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Hannes Uecker

Publications and source records attributed to Hannes Uecker.

At least 19 recordsLinked to original sources

Breathing and moving vesicles in a geometric mechanochemical model

We consider a geometric mechanochemical model of vesicles which couples the Helfrich flow for the shape of a lipid bilayer vesicle membrane $X$ with a reaction-diffusion equations for a single ``morphogen'' $\phi$ on $X$. The Helfrich flow is the $L^2$ gradient flow of the elastic bending energy $E(X)=\int_X (H-c_0)^2 dS$ of $X$, typically supplemented by area or volume constraints, or both. The morphogen $\phi$ adsorbs/desorbs at places of high/low mean curvature $H$, i.e., the kinetics of $\phi$ depend on $H$, and conversely $\phi$ modifies the spontaneous curvature $c_0$ on $X$. The flow is no longer gradient, and hence allows for more complicated dynamics, including time periodic orbits, e.g., ``breathing and moving'' vesicle shapes. We show how to compute bifurcation diagrams for such solution branches via numerical continuation and bifurcation methods. We mostly focus on ``planar'' vesicles (1D closed curves) but also give an outlook on 3D vesicles (2D closed membranes).

math.AP

Busse balloon deformation and splitting by non-local interaction: the influence of grazing on a Klausmeier vegetation model

Large areas on all continents except Antarctica are covered by dryland vegetation patterns, with wavelengths typically in the range of tens of meters. In models, many wavelengths are simultaneously stable, and we argue that this multi-stability also holds for real world patterns. We then study the shape of the Busse balloon representation of multi-stability for a previously introduced Klausmeier model with non-local grazing. For this we first extend application of singular perturbation to Klausmeier/Gray-Scott models to include non-local interaction, providing analytical control near the homoclinic limit, and then use numerical continuation to demonstrate deformation of Busse balloons away from the typical banana shape, in four non-local grazing regimes. Since the Busse balloon has been invoked to support "evasion of tipping", we underscore the importance of the shape of the Busse balloon when inferring ecosystem response to, e.g., climate change.

math.DS

Electrolyte flows under magnetic fields: Manning-like counterion condensation in one dimension

We present a theoretical framework for unidirectional electromagnetohydrodynamic flow of dilute electrolytes under perpendicular magnetic fields. Starting from the Navier--Stokes equation coupled with the Poisson--Nernst--Planck formulation, we show that the problem admits a sequential decoupling: the Stokes equation is solved first to obtain the velocity profile, which defines a hydrodynamic potential entering the Nernst--Planck description of ions. This Lorentz-force-induced potential competes with electrostatic attraction and significantly alters ionic distributions. We analyze this mechanism in two canonical geometries. In planar Couette shear, it produces a Manning--Oosawa-like condensation transition in one dimension, a phenomenon absent in classical electrostatics. We derive an eigenvalue equation predicting a sharp threshold between counterion enrichment and depletion at the charged wall. In cylindrical Taylor--Couette flow, the same effect shifts the classical Manning criterion by a magnetic parameter, enabling tunable control of condensation. These findings extend Manning--Oosawa phenomenology to driven, non-equilibrium systems and provide a basis for magnetic manipulation of screening in electrolytes, with implications for microfluidics, electrochemical systems, and nonlinear boundary-value theory.

physics.flu-dyn

Conditions for spatial instabilities and pattern formation from monomial steady state parameterizations

We study the onset of spatial instabilities in reaction networks where the spatially homogeneous system admits a steady state parameterization. We formulate a sufficient condition -- based on the signs of the constant and leading coefficients of the characteristic polynomial of the linearized Jacobian scaled by the diffusion coefficients -- that guarantees a Turing-like instability to spatially inhomogeneous solutions on appropriately chosen domains $\Omega$. We also present a specific condition on the domain size $|\Omega|$ required to trigger this instability. As a consequence of employing a monomial parameterization, these conditions take the form of algebraic polynomial inequalities involving only rate constants and diffusion coefficients. We apply these ideas to a network describing the sequential and distributive (de-)phosphorylation of a protein at two binding sites, ultimately deriving a condition involving only the four catalytic constants of the enzymes and the diffusion coefficients of the four enzyme-substrate complexes that guarantees a Turing-like instability.

