arXiv subjects

Hao Chen

Publications and source records attributed to Hao Chen.

At least 613 records · Page 34Linked to original sources

arXiv2025

QMix: Quality-aware Learning with Mixed Noise for Robust Retinal Disease Diagnosis

Due to the complexity of medical image acquisition and the difficulty of annotation, medical image datasets inevitably contain noise. Noisy data with wrong labels affects the robustness and generalization ability of deep neural networks. Previous noise learning methods mainly considered noise arising from images being mislabeled, i.e. label noise, assuming that all mislabeled images are of high image quality. However, medical images are prone to suffering extreme quality issues, i.e. data noise, where discriminative visual features are missing for disease diagnosis. In this paper, we propose a noise learning framework, termed as QMix, that learns a robust disease diagnosis model under mixed noise. QMix alternates between sample separation and quality-aware semisupervised training in each training epoch. In the sample separation phase, we design a joint uncertainty-loss criterion to effectively separate (1) correctly labeled images; (2) mislabeled images with high quality and (3) mislabeled images with low quality. In the semi-supervised training phase, we train a disease diagnosis model to learn robust feature representation from the separated samples. Specifically, we devise a sample-reweighing loss to mitigate the effect of mislabeled images with low quality during training. Meanwhile, a contrastive enhancement loss is proposed to further distinguish mislabeled images with low quality from correctly labeled images. QMix achieved state-of-the-art disease diagnosis performance on five public retinal image datasets and exhibited substantial improvement on robustness against mixed noise.

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arXiv2025

Transferable Deployment of Semantic Edge Inference Systems via Unsupervised Domain Adaption

This paper investigates deploying semantic edge inference systems for performing a common image clarification task. In particular, each system consists of multiple Internet of Things (IoT) devices that first locally encode the sensing data into semantic features and then transmit them to an edge server for subsequent data fusion and task inference. The inference accuracy is determined by efficient training of the feature encoder/decoder using labeled data samples. Due to the difference in sensing data and communication channel distributions, deploying the system in a new environment may induce high costs in annotating data labels and re-training the encoder/decoder models. To achieve cost-effective transferable system deployment, we propose an efficient Domain Adaptation method for Semantic Edge INference systems (DASEIN) that can maintain high inference accuracy in a new environment without the need for labeled samples. Specifically, DASEIN exploits the task-relevant data correlation between different deployment scenarios by leveraging the techniques of unsupervised domain adaptation and knowledge distillation. It devises an efficient two-step adaptation procedure that sequentially aligns the data distributions and adapts to the channel variations. Numerical results show that, under a substantial change in sensing data distributions, the proposed DASEIN outperforms the best-performing benchmark method by 7.09% and 21.33% in inference accuracy when the new environment has similar or 25 dB lower channel signal to noise power ratios (SNRs), respectively. This verifies the effectiveness of the proposed method in adapting both data and channel distributions in practical transfer deployment applications.

cs.LG↗

arXiv2025

ContourFormer: Real-Time Contour-Based End-to-End Instance Segmentation Transformer

This paper presents Contourformer, a real-time contour-based instance segmentation algorithm. The method is fully based on the DETR paradigm and achieves end-to-end inference through iterative and progressive mechanisms to optimize contours. To improve efficiency and accuracy, we develop two novel techniques: sub-contour decoupling mechanisms and contour fine-grained distribution refinement. In the sub-contour decoupling mechanism, we propose a deformable attention-based module that adaptively selects sampling regions based on the current predicted contour, enabling more effective capturing of object boundary information. Additionally, we design a multi-stage optimization process to enhance segmentation precision by progressively refining sub-contours. The contour fine-grained distribution refinement technique aims to further improve the ability to express fine details of contours. These innovations enable Contourformer to achieve stable and precise segmentation for each instance while maintaining real-time performance. Extensive experiments demonstrate the superior performance of Contourformer on multiple benchmark datasets, including SBD, COCO, and KINS. We conduct comprehensive evaluations and comparisons with existing state-of-the-art methods, showing significant improvements in both accuracy and inference speed. This work provides a new solution for contour-based instance segmentation tasks and lays a foundation for future research, with the potential to become a strong baseline method in this field.

