arXiv subjects

Hao Guan

Publications and source records attributed to Hao Guan.

25 records · Page 2Linked to original sources

arXiv2022

DomainATM: Domain Adaptation Toolbox for Medical Data Analysis

Domain adaptation (DA) is an important technique for modern machine learning-based medical data analysis, which aims at reducing distribution differences between different medical datasets. A proper domain adaptation method can significantly enhance the statistical power by pooling data acquired from multiple sites/centers. To this end, we have developed the Domain Adaptation Toolbox for Medical data analysis (DomainATM) - an open-source software package designed for fast facilitation and easy customization of domain adaptation methods for medical data analysis. The DomainATM is implemented in MATLAB with a user-friendly graphical interface, and it consists of a collection of popular data adaptation algorithms that have been extensively applied to medical image analysis and computer vision. With DomainATM, researchers are able to facilitate fast feature-level and image-level adaptation, visualization and performance evaluation of different adaptation methods for medical data analysis. More importantly, the DomainATM enables the users to develop and test their own adaptation methods through scripting, greatly enhancing its utility and extensibility. An overview characteristic and usage of DomainATM is presented and illustrated with three example experiments, demonstrating its effectiveness, simplicity, and flexibility. The software, source code, and manual are available online.

cs.CV↗

arXiv2021

MRI-based Alzheimer's disease prediction via distilling the knowledge in multi-modal data

Mild cognitive impairment (MCI) conversion prediction, i.e., identifying MCI patients of high risks converting to Alzheimer's disease (AD), is essential for preventing or slowing the progression of AD. Although previous studies have shown that the fusion of multi-modal data can effectively improve the prediction accuracy, their applications are largely restricted by the limited availability or high cost of multi-modal data. Building an effective prediction model using only magnetic resonance imaging (MRI) remains a challenging research topic. In this work, we propose a multi-modal multi-instance distillation scheme, which aims to distill the knowledge learned from multi-modal data to an MRI-based network for MCI conversion prediction. In contrast to existing distillation algorithms, the proposed multi-instance probabilities demonstrate a superior capability of representing the complicated atrophy distributions, and can guide the MRI-based network to better explore the input MRI. To our best knowledge, this is the first study that attempts to improve an MRI-based prediction model by leveraging extra supervision distilled from multi-modal information. Experiments demonstrate the advantage of our framework, suggesting its potentials in the data-limited clinical settings.

eess.IV↗

arXiv2021

Brain Age Estimation From MRI Using Cascade Networks with Ranking Loss

Chronological age of healthy people is able to be predicted accurately using deep neural networks from neuroimaging data, and the predicted brain age could serve as a biomarker for detecting aging-related diseases. In this paper, a novel 3D convolutional network, called two-stage-age-network (TSAN), is proposed to estimate brain age from T1-weighted MRI data. Compared with existing methods, TSAN has the following improvements. First, TSAN uses a two-stage cascade network architecture, where the first-stage network estimates a rough brain age, then the second-stage network estimates the brain age more accurately from the discretized brain age by the first-stage network. Second, to our knowledge, TSAN is the first work to apply novel ranking losses in brain age estimation, together with the traditional mean square error (MSE) loss. Third, densely connected paths are used to combine feature maps with different scales. The experiments with $6586$ MRIs showed that TSAN could provide accurate brain age estimation, yielding mean absolute error (MAE) of $2.428$ and Pearson's correlation coefficient (PCC) of $0.985$, between the estimated and chronological ages. Furthermore, using the brain age gap between brain age and chronological age as a biomarker, Alzheimer's disease (AD) and Mild Cognitive Impairment (MCI) can be distinguished from healthy control (HC) subjects by support vector machine (SVM). Classification AUC in AD/HC and MCI/HC was $0.904$ and $0.823$, respectively. It showed that brain age gap is an effective biomarker associated with risk of dementia, and has potential for early-stage dementia risk screening. The codes and trained models have been released on GitHub: https://github.com/Milan-BUAA/TSAN-brain-age-estimation.

