arXiv subjects

Hajime Shinohara

Publications and source records attributed to Hajime Shinohara.

3 recordsLinked to original sources

arXiv2024

SELF-BART : A Transformer-based Molecular Representation Model using SELFIES

Large-scale molecular representation methods have revolutionized applications in material science, such as drug discovery, chemical modeling, and material design. With the rise of transformers, models now learn representations directly from molecular structures. In this study, we develop an encoder-decoder model based on BART that is capable of leaning molecular representations and generate new molecules. Trained on SELFIES, a robust molecular string representation, our model outperforms existing baselines in downstream tasks, demonstrating its potential in efficient and effective molecular data analysis and manipulation.

cs.CE↗

arXiv2024

Improving Performance Prediction of Electrolyte Formulations with Transformer-based Molecular Representation Model

Development of efficient and high-performing electrolytes is crucial for advancing energy storage technologies, particularly in batteries. Predicting the performance of battery electrolytes rely on complex interactions between the individual constituents. Consequently, a strategy that adeptly captures these relationships and forms a robust representation of the formulation is essential for integrating with machine learning models to predict properties accurately. In this paper, we introduce a novel approach leveraging a transformer-based molecular representation model to effectively and efficiently capture the representation of electrolyte formulations. The performance of the proposed approach is evaluated on two battery property prediction tasks and the results show superior performance compared to the state-of-the-art methods.

cs.LG↗

arXiv2023

MHG-GNN: Combination of Molecular Hypergraph Grammar with Graph Neural Network

Property prediction plays an important role in material discovery. As an initial step to eventually develop a foundation model for material science, we introduce a new autoencoder called the MHG-GNN, which combines graph neural network (GNN) with Molecular Hypergraph Grammar (MHG). Results on a variety of property prediction tasks with diverse materials show that MHG-GNN is promising.

cs.LG↗