arXiv subjects

Hao Peng

Publications and source records attributed to Hao Peng.

At least 217 records · Page 12Linked to original sources

arXiv2024

Multiomics-based Outcome Prediction for the Treatment of Brain Metastases with Personalized Ultra-fractionated Stereotactic Adaptive Radiotherapy (PULSAR)

Purpose: We aimed to develop a data-driven multiomics approach integrating radiomics, dosiomics, and delta features to predict treatment response at an earlier stage (intra-treatment) for brain metastases (BMs) patients treated with PULSAR. Methods: We conducted a retrospective study of 39 patients with 69 BMs treated with PULSAR. Radiomics, dosiomics, and delta features were extracted from pretreatment and intra-treatment MRI scans and dose distributions. Six individual models and an ensemble feature selection (EFS) model were constructed using SVM and evaluated via stratified 5-fold cross-validation. The classification task distinguished lesions with >20% volume reduction at follow-up. We assessed performance metrics including sensitivity, specificity, accuracy, precision, F1 score, and AUC. Various feature extraction and ensemble selection scenarios were explored to enhance model robustness and reduce overfitting. Results: The EFS model, integrating features from pre-treatment radiomics and dosiomics, intra-treatment radiomics, and delta-radiomics, outperformed six individual models. It achieved an AUC of 0.979, accuracy of 0.917, and F1 score of 0.821. Among the top 9 features, six were derived from post-wavelet transformation, and three from original images. The discrete wavelet transform decomposes volumetric images into multi-resolution components, offering a more comprehensive characterization of underlying structures. Conclusion: Our study demonstrated the feasibility of employing a data-driven multiomics approach to predict tumor volume changes in BMs patients with PULSAR. The EFS model demonstrates enhanced performance compared with six individual models, emphasizing the importance of integrating both pretreatment and intra-treatment data. This application holds promise for optimizing BMs management, potentially mitigating risks associated with under- or over-treatment.

physics.med-ph↗

arXiv2024

KoLA: Carefully Benchmarking World Knowledge of Large Language Models

The unprecedented performance of large language models (LLMs) necessitates improvements in evaluations. Rather than merely exploring the breadth of LLM abilities, we believe meticulous and thoughtful designs are essential to thorough, unbiased, and applicable evaluations. Given the importance of world knowledge to LLMs, we construct a Knowledge-oriented LLM Assessment benchmark (KoLA), in which we carefully design three crucial factors: (1) For \textbf{ability modeling}, we mimic human cognition to form a four-level taxonomy of knowledge-related abilities, covering $19$ tasks. (2) For \textbf{data}, to ensure fair comparisons, we use both Wikipedia, a corpus prevalently pre-trained by LLMs, along with continuously collected emerging corpora, aiming to evaluate the capacity to handle unseen data and evolving knowledge. (3) For \textbf{evaluation criteria}, we adopt a contrastive system, including overall standard scores for better numerical comparability across tasks and models and a unique self-contrast metric for automatically evaluating knowledge-creating ability. We evaluate $28$ open-source and commercial LLMs and obtain some intriguing findings. The KoLA dataset and open-participation leaderboard are publicly released at https://kola.xlore.cn and will be continuously updated to provide references for developing LLMs and knowledge-related systems.

cs.CL↗

arXiv2024

Incremental Measurement of Structural Entropy for Dynamic Graphs

Structural entropy is a metric that measures the amount of information embedded in graph structure data under a strategy of hierarchical abstracting. To measure the structural entropy of a dynamic graph, we need to decode the optimal encoding tree corresponding to the best community partitioning for each snapshot. However, the current methods do not support dynamic encoding tree updating and incremental structural entropy computation. To address this issue, we propose Incre-2dSE, a novel incremental measurement framework that dynamically adjusts the community partitioning and efficiently computes the updated structural entropy for each updated graph. Specifically, Incre-2dSE includes incremental algorithms based on two dynamic adjustment strategies for two-dimensional encoding trees, i.e., the naive adjustment strategy and the node-shifting adjustment strategy, which support theoretical analysis of updated structural entropy and incrementally optimize community partitioning towards a lower structural entropy. We conduct extensive experiments on 3 artificial datasets generated by Hawkes Process and 3 real-world datasets. Experimental results confirm that our incremental algorithms effectively capture the dynamic evolution of the communities, reduce time consumption, and provide great interpretability.