math.DS

Localized spatiotemporal reaction-diffusion patterns on a line and a disk arising from a subcritical finite wavenumber Hopf instability

Spatiotemporal localized and extended structures associated with a subcritical finite wavenumber Hopf bifurcation are studied in the Purwins model (a three-variable FitzHugh-Nagumo version). Steady and time-dependent numerical continuation procedures are used to investigate snaking behavior of localized standing and traveling waves on the real line, and the results are corroborated using weakly nonlinear theory. The results shed light on the origin of so-called jumping oscillons and the organization of a nontypical homoclinic snaking structure of traveling pulses. The computations are extended to moderate size disks and used to identify wall-attached spots that travel along the disk boundary as well as wall-attached spots that oscillate in place and wall-attached jumping oscillons. The one-dimensional results are shown to be useful in interpreting the two-dimensional results. Domain-filling and mixed structures are also studied, demonstrating the variety of extended and localized states that emerge in two-space dimensions, ranging from periodic to disordered. The latter are potentially important for observations of waves in far-from-equilibrium media, such as those often observed in cell biology.

nlin.PS

Helfrich cylinders -- instabilities, bifurcations and amplitude equations

Combining local bifurcation analysis with numerical continuation and bifurcation methods we study bifurcations from cylindrical vesicles described by the Helfrich equation with volume and area constraints, with a prescribed periodicity along the cylindrical axis. The bifurcating solutions are in two main classes, axisymmetric (pearling), and non-axisymmetric (coiling, buckling, and wrinkling), and depending on the spontaneous curvature and the prescribed periodicity along the cylinder axis we obtain different stabilities of the bifurcating branches, and different secondary bifurcations.

math.AP

Traveling vegetation-herbivore waves can sustain ecosystems threatened by droughts and population growth

Dryland vegetation can survive water stress by forming spatial patterns but is often subjected to herbivory as an additional stress that puts it at risk of desertification. Understanding the mutual relationships between vegetation patterning and herbivory is crucial for securing food production in drylands, which constitute the majority of rangelands worldwide. Here, we introduce a novel vegetation-herbivore model that captures pattern-forming feedbacks associated with water and herbivory stress and a behavioral aspect of herbivores representing an exploitation strategy.Applying numerical continuation methods, we analyze the bifurcation structure of uniform and patterned vegetation-herbivore solutions, and use direct numerical simulations to study various forms of collective herbivore dynamics. We find that herbivory stress can induce traveling vegetation-herbivore waves and uncover the ecological mechanism that drives their formation. In the traveling-wave state, the herbivore distribution is asymmetric with higher density on one side of each vegetation patch. At low precipitation values their distribution is localized, while at high precipitation the herbivores are spread over the entire landscape. Importantly, their asymmetric distribution results in uneven herbivory stress, strong on one side of each vegetation patch and weak on the opposing side - weaker than the stress exerted in spatially uniform herbivore distribution. Consequently, the formation of traveling waves results in increased sustainability to herbivory stress. We conclude that vegetation-herbivore traveling waves may play an essential role in sustaining herbivore populations under conditions of combined water and herbivory stress, thereby contributing to food security in endangered regions threatened by droughts and population growth.

q-bio.PE

Time-dependent localized patterns in a predator-prey model

Numerical continuation is used to compute solution branches in a two-component reaction-diffusion model of Leslie--Gower type. %in the vicinity of a Turing-Hopf interaction. Two regimes are studied in detail. In the first, the homogeneous state loses stability to supercritical spatially uniform oscillations, followed by a subcritical steady state bifurcation of Turing type. The latter leads to spatially localized states embedded in an oscillating background that bifurcate from snaking branches of localized steady states. Using two-parameter continuation we uncover a novel mechanism whereby disconnected segments of oscillatory states zip up into a continuous snaking branch of time-periodic localized states, some of which are stable. In the second, the homogeneous state loses stability to supercritical Turing patterns, but steady spatially localized states embedded either in the homogeneous state or in a small amplitude Turing state are nevertheless present. We show that such behavior is possible when sideband Turing states are strongly subcritical and explain why this is so in the present model. In both cases the observed behavior differs significantly from that expected on the basis of a supercritical primary bifurcation.