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arXiv2025

Towards A Generalizable Pathology Foundation Model via Unified Knowledge Distillation

Foundation models pretrained on large-scale datasets are revolutionizing the field of computational pathology (CPath). The generalization ability of foundation models is crucial for the success in various downstream clinical tasks. However, current foundation models have only been evaluated on a limited type and number of tasks, leaving their generalization ability and overall performance unclear. To address this gap, we established a most comprehensive benchmark to evaluate the performance of off-the-shelf foundation models across six distinct clinical task types, encompassing a total of 72 specific tasks, including slide-level classification, survival prediction, ROI-tissue classification, ROI retrieval, visual question answering, and report generation. Our findings reveal that existing foundation models excel at certain task types but struggle to effectively handle the full breadth of clinical tasks. To improve the generalization of pathology foundation models, we propose a unified knowledge distillation framework consisting of both expert and self-knowledge distillation, where the former allows the model to learn from the knowledge of multiple expert models, while the latter leverages self-distillation to enable image representation learning via local-global alignment. Based on this framework, we curated a dataset of 96,000 whole slide images (WSIs) and developed a Generalizable Pathology Foundation Model (GPFM). This advanced model was trained on a substantial dataset comprising 190 million images extracted from approximately 72,000 publicly available slides, encompassing 34 major tissue types. Evaluated on the established benchmark, GPFM achieves an impressive average rank of 1.6, with 42 tasks ranked 1st, while the second-best model, UNI, attains an average rank of 3.7, with only 6 tasks ranked 1st.

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arXiv2025

Zero-Shot Denoising for Fluorescence Lifetime Imaging Microscopy with Intensity-Guided Learning

Multimodal and multi-information microscopy techniques such as Fluorescence Lifetime Imaging Microscopy (FLIM) extend the informational channels beyond intensity-based fluorescence microscopy but suffer from reduced image quality due to complex noise patterns. For FLIM, the intrinsic relationship between intensity and lifetime information means noise in each channel is a multivariate function across channels without necessarily sharing structural features. Based on this, we present a novel Zero-Shot Denoising Framework with an Intensity-Guided Learning approach. Our correlation-preserving strategy maintains important biological information that might be lost when channels are processed independently. Our framework implements separate processing paths for each channel and utilizes a pre-trained intensity denoising prior to guide the refinement of lifetime components across multiple channels. Through experiments on real-world FLIM-acquired biological samples, we show that our approach outperforms existing methods in both noise reduction and lifetime preservation, thereby enabling more reliable extraction of physiological and molecular information.

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arXiv2025

Open-CD: A Comprehensive Toolbox for Change Detection

We present Open-CD, a change detection toolbox that contains a rich set of change detection methods as well as related components and modules. The toolbox started from a series of open source general vision task tools, including OpenMMLab Toolkits, PyTorch Image Models, etc. It gradually evolves into a unified platform that covers many popular change detection methods and contemporary modules. It not only includes training and inference codes, but also provides some useful scripts for data analysis. We believe this toolbox is by far the most complete change detection toolbox. In this report, we introduce the various features, supported methods and applications of Open-CD. In addition, we also conduct a benchmarking study on different methods and components. We wish that the toolbox and benchmark could serve the growing research community by providing a flexible toolkit to reimplement existing methods and develop their own new change detectors. Code and models are available at https://github.com/likyoo/open-cd. Pioneeringly, this report also includes brief descriptions of the algorithms supported in Open-CD, mainly contributed by their authors. We sincerely encourage researchers in this field to participate in this project and work together to create a more open community. This toolkit and report will be kept updated.

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arXiv2025

Anti-Forgetting Adaptation for Unsupervised Person Re-identification

Regular unsupervised domain adaptive person re-identification (ReID) focuses on adapting a model from a source domain to a fixed target domain. However, an adapted ReID model can hardly retain previously-acquired knowledge and generalize to unseen data. In this paper, we propose a Dual-level Joint Adaptation and Anti-forgetting (DJAA) framework, which incrementally adapts a model to new domains without forgetting source domain and each adapted target domain. We explore the possibility of using prototype and instance-level consistency to mitigate the forgetting during the adaptation. Specifically, we store a small number of representative image samples and corresponding cluster prototypes in a memory buffer, which is updated at each adaptation step. With the buffered images and prototypes, we regularize the image-to-image similarity and image-to-prototype similarity to rehearse old knowledge. After the multi-step adaptation, the model is tested on all seen domains and several unseen domains to validate the generalization ability of our method. Extensive experiments demonstrate that our proposed method significantly improves the anti-forgetting, generalization and backward-compatible ability of an unsupervised person ReID model.