cs.IT↗

arXiv2024

LM-Infinite: Zero-Shot Extreme Length Generalization for Large Language Models

Today's large language models (LLMs) typically train on short text segments (e.g., <4K tokens) due to the quadratic complexity of their Transformer architectures. As a result, their performance suffers drastically on inputs longer than those encountered during training, substantially limiting their applications in real-world tasks involving long contexts such as encoding scientific articles, code repositories, or long dialogues. Through theoretical analysis and empirical investigation, this work identifies three major factors contributing to this length generalization failure. Our theoretical analysis further reveals that commonly used techniques like truncating the attention window or relative positional encodings are inadequate to address them. Answering these challenges, we propose LM-Infinite, a simple and effective method for enhancing LLMs' capabilities of handling long contexts. LM-Infinite is highly flexible and can be used with most modern LLMs off-the-shelf. Without any parameter updates, it allows LLMs pre-trained with 2K or 4K-long segments to generalize to up to 200M length inputs while retaining perplexity. It also improves performance on downstream tasks such as Passkey Retrieval and Qasper in the zero-shot setting. LM-Infinite brings substantial efficiency improvements: it achieves 2.7x decoding speed up and 7.5x memory saving over the original model. Our codes are released at \url{https://github.com/Glaciohound/LM-Infinite}.

cs.CL↗

arXiv2024

MAVEN-Arg: Completing the Puzzle of All-in-One Event Understanding Dataset with Event Argument Annotation

Understanding events in texts is a core objective of natural language understanding, which requires detecting event occurrences, extracting event arguments, and analyzing inter-event relationships. However, due to the annotation challenges brought by task complexity, a large-scale dataset covering the full process of event understanding has long been absent. In this paper, we introduce MAVEN-Arg, which augments MAVEN datasets with event argument annotations, making the first all-in-one dataset supporting event detection, event argument extraction (EAE), and event relation extraction. As an EAE benchmark, MAVEN-Arg offers three main advantages: (1) a comprehensive schema covering 162 event types and 612 argument roles, all with expert-written definitions and examples; (2) a large data scale, containing 98,591 events and 290,613 arguments obtained with laborious human annotation; (3) the exhaustive annotation supporting all task variants of EAE, which annotates both entity and non-entity event arguments in document level. Experiments indicate that MAVEN-Arg is quite challenging for both fine-tuned EAE models and proprietary large language models (LLMs). Furthermore, to demonstrate the benefits of an all-in-one dataset, we preliminarily explore a potential application, future event prediction, with LLMs. MAVEN-Arg and codes can be obtained from https://github.com/THU-KEG/MAVEN-Argument.

cs.CL↗

arXiv2024

Executable Code Actions Elicit Better LLM Agents

Large Language Model (LLM) agents, capable of performing a broad range of actions, such as invoking tools and controlling robots, show great potential in tackling real-world challenges. LLM agents are typically prompted to produce actions by generating JSON or text in a pre-defined format, which is usually limited by constrained action space (e.g., the scope of pre-defined tools) and restricted flexibility (e.g., inability to compose multiple tools). This work proposes to use executable Python code to consolidate LLM agents' actions into a unified action space (CodeAct). Integrated with a Python interpreter, CodeAct can execute code actions and dynamically revise prior actions or emit new actions upon new observations through multi-turn interactions. Our extensive analysis of 17 LLMs on API-Bank and a newly curated benchmark shows that CodeAct outperforms widely used alternatives (up to 20% higher success rate). The encouraging performance of CodeAct motivates us to build an open-source LLM agent that interacts with environments by executing interpretable code and collaborates with users using natural language. To this end, we collect an instruction-tuning dataset CodeActInstruct that consists of 7k multi-turn interactions using CodeAct. We show that it can be used with existing data to improve models in agent-oriented tasks without compromising their general capability. CodeActAgent, finetuned from Llama2 and Mistral, is integrated with Python interpreter and uniquely tailored to perform sophisticated tasks (e.g., model training) using existing libraries and autonomously self-debug.

