations which often lead to redrawn administrative boundaries, meaning that data collected before and after the crisis are no longer directly comparable. Moreover, the adjacency-based approach ignores the continuous nature of spatial processes and cannot solve the change-of-support problem, i.e.~when estimates are required to be produced at different administrative levels or levels of aggregation. We present a novel, practical, and easy to implement solution to solve these problems relying on a methodology combining deep generative modelling and fully Bayesian inference: we build on the recently proposed PriorVAE method able to encode spatial priors over small areas with variational autoencoders by encoding aggregates over administrative units. We map malaria prevalence in Kenya, a country in which administrative boundaries changed in 2010.

cs.LG↗

arXiv2023

A comparison of short-term probabilistic forecasts for the incidence of COVID-19 using mechanistic and statistical time series models

Short-term forecasts of infectious disease spread are a critical component in risk evaluation and public health decision making. While different models for short-term forecasting have been developed, open questions about their relative performance remain. Here, we compare short-term probabilistic forecasts of popular mechanistic models based on the renewal equation with forecasts of statistical time series models. Our empirical comparison is based on data of the daily incidence of COVID-19 across six large US states over the first pandemic year. We find that, on average, probabilistic forecasts from statistical time series models are overall at least as accurate as forecasts from mechanistic models. Moreover, statistical time series models better capture volatility. Our findings suggest that domain knowledge, which is integrated into mechanistic models by making assumptions about disease dynamics, does not improve short-term forecasts of disease incidence. We note, however, that forecasting is often only one of many objectives and thus mechanistic models remain important, for example, to model the impact of vaccines or the emergence of new variants.

stat.AP↗

arXiv2020

Estimating the number of infections and the impact of non-pharmaceutical interventions on COVID-19 in European countries: technical description update

Following the emergence of a novel coronavirus (SARS-CoV-2) and its spread outside of China, Europe has experienced large epidemics. In response, many European countries have implemented unprecedented non-pharmaceutical interventions including case isolation, the closure of schools and universities, banning of mass gatherings and/or public events, and most recently, wide-scale social distancing including local and national lockdowns. In this technical update, we extend a semi-mechanistic Bayesian hierarchical model that infers the impact of these interventions and estimates the number of infections over time. Our methods assume that changes in the reproductive number - a measure of transmission - are an immediate response to these interventions being implemented rather than broader gradual changes in behaviour. Our model estimates these changes by calculating backwards from temporal data on observed to estimate the number of infections and rate of transmission that occurred several weeks prior, allowing for a probabilistic time lag between infection and death. In this update we extend our original model [Flaxman, Mishra, Gandy et al 2020, Report #13, Imperial College London] to include (a) population saturation effects, (b) prior uncertainty on the infection fatality ratio, (c) a more balanced prior on intervention effects and (d) partial pooling of the lockdown intervention covariate. We also (e) included another 3 countries (Greece, the Netherlands and Portugal). The model code is available at https://github.com/ImperialCollegeLondon/covid19model/ We are now reporting the results of our updated model online at https://mrc-ide.github.io/covid19estimates/ We estimated parameters jointly for all M=14 countries in a single hierarchical model. Inference is performed in the probabilistic programming language Stan using an adaptive Hamiltonian Monte Carlo (HMC) sampler.

stat.AP↗