arXiv subjects

Hamed Azami

Publications and source records attributed to Hamed Azami.

7 recordsLinked to original sources

arXiv2019

Multiscale Fluctuation-based Dispersion Entropy and its Applications to Neurological Diseases

Fluctuation-based dispersion entropy (FDispEn) is a new approach to estimate the dynamical variability of the fluctuations of signals. It is based on Shannon entropy and fluctuation-based dispersion patterns. To quantify the physiological dynamics over multiple time scales, multiscale FDispEn (MFDE) is developed in this article. MFDE is robust to the presence of baseline wanders, or trends, in the data. We evaluate MFDE, compared with popular multiscale sample entropy (MSE), and the recently introduced multiscale dispersion entropy (MDE), on selected synthetic data and five neurological diseases' datasets: 1) focal and non-focal electroencephalograms (EEGs); 2) walking stride interval signals for young, elderly, and Parkinson's subjects; 3) stride interval fluctuations for Huntington's disease and amyotrophic lateral sclerosis; 4) EEGs for controls and Alzheimer's disease patients; and 5) eye movement data for Parkinson's disease and ataxia. MFDE dealt with the problem of undefined MSE values and, compared with MDE, led to more stable entropy values over the scale factors for pink noise. Overall, MFDE was the fastest and most consistent method for the discrimination of different states of neurological data, especially where the mean value of a time series considerably changes along the signal (e.g., eye movement data). This study shows that MFDE is a relevant new metric to gain further insights into the dynamics of neurological diseases recordings.

q-bio.NC↗

arXiv2017

Amplitude- and Frequency-based Dispersion Patterns and Entropy

Permutation patterns-based approaches, such as permutation entropy (PerEn), have been widely and successfully used to analyze data. However, these methods have two main shortcomings. First, when a series is symbolized based on permutation patterns, repetition as an unavoidable phenomenon in data is not took in to account. Second, they consider only the order of amplitude values and so, some information regarding the amplitude values themselves may be ignored. To address these deficiencies, we have very recently introduced dispersion patterns and subsequently, dispersion entropy (DispEn). In this paper, we investigate the effect of different linear and non-linear mapping approaches, used in the algorithm of DispEn, on the characterization of signals. We also inspect the sensitivity of different parameters of DispEn to noise. Moreover, we introduce frequency-based DispEn (FDispEn) as a measure to deal with only the frequency of time series. The results suggest that DispEn and FDispEn with the log-sigmoid mapping approach, unlike PerEn, can detect outliers. Furthermore, the original and frequency-based forbidden dispersion patterns are introduced to discriminate deterministic from stochastic time series. The computation times show that DispEn and FDispEn are considerably faster than PerEn. Finally, we find that DispEn and FDispEn outperform PerEn to distinguish various dynamics of biomedical signals. Due to their advantages over existing entropy methods, DispEn and FDispEn are expected to be widely used for the characterization of a wide variety of real-world time series.

cs.IT↗

arXiv2017

Multivariate Multiscale Dispersion Entropy of Biomedical Times Series

Objective: Due to the non-linearity of numerous biomedical signals, non-linear analysis of multi-channel time series, notably multivariate multiscale entropy (mvMSE), has been extensively used in biomedical signal processing. However, mvMSE has three drawbacks: 1) mvMSE values are either undefined or unreliable for short signals; 2) mvMSE is not fast enough for real-time applications; and 3) the computation of mvMSE for signals with a large number of channels requires the storage of a huge number of elements. Methods: To deal with these problems and improve the stability of mvMSE, we introduce multivariate multiscale dispersion entropy (MDE - mvMDE) as an extension of our recently developed MDE, to quantify the complexity of multivariate time series. Results: We assess mvMDE, in comparison with mvMSE and multivariate multiscale fuzzy entropy (mvMFE), on correlated and uncorrelated multi-channel noise signals, bivariate autoregressive processes, and three biomedical datasets. The results show that mvMDE takes into account dependencies in patterns across both the time and spatial domains. The mvMDE, mvMSE, and mvMFE methods are consistent in that they lead to similar conclusions about the underlying physiological conditions. However, the proposed mvMDE discriminates various physiological states of the biomedical recordings better than mvMSE and mvMFE. In addition, for both the short and long time series, the mvMDE-based results are noticeably more stable than the mvMSE- and mvMFE-based ones. Conclusion: For short multivariate time series, mvMDE, unlike mvMSE, does not result in undefined values. Furthermore, mvMDE is noticeably faster than mvMFE and mvMSE and also needs to store a considerably smaller number of elements. Significance: Due to its ability to detect different kinds of dynamics of multivariate signals, mvMDE has great potential to analyse various physiological signals.