eess.IV↗

arXiv2021

Domain Adaptation for Medical Image Analysis: A Survey

Machine learning techniques used in computer-aided medical image analysis usually suffer from the domain shift problem caused by different distributions between source/reference data and target data. As a promising solution, domain adaptation has attracted considerable attention in recent years. The aim of this paper is to survey the recent advances of domain adaptation methods in medical image analysis. We first present the motivation of introducing domain adaptation techniques to tackle domain heterogeneity issues for medical image analysis. Then we provide a review of recent domain adaptation models in various medical image analysis tasks. We categorize the existing methods into shallow and deep models, and each of them is further divided into supervised, semi-supervised and unsupervised methods. We also provide a brief summary of the benchmark medical image datasets that support current domain adaptation research. This survey will enable researchers to gain a better understanding of the current status, challenges.

cs.CV↗

arXiv2019

NODE: Extreme Low Light Raw Image Denoising using a Noise Decomposition Network

Denoising extreme low light images is a challenging task due to the high noise level. When the illumination is low, digital cameras increase the ISO (electronic gain) to amplify the brightness of captured data. However, this in turn amplifies the noise, arising from read, shot, and defective pixel sources. In the raw domain, read and shot noise are effectively modelled using Gaussian and Poisson distributions respectively, whereas defective pixels can be modeled with impulsive noise. In extreme low light imaging, noise removal becomes a critical challenge to produce a high quality, detailed image with low noise. In this paper, we propose a multi-task deep neural network called Noise Decomposition (NODE) that explicitly and separately estimates defective pixel noise, in conjunction with Gaussian and Poisson noise, to denoise an extreme low light image. Our network is purposely designed to work with raw data, for which the noise is more easily modeled before going through non-linear transformations in the image signal processing (ISP) pipeline. Quantitative and qualitative evaluation show the proposed method to be more effective at denoising real raw images than state-of-the-art techniques.

eess.IV↗

arXiv2016

Waveform Candidates for 5G Networks: Analysis and Comparison

As the next generation cellular system, 5G network is required to provide a large variety of services for different kinds of terminals, from traditional voice and data services over mobile phones to small packet transmission over massive machine-type terminals. Although orthogonal-subcarrier based waveform has been widely used nowadays in many practical systems, it can hardly meet the future requirements in the coming 5G networks. Therefore, more flexible waveforms have been proposed to address the unprecedented challenges. In this article, we will provide comprehensive analysis and comparison for the typical waveform candidates. To obtain insightful analysis, we will not only introduce the basic principles of the waveforms but also reveal the underlying characteristics of each waveform. Moreover, a comprehensive comparison in terms of different performance metrics will be also presented in this article, which provide an overall understanding of the new waveforms.

cs.IT↗

arXiv2011

Randomized $Δ$-Edge-Coloring via Quaternion of Complex Colors

This paper explores the application of a new algebraic method of color exchanges to the edge coloring of simple graphs. Vizing's theorem states that the edge coloring of a simple graph $G$ requires either $Δ$ or $Δ+1$ colors, where $Δ$ is the maximum vertex degree of $G$. Holyer proved that it is {\bf NP}-complete to decide whether $G$ is $Δ$-edge-colorable even for cubic graphs. By introducing the concept of complex colors, we show that the color-exchange operation follows the same multiplication rules as quaternion. An initially $Δ$-edge-colored graph $G$ allows variable-colored edges, which can be eliminated by color exchanges in a manner similar to variable eliminations in solving systems of linear equations. The problem is solved if all variables are eliminated and a properly $Δ$-edge-colored graph is reached. For a randomly generated graph $G$, we prove that our algorithm returns a proper $Δ$-edge-coloring with a probability of at least 1/2 in $O(Δ|V||E|^5)$ time if $G$ is $Δ$-edge-colorable. Otherwise, the algorithm halts in polynomial time and signals the impossibility of a solution, meaning that the chromatic index of $G$ probably equals $Δ+1$. Animations of the edge-coloring algorithms proposed in this paper are posted at YouTube http://www.youtube.com/watch?v=KMnj4UMYl7k.

cs.DS↗