math.DS

Phase transitions and minimal interfaces on manifolds with conical singularities

Using $Γ$-convergence, we study the Cahn-Hilliard problem with interface width parameter $\varepsilon > 0$ for phase transitions on manifolds with conical singularities. We prove that minimizers of the corresponding energy functional exist and converge, as $\varepsilon \to 0$, to a function that takes only two values with an interface along a hypersurface that has minimal area among those satisfying a volume constraint. In a numerical example, we use continuation and bifurcation methods to study families of critical points at small $\varepsilon > 0$ on 2D elliptical cones, parameterized by height and ellipticity of the base. Some of these critical points are minimizers with interfaces crossing the cone tip. On the other hand, we prove that interfaces which are minimizers of the perimeter functional, corresponding to $\varepsilon = 0$, never pass through the cone tip for general cones with angle less than $2π$. Thus tip minimizers for finite $\varepsilon > 0$ must become saddles as $\varepsilon \to 0$, and we numerically identify the associated bifurcation, finding a delicate interplay of $\varepsilon > 0$ and the cone parameters in our example.

math.AP

Differential geometric bifurcation problems in pde2path -- algorithms and tutorial examples

We describe how some differential geometric bifurcation problems can be treated with the MATLAB continuation and bifurcation toolbox pde2path. The basic setup consists in solving the PDEs for the normal displacement of an immersed surface $X\subset\mathbb{R}^3$ and subsequent update of $X$ in each continuation step, combined with bifurcation detection and localization, followed by possible branch switching. Examples treated include some minimal surfaces such as Enneper's surface and a Schwarz-P-family, some non-zero constant mean curvature surfaces such as liquid bridges and nodoids, and some 4th order biomembrane models. In all of these we find interesting symmetry breaking bifurcations. Some of these are (semi)analytically known and thus are used as benchmarks.

math.DG

Origin of Jumping Oscillons in an Excitable Reaction-Diffusion System

Oscillons, i.e., immobile spatially localized but temporally oscillating structures, are the subject of intense study since their discovery in Faraday wave experiments. However, oscillons can also disappear and reappear at a shifted spatial location, becoming jumping oscillons (JOs). We explain here the origin of this behavior in a three-variable reaction-diffusion system via numerical continuation and bifurcation theory, and show that JOs are created via a modulational instability of excitable traveling pulses (TPs). We also reveal the presence of bound states of JOs and TPs and patches of such states (including jumping periodic patterns) and determine their stability. This rich multiplicity of spatiotemporal states lends itself to information and storage handling.

nlin.PS

Localized and extended patterns in the cubic-quintic Swift-Hohenberg equation on a disk

Axisymmetric and nonaxisymmetric patterns in the cubic-quintic Swift-Hohenberg equation posed on a disk with Neumann boundary conditions are studied via numerical continuation and bifurcation analysis. Axisymmetric localized solutions in the form of spots and rings known from earlier studies persist and snake in the usual fashion until they begin to interact with the boundary. Depending on parameters, including the disk radius, these states may or may not connect to the branch of domain-filling target states. Secondary instabilities of localized axisymmetric states may create multi-arm localized structures that grow and interact with the boundary before broadening into domain filling states. High azimuthal wavenumber wall states referred to as daisy states are also found. Secondary bifurcations from these states include localized daisies, i.e., wall states localized in both radius and angle. Depending on parameters, these states may snake much as in the one-dimensional Swift-Hohenberg equation, or invade the interior of the domain, yielding states referred to as worms, or domain-filling stripes.

nlin.PS

Bending and pinching of three-phase stripes: From secondary instabilities to morphological deformations in organic photovoltaics

Optimizing the properties of the mosaic morphology of bulk heterojunction (BHJ) organic photovoltaics (OPV) is not only challenging technologically but also intriguing from the mechanistic point of view. Among the recent breakthroughs is the identification and utilization of a three-phase (donor/mixed/acceptor) BHJ, where the (intermediate) mixed-phase can inhibit morphological changes, such as phase separation. Using a mean-field approach, we reveal and distinguish, between generic mechanisms that alter through transverse instabilities the evolution of stripes: the bending (zigzag mode) and the pinching (cross-roll mode) of the donor/acceptor domains. The results are summarized in a parameter plane spanned by the mixing energy and illumination, and show that donor-acceptor mixtures with higher mixing energy are more likely to develop pinching under charge-flux boundary conditions. The latter is notorious as it leads to the formation of disconnected domains and hence to loss of charge flux. We believe that these results provide a qualitative road-map for BHJ optimization, using mixed-phase composition and therefore, an essential step toward long-lasting OPV. More broadly, the results are also of relevance to study the coexistence of multiple-phase domains in material science, such as in ion-intercalated rechargeable batteries.

