arXiv subjects

Hans C. Fogedby

Publications and source records attributed to Hans C. Fogedby.

At least 37 records · Page 2Linked to original sources

arXiv2006

DNA bubble dynamics as a quantum Coulomb problem

We study the dynamics of denaturation bubbles in double-stranded DNA on the basis of the Poland-Scheraga model. We demonstrate that the associated Fokker-Planck equation is equivalent to a Coulomb problem. Below the melting temperature the bubble lifetime is associated with the continuum of scattering states of the repulsive Coulomb potential, at the melting temperature the Coulomb potential vanishes and the underlying first exit dynamics exhibits a long time power law tail, above the melting temperature, corresponding to an attractive Coulomb potential, the long time dynamics is controlled by the lowest bound state. Correlations and finite size effects are discussed.

cond-mat.stat-mech↗

arXiv2005

The Kardar-Parisi-Zhang equation in the weak noise limit: Pattern formation and upper critical dimension

We extend the previously developed weak noise scheme, applied to the noisy Burgers equation in 1D, to the Kardar-Parisi-Zhang equation for a growing interface in arbitrary dimensions. By means of the Cole-Hopf transformation we show that the growth morphology can be interpreted in terms of dynamically evolving textures of localized growth modes with superimposed diffusive modes. In the Cole-Hopf representation the growth modes are static solutions to the diffusion equation and the nonlinear Schroedinger equation, subsequently boosted to finite velocity by a Galilei transformation. We discuss the dynamics of the pattern formation and, briefly, the superimposed linear modes. Implementing the stochastic interpretation we discuss kinetic transitions and in particular the properties in the pair mode or dipole sector. We find the Hurst exponent H=(3-d)/(4-d) for the random walk of growth modes in the dipole sector. Finally, applying Derrick's theorem based on constrained minimization we show that the upper critical dimension is d=4 in the sense that growth modes cease to exist above this dimension.

cond-mat.stat-mech↗

arXiv2004

Weak noise approach to the logistic map

Using a nonperturbative weak noise approach we investigate the interference of noise and chaos in simple 1D maps. We replace the noise-driven 1D map by an area-preserving 2D map modelling the Poincare sections of a conserved dynamical system with unbounded energy manifolds. We analyze the properties of the 2D map and draw conclusions concerning the interference of noise on the nonlinear time evolution. We apply this technique to the standard period-doubling sequence in the logistic map. From the 2D area-preserving analogue we, in addition to the usual period-doubling sequence, obtain a series of period doubled cycles which are elliptic in nature. These cycles are spinning off the real axis at parameters values corresponding to the standard period doubling events.

nlin.CD↗

arXiv2004

Localized growth modes, dynamic textures, and upper critical dimension for the Kardar-Parisi-Zhang equation in the weak noise limit

A nonperturbative weak noise scheme is applied to the Kardar-Parisi-Zhang equation for a growing interface in all dimensions. It is shown that the growth morphology can be interpreted in terms of a dynamically evolving texture of localized growth modes with superimposed diffusive modes. Applying Derrick's theorem it is conjectured that the upper critical dimension is four.

cond-mat.stat-mech↗

arXiv2004

Domain wall propagation and nucleation in a metastable two-level system

We present a dynamical description and analysis of non-equilibrium transitions in the noisy one-dimensional Ginzburg-Landau equation for an extensive system based on a weak noise canonical phase space formulation of the Freidlin-Wentzel or Martin-Siggia-Rose methods. We derive propagating nonlinear domain wall or soliton solutions of the resulting canonical field equations with superimposed diffusive modes. The transition pathways are characterized by the nucleations and subsequent propagation of domain walls. We discuss the general switching scenario in terms of a dilute gas of propagating domain walls and evaluate the Arrhenius factor in terms of the associated action. We find excellent agreement with recent numerical optimization studies.

cond-mat.stat-mech↗

arXiv2003

Exact solution of a linear molecular motor model driven by two-step fluctuations and subject to protein friction