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arXiv2025

Multi-modal Reference Learning for Fine-grained Text-to-Image Retrieval

Fine-grained text-to-image retrieval aims to retrieve a fine-grained target image with a given text query. Existing methods typically assume that each training image is accurately depicted by its textual descriptions. However, textual descriptions can be ambiguous and fail to depict discriminative visual details in images, leading to inaccurate representation learning. To alleviate the effects of text ambiguity, we propose a Multi-Modal Reference learning framework to learn robust representations. We first propose a multi-modal reference construction module to aggregate all visual and textual details of the same object into a comprehensive multi-modal reference. The multi-modal reference hence facilitates the subsequent representation learning and retrieval similarity computation. Specifically, a reference-guided representation learning module is proposed to use multi-modal references to learn more accurate visual and textual representations. Additionally, we introduce a reference-based refinement method that employs the object references to compute a reference-based similarity that refines the initial retrieval results. Extensive experiments are conducted on five fine-grained text-to-image retrieval datasets for different text-to-image retrieval tasks. The proposed method has achieved superior performance over state-of-the-art methods. For instance, on the text-to-person image retrieval dataset RSTPReid, our method achieves the Rank1 accuracy of 56.2\%, surpassing the recent CFine by 5.6\%.

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arXiv2025

A Large Model for Non-invasive and Personalized Management of Breast Cancer from Multiparametric MRI

Breast Magnetic Resonance Imaging (MRI) demonstrates the highest sensitivity for breast cancer detection among imaging modalities and is standard practice for high-risk women. Interpreting the multi-sequence MRI is time-consuming and prone to subjective variation. We develop a large mixture-of-modality-experts model (MOME) that integrates multiparametric MRI information within a unified structure, leveraging breast MRI scans from 5,205 female patients in China for model development and validation. MOME matches four senior radiologists' performance in identifying breast cancer and outperforms a junior radiologist. The model is able to reduce unnecessary biopsies in Breast Imaging-Reporting and Data System (BI-RADS) 4 patients, classify triple-negative breast cancer, and predict pathological complete response to neoadjuvant chemotherapy. MOME further supports inference with missing modalities and provides decision explanations by highlighting lesions and measuring modality contributions. To summarize, MOME exemplifies an accurate and robust multimodal model for noninvasive, personalized management of breast cancer patients via multiparametric MRI. Code is available at https://github.com/LLYXC/MOME/tree/main.

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arXiv2025

HMIL: Hierarchical Multi-Instance Learning for Fine-Grained Whole Slide Image Classification

Fine-grained classification of whole slide images (WSIs) is essential in precision oncology, enabling precise cancer diagnosis and personalized treatment strategies. The core of this task involves distinguishing subtle morphological variations within the same broad category of gigapixel-resolution images, which presents a significant challenge. While the multi-instance learning (MIL) paradigm alleviates the computational burden of WSIs, existing MIL methods often overlook hierarchical label correlations, treating fine-grained classification as a flat multi-class classification task. To overcome these limitations, we introduce a novel hierarchical multi-instance learning (HMIL) framework. By facilitating on the hierarchical alignment of inherent relationships between different hierarchy of labels at instance and bag level, our approach provides a more structured and informative learning process. Specifically, HMIL incorporates a class-wise attention mechanism that aligns hierarchical information at both the instance and bag levels. Furthermore, we introduce supervised contrastive learning to enhance the discriminative capability for fine-grained classification and a curriculum-based dynamic weighting module to adaptively balance the hierarchical feature during training. Extensive experiments on our large-scale cytology cervical cancer (CCC) dataset and two public histology datasets, BRACS and PANDA, demonstrate the state-of-the-art class-wise and overall performance of our HMIL framework. Our source code is available at https://github.com/ChengJin-git/HMIL.

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arXiv2025

OSV: One Step is Enough for High-Quality Image to Video Generation

Video diffusion models have shown great potential in generating high-quality videos, making them an increasingly popular focus. However, their inherent iterative nature leads to substantial computational and time costs. While efforts have been made to accelerate video diffusion by reducing inference steps (through techniques like consistency distillation) and GAN training (these approaches often fall short in either performance or training stability). In this work, we introduce a two-stage training framework that effectively combines consistency distillation with GAN training to address these challenges. Additionally, we propose a novel video discriminator design, which eliminates the need for decoding the video latents and improves the final performance. Our model is capable of producing high-quality videos in merely one-step, with the flexibility to perform multi-step refinement for further performance enhancement. Our quantitative evaluation on the OpenWebVid-1M benchmark shows that our model significantly outperforms existing methods. Notably, our 1-step performance(FVD 171.15) exceeds the 8-step performance of the consistency distillation based method, AnimateLCM (FVD 184.79), and approaches the 25-step performance of advanced Stable Video Diffusion (FVD 156.94).