nlin.PS

User guide on Hopf bifurcation and time periodic orbits with pde2path

We explain the setup for using the pde2path libraries for Hopf bifurcation and continuation of branches of periodic orbits and give implementation details of the associated demo directories. See [Uecker, Comm. in Comp. Phys., 2019] for a description of the basic algorithms and the mathematical background of the examples. Additionally we explain the treatment of Hopf bifurcations in systems with continuous symmetries, including the continuation of traveling waves and rotating waves in O(2) equivariant systems as relative equilibria, the continuation of Hopf bifurcation points via extended systems, and some simple setups for the bifurcation from periodic orbits associated to critical Floquet multipliers going through +-1.

math.NA

Pattern formation with pde2path -- a tutorial

We explain some pde2path setups for pattern formation in 1D, 2D and 3D. A focus is on new pde2path functions for branch switching at steady bifurcation points of higher multiplicity, typically due to discrete symmetries, but we also review general concepts of pattern formation and their handling in pde2path, including localized patterns and homoclinic snaking, again in 1D, 2D and 3D, based on the demo sh (Swift-Hohenberg equation). Next, the demos schnakpat (a Schnakenberg reaction-diffusion system) and chemtax (a quasilinear RD system with cross-diffusion from chemotaxis) simplify and unify previous results in a simple and concise way, CH (Cahn-Hilliard) deals with mass constraints, hexex deals with (multiple) branch points of higher degeneracy in a scalar problem on a hexagonal domain, and shgc illustrates some global coupling. The demos acS, actor, schnakS and schnaktor (the Allen-Cahn and Schnakenberg models on spheres and tori) consider pattern formation on curved surfaces, cpol considers a problem of cell polarization described by bulk-surface coupling, and bruosc (Brusselator) explains how to augment autonomous systems by a time periodic forcing. Along the way we also comment on the choice of meshes and mesh adaptation, on time integration, and we give some examples of branch point continuation and Hopf point continuation to approximate stability boundaries.

nlin.PS

Stripes on finite domains: Why the zigzag instability is only a partial story

Stationary periodic patterns are widespread in natural sciences, ranging from nano-scale electrochemical and amphiphilic systems to mesoscale fluid, chemical and biological media and to macro-scale vegetation and cloud patterns. Their formation is usually due to a primary symmetry breaking of a uniform state to stripes, often followed by secondary instabilities to form zigzag and labyrinthine patterns. These secondary instabilities are well studied under idealized conditions of an infinite domain, however, on finite domains, the situation is more subtle since the unstable modes depend also on boundary conditions. Using two prototypical models, the Swift-Hohenberg equation and the forced complex Ginzburg-Landau equation, we consider bounded domains with no flux boundary conditions transversal to the stripes, and reveal a distinct mixed-mode instability that lies in between the classical zigzag and the Eckhaus lines. This explains the stability of stripes in the mildly zigzag unstable regime, and, after crossing the mixed-mode line, the evolution of zigzag stripes in the bulk of the domain and the formation of defects near the boundaries. The results are of particular importance for problems with large time scale separation, such as bulk-heterojunction deformations in organic photovoltaic and vegetation in semi-arid regions, where early temporal transients may play an important role.

nlin.PS

Snaking branches of planar BCC fronts in the 3D Brusselator

We present results of the application of the numerical continuation and bifurcation package pde2path to the 3D Brusselator model, focusing on snaking branches of planar fronts between body centered cubes (BCCs) and the spatial homogeneous solution, and on planar fronts between BCCs and tubes (also called square prisms). These solutions also yield approximations of localized BCCs, and of BCCs embedded in a background of tubes (or vice versa). Additionally, we compute some moving fronts between lamellas and tubes. To give some theoretical background, and to aid the numerics for the full system, we use the Maxwell points for the cubic amplitude system over the BCC lattice.

nlin.PS