Searcharxiv⌕ Search

arXiv subjects

Han Mao Kiah

Publications and source records attributed to Han Mao Kiah.

At least 73 records · Page 4Linked to original sources

Repairing Reed-Solomon Codes With Two Erasures

Despite their exceptional error-correcting properties, Reed-Solomon (RS) codes have been overlooked in distributed storage applications due to the common belief that they have poor repair bandwidth: A naive repair approach would require the whole file to be reconstructed in order to recover a single erased codeword symbol. In a recent work, Guruswami and Wootters (STOC'16) proposed a single-erasure repair method for RS codes that achieves the optimal repair bandwidth amongst all linear encoding schemes. We extend their trace collection technique to cope with two erasures.

cs.IT↗

Coding for Racetrack Memories

Racetrack memory is a new technology which utilizes magnetic domains along a nanoscopic wire in order to obtain extremely high storage density. In racetrack memory, each magnetic domain can store a single bit of information, which can be sensed by a reading port (head). The memory has a tape-like structure which supports a shift operation that moves the domains to be read sequentially by the head. In order to increase the memory's speed, prior work studied how to minimize the latency of the shift operation, while the no less important reliability of this operation has received only a little attention. In this work we design codes which combat shift errors in racetrack memory, called position errors. Namely, shifting the domains is not an error-free operation and the domains may be over-shifted or are not shifted, which can be modeled as deletions and sticky insertions. While it is possible to use conventional deletion and insertion-correcting codes, we tackle this problem with the special structure of racetrack memory, where the domains can be read by multiple heads. Each head outputs a noisy version of the stored data and the multiple outputs are combined in order to reconstruct the data. Under this paradigm, we will show that it is possible to correct, with at most a single bit of redundancy, $d$ deletions with $d+1$ heads if the heads are well-separated. Similar results are provided for burst of deletions, sticky insertions and combinations of both deletions and sticky insertions.

cs.IT↗

Bounds on the Size and Asymptotic Rate of Subblock-Constrained Codes

The study of subblock-constrained codes has recently gained attention due to their application in diverse fields. We present bounds on the size and asymptotic rate for two classes of subblock-constrained codes. The first class is binary constant subblock-composition codes (CSCCs), where each codeword is partitioned into equal sized subblocks, and every subblock has the same fixed weight. The second class is binary subblock energy-constrained codes (SECCs), where the weight of every subblock exceeds a given threshold. We present novel upper and lower bounds on the code sizes and asymptotic rates for binary CSCCs and SECCs. For a fixed subblock length and small relative distance, we show that the asymptotic rate for CSCCs (resp. SECCs) is strictly lower than the corresponding rate for constant weight codes (CWCs) (resp. heavy weight codes (HWCs)). Further, for codes with high weight and low relative distance, we show that the asymptotic rates for CSCCs is strictly lower than that of SECCs, which contrasts that the asymptotic rate for CWCs is equal to that of HWCs. We also provide a correction to an earlier result by Chee et al. (2014) on the asymptotic CSCC rate. Additionally, we present several numerical examples comparing the rates for CSCCs and SECCs with those for constant weight codes and heavy weight codes.

cs.IT↗

Asymmetric Lee Distance Codes for DNA-Based Storage

We consider a new family of codes, termed asymmetric Lee distance codes, that arise in the design and implementation of DNA-based storage systems and systems with parallel string transmission protocols. The codewords are defined over a quaternary alphabet, although the results carry over to other alphabet sizes; furthermore, symbol confusability is dictated by their underlying binary representation. Our contributions are two-fold. First, we demonstrate that the new distance represents a linear combination of the Lee and Hamming distance and derive upper bounds on the size of the codes under this metric based on linear programming techniques. Second, we propose a number of code constructions which imply lower bounds.

cs.IT↗

Rates of DNA Sequence Profiles for Practical Values of Read Lengths

A recent study by one of the authors has demonstrated the importance of profile vectors in DNA-based data storage. We provide exact values and lower bounds on the number of profile vectors for finite values of alphabet size $q$, read length $\ell$, and word length $n$.Consequently, we demonstrate that for $q\ge 2$ and $n\le q^{\ell/2-1}$, the number of profile vectors is at least $q^{κn}$ with $κ$ very close to one.In addition to enumeration results, we provide a set of efficient encoding and decoding algorithms for each of two particular families of profile vectors.

cs.IT↗

Weakly Mutually Uncorrelated Codes

We introduce the notion of weakly mutually uncorrelated (WMU) sequences, motivated by applications in DNA-based storage systems and synchronization protocols. WMU sequences are characterized by the property that no sufficiently long suffix of one sequence is the prefix of the same or another sequence. In addition, WMU sequences used in DNA-based storage systems are required to have balanced compositions of symbols and to be at large mutual Hamming distance from each other. We present a number of constructions for balanced, error-correcting WMU codes using Dyck paths, Knuth's balancing principle, prefix synchronized and cyclic codes.

cs.IT↗

Codes for DNA Storage Channels

We consider the problem of assembling a sequence based on a collection of its substrings observed through a noisy channel. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on a collection of their substrings observed through a noisy channel. We explain the connection between the sequence reconstruction problem and the problem of DNA synthesis and sequencing, and introduce the notion of a DNA storage channel. We analyze the number of sequence equivalence classes under the channel mapping and propose new asymmetric coding techniques to combat the effects of synthesis and sequencing noise. In our analysis, we make use of restricted de Bruijn graphs and Ehrhart theory for rational polytopes.