cs.CL↗

arXiv2024

Promotional Language and the Adoption of Innovative Ideas in Science

How are the merits of innovative ideas communicated in science? Here we conduct semantic analyses of grant application success with a focus on scientific promotional language, which has been growing in frequency in many contexts and purportedly may convey an innovative idea's originality and significance. Our analysis attempts to surmount limitations of prior studies by examining the full text of tens of thousands of both funded and unfunded grants from three leading public and private funding agencies: the NIH, the NSF, and the Novo Nordisk Foundation, one of the world's largest private science foundations. We find a robust association between promotional language and the support and adoption of innovative ideas by funders and other scientists. First, the percentage of promotional language in a grant proposal is associated with up to a doubling of the grant's probability of being funded. Second, a grant's promotional language reflects its intrinsic level of innovativeness. Third, the percentage of promotional language predicts the expected citation and productivity impact of publications that are supported by funded grants. Lastly, a computer-assisted experiment that manipulates the promotional language in our data demonstrates how promotional language can communicate the merit of ideas through cognitive activation. With the incidence of promotional language in science steeply rising, and the pivotal role of grants in converting promising and aspirational ideas into solutions, our analysis provides empirical evidence that promotional language is associated with effectively communicating the merits of innovative scientific ideas.

cs.DL↗

arXiv2024

M&M VTO: Multi-Garment Virtual Try-On and Editing

We present M&M VTO, a mix and match virtual try-on method that takes as input multiple garment images, text description for garment layout and an image of a person. An example input includes: an image of a shirt, an image of a pair of pants, "rolled sleeves, shirt tucked in", and an image of a person. The output is a visualization of how those garments (in the desired layout) would look like on the given person. Key contributions of our method are: 1) a single stage diffusion based model, with no super resolution cascading, that allows to mix and match multiple garments at 1024x512 resolution preserving and warping intricate garment details, 2) architecture design (VTO UNet Diffusion Transformer) to disentangle denoising from person specific features, allowing for a highly effective finetuning strategy for identity preservation (6MB model per individual vs 4GB achieved with, e.g., dreambooth finetuning); solving a common identity loss problem in current virtual try-on methods, 3) layout control for multiple garments via text inputs specifically finetuned over PaLI-3 for virtual try-on task. Experimental results indicate that M&M VTO achieves state-of-the-art performance both qualitatively and quantitatively, as well as opens up new opportunities for virtual try-on via language-guided and multi-garment try-on.

cs.CV↗

arXiv2024

PyGOD: A Python Library for Graph Outlier Detection

PyGOD is an open-source Python library for detecting outliers in graph data. As the first comprehensive library of its kind, PyGOD supports a wide array of leading graph-based methods for outlier detection under an easy-to-use, well-documented API designed for use by both researchers and practitioners. PyGOD provides modularized components of the different detectors implemented so that users can easily customize each detector for their purposes. To ease the construction of detection workflows, PyGOD offers numerous commonly used utility functions. To scale computation to large graphs, PyGOD supports functionalities for deep models such as sampling and mini-batch processing. PyGOD uses best practices in fostering code reliability and maintainability, including unit testing, continuous integration, and code coverage. To facilitate accessibility, PyGOD is released under a BSD 2-Clause license at https://pygod.org and at the Python Package Index (PyPI).

cs.LG↗

arXiv2024

R-ODE: Ricci Curvature Tells When You Will be Informed

Information diffusion prediction is fundamental to understand the structure and organization of the online social networks, and plays a crucial role to blocking rumor spread, influence maximization, political propaganda, etc. So far, most existing solutions primarily predict the next user who will be informed with historical cascades, but ignore an important factor in the diffusion process - the time. Such limitation motivates us to pose the problem of the time-aware personalized information diffusion prediction for the first time, telling the time when the target user will be informed. In this paper, we address this problem from a fresh geometric perspective of Ricci curvature, and propose a novel Ricci-curvature regulated Ordinary Differential Equation (R-ODE). In the diffusion process, R-ODE considers that the inter-correlated users are organized in a dynamic system in the representation space, and the cascades give the observations sampled from the continuous realm. At each infection time, the message diffuses along the largest Ricci curvature, signifying less transportation effort. In the continuous realm, the message triggers users' movement, whose trajectory in the space is parameterized by an ODE with graph neural network. Consequently, R-ODE predicts the infection time of a target user by the movement trajectory learnt from the observations. Extensive experiments evaluate the personalized time prediction ability of R-ODE, and show R-ODE outperforms the state-of-the-art baselines.