We investigate by analytical means the stochastic equations of motion of a linear molecular motor model based on the concept of protein friction. Solving the coupled Langevin equations originally proposed by Mogilner et al. (A. Mogilner et al., Phys. Lett. {\bf 237}, 297 (1998)), and averaging over both the two-step internal conformational fluctuations and the thermal noise, we present explicit, analytical expressions for the average motion and the velocity-force relationship. Our results allow for a direct interpretation of details of this motor model which are not readily accessible from numerical solutions. In particular, we find that the model is able to predict physiologically reasonable values for the load-free motor velocity and the motor mobility.

cond-mat.stat-mech↗

arXiv2003

Damped finite-time-singularity driven by noise

We consider the combined influence of linear damping and noise on a dynamical finite-time-singularity model for a single degree of freedom. We find that the noise effectively resolves the finite-time-singularity and replaces it by a first-passage-time or absorbing state distribution with a peak at the singularity and a long time tail. The damping introduces a characteristic cross-over time. In the early time regime the probability distribution and first-passage-time distribution show a power law behavior with scaling exponent depending on the ratio of the non linear coupling strength to the noise strength. In the late time regime the behavior is controlled by the damping. The study might be of relevance in the context of hydrodynamics on a nanometer scale, in material physics, and in biophysics.

cond-mat.stat-mech↗

arXiv2003

Correlations, soliton modes, and non-Hermitian linear mode transmutation in the 1D noisy Burgers equation

Using the previously developed canonical phase space approach applied to the noisy Burgers equation in one dimension, we discuss in detail the growth morphology in terms of nonlinear soliton modes and superimposed linear modes. We moreover analyze the non-Hermitian character of the linear mode spectrum and the associated dynamical pinning and mode transmutation from diffusive to propagating behavior induced by the solitons. We discuss the anomalous diffusion of growth modes, switching and pathways, correlations in the multi-soliton sector, and in detail the correlations and scaling properties in the two-soliton sector.

cond-mat.stat-mech↗

arXiv2002

Soliton-dynamical approach to a noisy Ginzburg-Landau model

We present a dynamical description and analysis of non-equilibrium transitions in the noisy Ginzburg-Landau equation based on a canonical phase space formulation. The transition pathways are characterized by nucleation and subsequent propagation of domain walls or solitons. We also evaluate the Arrhenius factor in terms of an associated action and find good agreement with recent numerical optimization studies.

cond-mat.stat-mech↗

arXiv2002

Power laws and stretched exponentials in a noisy finite-time-singularity model

We discuss the influence of white noise on a generic dynamical finite-time-singularity model for a single degree of freedom. We find that the noise effectively resolves the finite-time-singularity and replaces it by a first-passage-time or absorbing state distribution with a peak at the singularity and a long time tail exhibiting power law or stretched exponential behavior. The study might be of relevance in the context of hydrodynamics on a nanometer scale, in material physics, and in biophysics.

cond-mat.stat-mech↗

arXiv2002

Towards a strong coupling theory for the KPZ equation

After a brief introduction we review the nonperturbative weak noise approach to the KPZ equation in one dimension. We argue that the strong coupling aspects of the KPZ equation are related to the existence of localized propagating domain walls or solitons representing the growth modes; the statistical weight of the excitations is governed by a dynamical action representing the generalization of the Boltzmann factor to kinetics. This picture is not limited to one dimension. We thus attempt a generalization to higher dimensions where the strong coupling aspects presumably are associated with a cellular network of domain walls. Based on this picture we present arguments for the Wolf-Kertez expression z= (2d+1)/(d+1) for the dynamical exponent.

cond-mat.stat-mech↗

arXiv2001

Ballistic Motion in Quenched Random Environments

We study the motion of a massive particle in a quenched random environment at zero temperature. The distribution of particle positions is investigated numerically and special focus is placed on the mean stopping distance and its fluctuations. We apply a scaling analysis in order to obtain analytical information about the distribution function. The model serves as a simple example of transport in a random medium.