cs.IT↗

DNA-Based Storage: Trends and Methods

We provide an overview of current approaches to DNA-based storage system design and accompanying synthesis, sequencing and editing methods. We also introduce and analyze a suite of new constrained coding schemes for both archival and random access DNA storage channels. The mathematical basis of our work is the construction and design of sequences over discrete alphabets that avoid pre-specified address patterns, have balanced base content, and exhibit other relevant substring constraints. These schemes adapt the stored signals to the DNA medium and thereby reduce the inherent error-rate of the system.

cs.ET↗

Product Construction of Affine Codes

Binary matrix codes with restricted row and column weights are a desirable method of coded modulation for power line communication. In this work, we construct such matrix codes that are obtained as products of affine codes - cosets of binary linear codes. Additionally, the constructions have the property that they are systematic. Subsequently, we generalize our construction to irregular product of affine codes, where the component codes are affine codes of different rates.

cs.IT↗

Local Codes with Addition Based Repair

We consider the complexities of repair algorithms for locally repairable codes and propose a class of codes that repair single node failures using addition operations only, or codes with addition based repair. We construct two families of codes with addition based repair. The first family attains distance one less than the Singleton-like upper bound, while the second family attains the Singleton-like upper bound.

cs.IT↗

Locally Encodable and Decodable Codes for Distributed Storage Systems

We consider the locality of encoding and decoding operations in distributed storage systems (DSS), and propose a new class of codes, called locally encodable and decodable codes (LEDC), that provides a higher degree of operational locality compared to currently known codes. For a given locality structure, we derive an upper bound on the global distance and demonstrate the existence of an optimal LEDC for sufficiently large field size. In addition, we also construct two families of optimal LEDC for fields with size linear in code length.

cs.IT↗

Codes for DNA Sequence Profiles

We consider the problem of storing and retrieving information from synthetic DNA media. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on their collection of substrings observed through a noisy channel. This problem of reconstructing sequences from traces was first investigated in the noiseless setting under the name of "Markov type" analysis. Here, we explain the connection between the reconstruction problem and the problem of DNA synthesis and sequencing, and introduce the notion of a DNA storage channel. We analyze the number of sequence equivalence classes under the channel mapping and propose new asymmetric coding techniques to combat the effects of synthesis and sequencing noise. In our analysis, we make use of restricted de Bruijn graphs and Ehrhart theory for rational polytopes.

cs.IT↗

Constructions of Optimal and Near-Optimal Multiply Constant-Weight Codes

Multiply constant-weight codes (MCWCs) have been recently studied to improve the reliability of certain physically unclonable function response. In this paper, we give combinatorial constructions for MCWCs which yield several new infinite families of optimal MCWCs. Furthermore, we demonstrate that the Johnson type upper bounds of MCWCs are asymptotically tight for fixed weights and distances. Finally, we provide bounds and constructions of two dimensional MCWCs.

cs.IT↗

Synchronizing Edits in Distributed Storage Networks

We consider the problem of synchronizing data in distributed storage networks under an edit model that includes deletions and insertions. We present two modifications of MDS, regenerating and locally repairable codes that allow updates in the parity-check values to be performed with one round of communication at low bit rates and using small storage overhead. Our main contributions are novel protocols for synchronizing both hot and semi-static data and protocols for data deduplication applications, based on intermediary permutation, Vandermonde and Cauchy matrix coding.

cs.IT↗

Generalized Balanced Tournament Packings and Optimal Equitable Symbol Weight Codes for Power Line Communications

Generalized balance tournament packings (GBTPs) extend the concept of generalized balanced tournament designs introduced by Lamken and Vanstone (1989). In this paper, we establish the connection between GBTPs and a class of codes called equitable symbol weight codes. The latter were recently demonstrated to optimize the performance against narrowband noise in a general coded modulation scheme for power line communications. By constructing classes of GBTPs, we establish infinite families of optimal equitable symbol weight codes with code lengths greater than alphabet size and whose narrowband noise error-correcting capability to code length ratios do not diminish to zero as the length grows.

math.CO↗

Multiply Constant-Weight Codes and the Reliability of Loop Physically Unclonable Functions

We introduce the class of multiply constant-weight codes to improve the reliability of certain physically unclonable function (PUF) response. We extend classical coding methods to construct multiply constant-weight codes from known $q$-ary and constant-weight codes. Analogues of Johnson bounds are derived and are shown to be asymptotically tight to a constant factor under certain conditions. We also examine the rates of the multiply constant-weight codes and interestingly, demonstrate that these rates are the same as those of constant-weight codes of suitable parameters. Asymptotic analysis of our code constructions is provided.

cs.IT↗

Importance of Symbol Equity in Coded Modulation for Power Line Communications

The use of multiple frequency shift keying modulation with permutation codes addresses the problem of permanent narrowband noise disturbance in a power line communications system. In this paper, we extend this coded modulation scheme based on permutation codes to general codes and introduce an additional new parameter that more precisely captures a code's performance against permanent narrowband noise. As a result, we define a new class of codes, namely, equitable symbol weight codes, which are optimal with respect to this measure.

cs.IT↗