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arXiv2025

Monocular and Generalizable Gaussian Talking Head Animation

In this work, we introduce Monocular and Generalizable Gaussian Talking Head Animation (MGGTalk), which requires monocular datasets and generalizes to unseen identities without personalized re-training. Compared with previous 3D Gaussian Splatting (3DGS) methods that requires elusive multi-view datasets or tedious personalized learning/inference, MGGtalk enables more practical and broader applications. However, in the absence of multi-view and personalized training data, the incompleteness of geometric and appearance information poses a significant challenge. To address these challenges, MGGTalk explores depth information to enhance geometric and facial symmetry characteristics to supplement both geometric and appearance features. Initially, based on the pixel-wise geometric information obtained from depth estimation, we incorporate symmetry operations and point cloud filtering techniques to ensure a complete and precise position parameter for 3DGS. Subsequently, we adopt a two-stage strategy with symmetric priors for predicting the remaining 3DGS parameters. We begin by predicting Gaussian parameters for the visible facial regions of the source image. These parameters are subsequently utilized to improve the prediction of Gaussian parameters for the non-visible regions. Extensive experiments demonstrate that MGGTalk surpasses previous state-of-the-art methods, achieving superior performance across various metrics.

cs.CV↗

arXiv2025

PathOrchestra: A Comprehensive Foundation Model for Computational Pathology with Over 100 Diverse Clinical-Grade Tasks

The complexity and variability inherent in high-resolution pathological images present significant challenges in computational pathology. While pathology foundation models leveraging AI have catalyzed transformative advancements, their development demands large-scale datasets, considerable storage capacity, and substantial computational resources. Furthermore, ensuring their clinical applicability and generalizability requires rigorous validation across a broad spectrum of clinical tasks. Here, we present PathOrchestra, a versatile pathology foundation model trained via self-supervised learning on a dataset comprising 300K pathological slides from 20 tissue and organ types across multiple centers. The model was rigorously evaluated on 112 clinical tasks using a combination of 61 private and 51 public datasets. These tasks encompass digital slide preprocessing, pan-cancer classification, lesion identification, multi-cancer subtype classification, biomarker assessment, gene expression prediction, and the generation of structured reports. PathOrchestra demonstrated exceptional performance across 27,755 WSIs and 9,415,729 ROIs, achieving over 0.950 accuracy in 47 tasks, including pan-cancer classification across various organs, lymphoma subtype diagnosis, and bladder cancer screening. Notably, it is the first model to generate structured reports for high-incidence colorectal cancer and diagnostically complex lymphoma-areas that are infrequently addressed by foundational models but hold immense clinical potential. Overall, PathOrchestra exemplifies the feasibility and efficacy of a large-scale, self-supervised pathology foundation model, validated across a broad range of clinical-grade tasks. Its high accuracy and reduced reliance on extensive data annotation underline its potential for clinical integration, offering a pathway toward more efficient and high-quality medical services.

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arXiv2025

UltraRAG: A Modular and Automated Toolkit for Adaptive Retrieval-Augmented Generation

Retrieval-Augmented Generation (RAG) significantly enhances the performance of large language models (LLMs) in downstream tasks by integrating external knowledge. To facilitate researchers in deploying RAG systems, various RAG toolkits have been introduced. However, many existing RAG toolkits lack support for knowledge adaptation tailored to specific application scenarios. To address this limitation, we propose UltraRAG, a RAG toolkit that automates knowledge adaptation throughout the entire workflow, from data construction and training to evaluation, while ensuring ease of use. UltraRAG features a user-friendly WebUI that streamlines the RAG process, allowing users to build and optimize systems without coding expertise. It supports multimodal input and provides comprehensive tools for managing the knowledge base. With its highly modular architecture, UltraRAG delivers an end-to-end development solution, enabling seamless knowledge adaptation across diverse user scenarios. The code, demonstration videos, and installable package for UltraRAG are publicly available at https://github.com/OpenBMB/UltraRAG.

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arXiv2025

Physics-Informed Adaptive Deep Koopman Operator Modeling for Autonomous Vehicle Dynamics

Koopman operator has been recognized as an ongoing data-driven modeling method for vehicle dynamics which lifts the original state space into a high-dimensional linear state space. The deep neural networks (DNNs) are verified to be useful for the approximation of Koopman operator. To further improve the accuracy of Koopman operator approximation, this paper introduces a physical loss function term from the concept of physics-informed neural networks (PINNs), i.e., the acceleration loss between neural network output and sensor measurements, to improve the efficiency of network learning and its interpretability. Moreover, we utilize the sliding window least squares (SWLS) to update the system matrix and input matrix online in the lifted space, therefore enabling the deep Koopman operator to adapt to the rapid dynamics of autonomous vehicles in real events. The data collection and validation are conducted on CarSim/Simlink co-simulation platform. With comparison to other physics-based and data-driven approaches on various scenarios, the results reveal that the acceleration loss-informed network refines the accuracy of Koopman operator approximation and renders it with inherent generalization, and the SWLS enforces the deep Koopman operator's capability to cope with changes in vehicle parameters, road conditions, and rapid maneuvers. This indicates the proposed physics-informed adaptive deep Koopman operator is a performant and efficient data-driven modeling tool.