cond-mat.stat-mech↗

arXiv2001

Scaling function for the noisy Burgers equation in the soliton approximation

We derive the scaling function for the one dimensional noisy Burgers equation in the two-soliton approximation within the weak noise canonical phase space approach. The result is in agreement with an earlier heuristic expression and exhibits the correct scaling properties. The calculation presents the first step in a many body treatment of the correlations in the Burgers equation.

cond-mat.stat-mech↗

arXiv2001

Solitons in the noisy Burgers equation

We investigate numerically the coupled diffusion-advective type field equations originating from the canonical phase space approach to the noisy Burgers equation or the equivalent Kardar-Parisi-Zhang equation in one spatial dimension. The equations support stable right hand and left hand solitons and in the low viscosity limit a long-lived soliton pair excitation. We find that two identical pair excitations scatter transparently subject to a size dependent phase shift and that identical solitons scatter on a static soliton transparently without a phase shift. The soliton pair excitation and the scattering configurations are interpreted in terms of growing step and nucleation events in the interface growth profile. In the asymmetrical case the soliton scattering modes are unstable presumably toward multi soliton production and extended diffusive modes, signalling the general non-integrability of the coupled field equations. Finally, we have shown that growing steps perform anomalous random walk with dynamic exponent z=3/2 and that the nucleation of a tip is stochastically suppressed with respect to plateau formation.

cond-mat.stat-mech↗

arXiv2000

Dynamical pinning and non-Hermitian mode transmutation in the Burgers equation

We discuss the mode spectrum in both the deterministic and noisy Burgers equations in one dimension. Similar to recent investigations of vortex depinning in superconductors, the spectrum is given by a non-Hermitian eigenvalue problem which is related to a `quantum' problem by a complex gauge transformation. The soliton profile in the Burgers equation serves as a complex gauge field engendering a {\em mode transmutation} of diffusive modes into propagating modes and giving rise to a {\em dynamical pinning} of localized modes about the solitons.

cond-mat.stat-mech↗

arXiv1999

Canonical phase space approach to the noisy Burgers equation: Probability distributions

We present a canonical phase space approach to stochastic systems described by Langevin equations driven by white noise. Mapping the associated Fokker-Planck equation to a Hamilton-Jacobi equation in the nonperturbative weak noise limit we invoke a {\em principle of least action} for the determination of the probability distributions. We apply the scheme to the noisy Burgers and KPZ equations and discuss the time-dependent and stationary probability distributions. In one dimension we derive the long-time skew distribution approaching the symmetric stationary Gaussian distribution. In the short-time region we discuss heuristically the nonlinear soliton contributions and derive an expression for the distribution in accordance with the directed polymer-replica and asymmetric exclusion model results. We also comment on the distribution in higher dimensions.

cond-mat.stat-mech↗

arXiv1998

Canonical phase space approach to the noisy Burgers equation

Presenting a general phase approach to stochastic processes we analyze in particular the Fokker-Planck equation for the noisy Burgers equation and discuss the time dependent and stationary probability distributions. In one dimension we derive the long-time skew distribution approaching the symmetric stationary Gaussian distribution. In the short time regime we discuss heuristically the nonlinear soliton contributions and derive an expression for the distribution in accordance with the directed polymer-replica model and asymmetric exclusion model results.

cond-mat.stat-mech↗

arXiv1998

Levy Flights in External Force Fields: Langevin and Fractional Fokker-Planck Equations, and their Solutions

We consider Levy flights subject to external force fields. This anomalous transport process is described by two approaches, a Langevin equation with Levy noise and the corresponding generalized Fokker-Planck equation containing a fractional derivative in space. The cases of free flights, constant force and linear Hookean force are analyzed in detail, and we corroborate our findings with results from numerical simulations. We discuss the non-Gibbsian character of the stationary solution for the case of the Hookean force, i.e. the deviation from Boltzmann equilibrium for long times. The possible connection to Tsallis's q-statistics is studied.

cond-mat.stat-mech↗