cs.SI↗

arXiv2024

LSEnet: Lorentz Structural Entropy Neural Network for Deep Graph Clustering

Graph clustering is a fundamental problem in machine learning. Deep learning methods achieve the state-of-the-art results in recent years, but they still cannot work without predefined cluster numbers. Such limitation motivates us to pose a more challenging problem of graph clustering with unknown cluster number. We propose to address this problem from a fresh perspective of graph information theory (i.e., structural information). In the literature, structural information has not yet been introduced to deep clustering, and its classic definition falls short of discrete formulation and modeling node features. In this work, we first formulate a differentiable structural information (DSI) in the continuous realm, accompanied by several theoretical results. By minimizing DSI, we construct the optimal partitioning tree where densely connected nodes in the graph tend to have the same assignment, revealing the cluster structure. DSI is also theoretically presented as a new graph clustering objective, not requiring the predefined cluster number. Furthermore, we design a neural LSEnet in the Lorentz model of hyperbolic space, where we integrate node features to structural information via manifold-valued graph convolution. Extensive empirical results on real graphs show the superiority of our approach.

cs.LG↗

arXiv2024

SeBot: Structural Entropy Guided Multi-View Contrastive Learning for Social Bot Detection

Recent advancements in social bot detection have been driven by the adoption of Graph Neural Networks. The social graph, constructed from social network interactions, contains benign and bot accounts that influence each other. However, previous graph-based detection methods that follow the transductive message-passing paradigm may not fully utilize hidden graph information and are vulnerable to adversarial bot behavior. The indiscriminate message passing between nodes from different categories and communities results in excessively homogeneous node representations, ultimately reducing the effectiveness of social bot detectors. In this paper, we propose SEBot, a novel multi-view graph-based contrastive learning-enabled social bot detector. In particular, we use structural entropy as an uncertainty metric to optimize the entire graph's structure and subgraph-level granularity, revealing the implicitly existing hierarchical community structure. And we design an encoder to enable message passing beyond the homophily assumption, enhancing robustness to adversarial behaviors of social bots. Finally, we employ multi-view contrastive learning to maximize mutual information between different views and enhance the detection performance through multi-task learning. Experimental results demonstrate that our approach significantly improves the performance of social bot detection compared with SOTA methods.

cs.SI↗

arXiv2024

Event GDR: Event-Centric Generative Document Retrieval

Generative document retrieval, an emerging paradigm in information retrieval, learns to build connections between documents and identifiers within a single model, garnering significant attention. However, there are still two challenges: (1) neglecting inner-content correlation during document representation; (2) lacking explicit semantic structure during identifier construction. Nonetheless, events have enriched relations and well-defined taxonomy, which could facilitate addressing the above two challenges. Inspired by this, we propose Event GDR, an event-centric generative document retrieval model, integrating event knowledge into this task. Specifically, we utilize an exchange-then-reflection method based on multi-agents for event knowledge extraction. For document representation, we employ events and relations to model the document to guarantee the comprehensiveness and inner-content correlation. For identifier construction, we map the events to well-defined event taxonomy to construct the identifiers with explicit semantic structure. Our method achieves significant improvement over the baselines on two datasets, and also hopes to provide insights for future research.

cs.IR↗

arXiv2024

Multi-Relational Structural Entropy

Structural Entropy (SE) measures the structural information contained in a graph. Minimizing or maximizing SE helps to reveal or obscure the intrinsic structural patterns underlying graphs in an interpretable manner, finding applications in various tasks driven by networked data. However, SE ignores the heterogeneity inherent in the graph relations, which is ubiquitous in modern networks. In this work, we extend SE to consider heterogeneous relations and propose the first metric for multi-relational graph structural information, namely, Multi-relational Structural Entropy (MrSE). To this end, we first cast SE through the novel lens of the stationary distribution from random surfing, which readily extends to multi-relational networks by considering the choices of both nodes and relation types simultaneously at each step. The resulting MrSE is then optimized by a new greedy algorithm to reveal the essential structures within a multi-relational network. Experimental results highlight that the proposed MrSE offers a more insightful interpretation of the structure of multi-relational graphs compared to SE. Additionally, it enhances the performance of two tasks that involve real-world multi-relational graphs, including node clustering and social event detection.

cs.SI↗

arXiv2024

Hyperbolic Geometric Latent Diffusion Model for Graph Generation

Diffusion models have made significant contributions to computer vision, sparking a growing interest in the community recently regarding the application of them to graph generation. Existing discrete graph diffusion models exhibit heightened computational complexity and diminished training efficiency. A preferable and natural way is to directly diffuse the graph within the latent space. However, due to the non-Euclidean structure of graphs is not isotropic in the latent space, the existing latent diffusion models effectively make it difficult to capture and preserve the topological information of graphs. To address the above challenges, we propose a novel geometrically latent diffusion framework HypDiff. Specifically, we first establish a geometrically latent space with interpretability measures based on hyperbolic geometry, to define anisotropic latent diffusion processes for graphs. Then, we propose a geometrically latent diffusion process that is constrained by both radial and angular geometric properties, thereby ensuring the preservation of the original topological properties in the generative graphs. Extensive experimental results demonstrate the superior effectiveness of HypDiff for graph generation with various topologies.