q-bio.QM↗

arXiv2016

Refined Composite Multiscale Dispersion Entropy and its Application to Biomedical Signals

Multiscale entropy (MSE) is a widely-used tool to analyze biomedical signals. It was proposed to overcome the deficiencies of conventional entropy methods when quantifying the complexity of time series. However, MSE is undefined for very short signals and slow for real-time applications because of the use of sample entropy (SampEn). To overcome these shortcomings, we introduce multiscale dispersion entropy (DisEn - MDE) as a very fast and powerful method to quantify the complexity of signals. MDE is based on our recently developed DisEn, which has a computation cost of O(N), compared with O(N2) for SampEn. We also propose the refined composite MDE (RCMDE) to improve the stability of MDE. We evaluate MDE, RCMDE, and refined composite MSE (RCMSE) on synthetic signals and find that these methods have similar behaviors but the MDE and RCMDE are significantly faster than MSE and RCMSE, respectively. The results also illustrate that RCMDE is more stable than MDE for short and noisy signals, which are common in biomedical applications. To evaluate the proposed methods on real signals, we employ three biomedical datasets, including focal and non-focal electroencephalograms (EEGs), blood pressure recordings in Fantasia database, and resting-state EEGs activity in Alzheimer's disease (AD). The results again demonstrate a similar behavior of RCMSE, MDE and RCMDE, although the RCMDE and MDE are significantly faster and lead to larger differences between physiological conditions known to alter the complexity of the physiological recordings. To sum up, MDE and RCMDE are expected to be useful for the analysis of physiological signals thanks to their ability to distinguish different types of dynamics.

cs.IT↗

arXiv2016

Comparison of Network Analysis Approaches on EEG Connectivity in Beta during Visual Short-Term Memory Binding Tasks

We analyse the electroencephalogram signals in the beta band of working memory representation recorded from young healthy volunteers performing several different Visual Short-Term Memory (VSTM) tasks which have proven useful in the assessment of clinical and preclinical Alzheimer's disease. We compare network analysis using Maximum Spanning Trees (MSTs) with network analysis obtained using 20% and 25% connection thresholds on the VSTM data. MSTs are a promising method of network analysis negating the more classical use of thresholds which are so far chosen arbitrarily. However, we find that the threshold analyses outperforms MSTs for detection of functional network differences. Particularly, MSTs fail to find any significant differences. Further, the thresholds detect significant differences between shape and shape-colour binding tasks when these are tested in the left side of the display screen, but no such differences are detected when these tasks are tested for in the right side of the display screen. This provides evidence that contralateral activity is a significant factor in sensitivity for detection of cognitive task differences.

q-bio.NC↗

arXiv2016

Cluster-Span Threshold: An unbiased threshold for binarising weighted complete networks in functional connectivity analysis

We propose a new unbiased threshold for network analysis named the Cluster-Span Threshold (CST). This is based on the clustering coefficient, C, following logic that a balance of `clustering' to `spanning' triples results in a useful topology for network analysis and that the product of complementing properties has a unique value only when perfectly balanced. We threshold networks by fixing C at this balanced value, rather than fixing connection density at an arbitrary value, as has been the trend. We compare results from an electroencephalogram data set of volunteers performing visual short term memory tasks of the CST alongside other thresholds, including maximum spanning trees. We find that the CST holds as a sensitive threshold for distinguishing differences in the functional connectivity between tasks. This provides a sensitive and objective method for setting a threshold on weighted complete networks which may prove influential on the future of functional connectivity research.

q-bio.NC↗

arXiv2016

Refined Multiscale Fuzzy Entropy based on Standard Deviation for Biomedical Signal Analysis

Multiscale entropy (MSE) has been a prevalent algorithm to quantify the complexity of fluctuations in the local mean value of biomedical time series. Recent developments in the field have tried to improve the MSE by reducing its variability in large scale factors. On the other hand, there has been recent interest in using other statistical moments than the mean, i.e. variance, in the coarse-graining step of the MSE. Building on these trends, here we introduce the so-called refined composite multiscale fuzzy entropy based on the standard deviation (RCMFE{\sigma}) to quantify the dynamical properties of spread over multiple time scales. We demonstrate the dependency of the RCMFE{\sigma}, in comparison with other multiscale approaches, on several straightforward signal processing concepts using a set of synthetic signals. We also investigate the complementarity of using the standard deviation instead of the mean in the coarse-graining process using magnetoencephalograms in Alzheimer disease and publicly available electroencephalograms recorded from focal and non-focal areas in epilepsy. Our results indicate that RCMFE{\sigma} offers complementary information to that revealed by classical coarse-graining approaches and that it has superior performance to distinguish different types of physiological activity.

cs.CE↗