eess.SY↗

arXiv2025

A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model

Remarkable strides in computational pathology have been made in the task-agnostic foundation model that advances the performance of a wide array of downstream clinical tasks. Despite the promising performance, there are still several challenges. First, prior works have resorted to either vision-only or image-caption data, disregarding pathology reports with more clinically authentic information from pathologists and gene expression profiles which respectively offer distinct knowledge for versatile clinical applications. Second, the current progress in pathology FMs predominantly concentrates on the patch level, where the restricted context of patch-level pretraining fails to capture whole-slide patterns. Even recent slide-level FMs still struggle to provide whole-slide context for patch representation. In this study, for the first time, we develop a pathology foundation model incorporating three levels of modalities: pathology slides, pathology reports, and gene expression data, which resulted in 26,169 slide-level modality pairs from 10,275 patients across 32 cancer types, amounting to over 116 million pathological patch images. To leverage these data for CPath, we propose a novel whole-slide pretraining paradigm that injects the multimodal whole-slide context into the patch representation, called Multimodal Self-TAught PRetraining (mSTAR). The proposed paradigm revolutionizes the pretraining workflow for CPath, enabling the pathology FM to acquire the whole-slide context. To the best of our knowledge, this is the first attempt to incorporate three modalities at the whole-slide context for enhancing pathology FMs. To systematically evaluate the capabilities of mSTAR, we built the largest spectrum of oncological benchmark, spanning 7 categories of oncological applications in 15 types of 97 practical oncological tasks.

cs.CV↗

arXiv2025

Distilled Prompt Learning for Incomplete Multimodal Survival Prediction

The integration of multimodal data including pathology images and gene profiles is widely applied in precise survival prediction. Despite recent advances in multimodal survival models, collecting complete modalities for multimodal fusion still poses a significant challenge, hindering their application in clinical settings. Current approaches tackling incomplete modalities often fall short, as they typically compensate for only a limited part of the knowledge of missing modalities. To address this issue, we propose a Distilled Prompt Learning framework (DisPro) to utilize the strong robustness of Large Language Models (LLMs) to missing modalities, which employs two-stage prompting for compensation of comprehensive information for missing modalities. In the first stage, Unimodal Prompting (UniPro) distills the knowledge distribution of each modality, preparing for supplementing modality-specific knowledge of the missing modality in the subsequent stage. In the second stage, Multimodal Prompting (MultiPro) leverages available modalities as prompts for LLMs to infer the missing modality, which provides modality-common information. Simultaneously, the unimodal knowledge acquired in the first stage is injected into multimodal inference to compensate for the modality-specific knowledge of the missing modality. Extensive experiments covering various missing scenarios demonstrated the superiority of the proposed method. The code is available at https://github.com/Innse/DisPro.

cs.LG↗

arXiv2025

Casual Inference via Style Bias Deconfounding for Domain Generalization

Deep neural networks (DNNs) often struggle with out-of-distribution data, limiting their reliability in diverse realworld applications. To address this issue, domain generalization methods have been developed to learn domain-invariant features from single or multiple training domains, enabling generalization to unseen testing domains. However, existing approaches usually overlook the impact of style frequency within the training set. This oversight predisposes models to capture spurious visual correlations caused by style confounding factors, rather than learning truly causal representations, thereby undermining inference reliability. In this work, we introduce Style Deconfounding Causal Learning (SDCL), a novel causal inference-based framework designed to explicitly address style as a confounding factor. Our approaches begins with constructing a structural causal model (SCM) tailored to the domain generalization problem and applies a backdoor adjustment strategy to account for style influence. Building on this foundation, we design a style-guided expert module (SGEM) to adaptively clusters style distributions during training, capturing the global confounding style. Additionally, a back-door causal learning module (BDCL) performs causal interventions during feature extraction, ensuring fair integration of global confounding styles into sample predictions, effectively reducing style bias. The SDCL framework is highly versatile and can be seamlessly integrated with state-of-the-art data augmentation techniques. Extensive experiments across diverse natural and medical image recognition tasks validate its efficacy, demonstrating superior performance in both multi-domain and the more challenging single-domain generalization scenarios.

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