cs.LG↗

arXiv2024

BotDGT: Dynamicity-aware Social Bot Detection with Dynamic Graph Transformers

Detecting social bots has evolved into a pivotal yet intricate task, aimed at combating the dissemination of misinformation and preserving the authenticity of online interactions. While earlier graph-based approaches, which leverage topological structure of social networks, yielded notable outcomes, they overlooked the inherent dynamicity of social networks -- In reality, they largely depicted the social network as a static graph and solely relied on its most recent state. Due to the absence of dynamicity modeling, such approaches are vulnerable to evasion, particularly when advanced social bots interact with other users to camouflage identities and escape detection. To tackle these challenges, we propose BotDGT, a novel framework that not only considers the topological structure, but also effectively incorporates dynamic nature of social network. Specifically, we characterize a social network as a dynamic graph. A structural module is employed to acquire topological information from each historical snapshot. Additionally, a temporal module is proposed to integrate historical context and model the evolving behavior patterns exhibited by social bots and legitimate users. Experimental results demonstrate the superiority of BotDGT against the leading methods that neglected the dynamic nature of social networks in terms of accuracy, recall, and F1-score.

cs.SI↗

arXiv2024

Retrieval Head Mechanistically Explains Long-Context Factuality

Despite the recent progress in long-context language models, it remains elusive how transformer-based models exhibit the capability to retrieve relevant information from arbitrary locations within the long context. This paper aims to address this question. Our systematic investigation across a wide spectrum of models reveals that a special type of attention heads are largely responsible for retrieving information, which we dub retrieval heads. We identify intriguing properties of retrieval heads:(1) universal: all the explored models with long-context capability have a set of retrieval heads; (2) sparse: only a small portion (less than 5\%) of the attention heads are retrieval. (3) intrinsic: retrieval heads already exist in models pretrained with short context. When extending the context length by continual pretraining, it is still the same set of heads that perform information retrieval. (4) dynamically activated: take Llama-2 7B for example, 12 retrieval heads always attend to the required information no matter how the context is changed. The rest of the retrieval heads are activated in different contexts. (5) causal: completely pruning retrieval heads leads to failure in retrieving relevant information and results in hallucination, while pruning random non-retrieval heads does not affect the model's retrieval ability. We further show that retrieval heads strongly influence chain-of-thought (CoT) reasoning, where the model needs to frequently refer back the question and previously-generated context. Conversely, tasks where the model directly generates the answer using its intrinsic knowledge are less impacted by masking out retrieval heads. These observations collectively explain which internal part of the model seeks information from the input tokens. We believe our insights will foster future research on reducing hallucination, improving reasoning, and compressing the KV cache.

cs.CL↗

arXiv2024

Knowledge Graph Context-Enhanced Diversified Recommendation

The field of Recommender Systems (RecSys) has been extensively studied to enhance accuracy by leveraging users' historical interactions. Nonetheless, this persistent pursuit of accuracy frequently engenders diminished diversity, culminating in the well-recognized "echo chamber" phenomenon. Diversified RecSys has emerged as a countermeasure, placing diversity on par with accuracy and garnering noteworthy attention from academic circles and industry practitioners. This research explores the realm of diversified RecSys within the intricate context of knowledge graphs (KG). These KGs act as repositories of interconnected information concerning entities and items, offering a propitious avenue to amplify recommendation diversity through the incorporation of insightful contextual information. Our contributions include introducing an innovative metric, Entity Coverage, and Relation Coverage, which effectively quantifies diversity within the KG domain. Additionally, we introduce the Diversified Embedding Learning (DEL) module, meticulously designed to formulate user representations that possess an innate awareness of diversity. In tandem with this, we introduce a novel technique named Conditional Alignment and Uniformity (CAU). It adeptly encodes KG item embeddings while preserving contextual integrity. Collectively, our contributions signify a substantial stride towards augmenting the panorama of recommendation diversity within the realm of KG-informed RecSys paradigms.

cs.IR↗