arXiv subjects

Haoran Dou

Publications and source records attributed to Haoran Dou.

At least 19 recordsLinked to original sources

arXiv2026

HeartVolMesh: Cardiac Volumetric Mesh Reconstruction via Covariance-Guided Graph Deformation

Accurate patient-specific tetrahedral cardiac meshes are essential for in-silico trials, yet common segmentation-then-modelling pipelines can blur thin-wall anatomy and offer limited cross-case correspondence. We propose HeartVolMesh, which lifts each template vertex to an anisotropic Gaussian kernel and uses a 3D CNN-GNN to predict per-vertex displacements and Cholesky-parameterized covariances from volumetric images. Training is guided by a covariance-aware negative log-likelihood loss with lightweight mesh regularization. For volumetric meshing, we warp a fixed tetrahedral template to the reconstructed surface via staged alignment, non-rigid registration, and deformation propagation, preserving connectivity and correspondence by construction, with resolution controlled by template density. Experiments show consistent gains over deformation-based baselines in surface mesh accuracy and volumetric mesh fidelity.

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arXiv2026

Conditional Latent Diffusion Model with Fourier-based Motion Modelling for Virtual Population Synthesis

In-silico trials of medical devices require the generation of virtual populations of anatomies. In cardiovascular applications, virtual anatomy is typically represented as a 3D+t mesh sampled from a generative model. However, most existing mesh generators focus on static anatomy, while sequence models often lack explicit periodicity. To this end, we propose 4D F-MeshLDM, a conditional generative framework comprising a convolutional mesh VAE to encode meshes, a structural latent space that parameterises motion using a truncated Fourier series, and a diffusion prior that learns the latent distribution over Fourier coefficient tokens. By conditioning the diffusion process on clinical covariates via affine modulation, we enable controllable synthesis. Sampling tokens and performing inverse Fourier synthesis yield cycle-consistent latent trajectories, which can be decoded into 3D+t cardiac mesh sequences. Experiments on 5,000 UK Biobank subjects demonstrate that 4D F-MeshLDM outperforms state-of-the-art baselines in anatomical fidelity and achieves near-zero cycle closure error. Furthermore, the generated cohorts accurately preserve clinical functional indices, highlighting the potential of our framework for reliable in-silico cardiac trials.

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arXiv2026

The dual effect of group-scale environments on galaxy quenching during cluster infall: pre-processing and protection

Context. It is well established that the cluster environment effectively quenches star formation in member galaxies. Amis. We aim to explore how the accretion path of infalling galaxies influences the cluster-driven quenching process. Methods. We compiled a large spectroscopic galaxy sample around 25 low-redshift, X-ray luminous massive clusters. We identified cluster substructures using the Blooming Tree algorithm and distinguished between galaxies accreted as part of group-scale structures and those accreted in isolation. The infall process was quantified using an infall proxy, $d_{\rm R}$, defined in the $R$--$V$ diagram. Results. Along the infall process, the quiescent fraction remains approximately constant at the outskirts and then increases steadily toward cluster center, with a transition occurring around $d_{\rm R}\sim 2.5$. We find that group-associated galaxies follow a distinct quenching track compared to isolated galaxies, indicating a dual effect of group-scale environments. At the early infall stages, group galaxies exhibit a higher quiescent fraction, consistent with ``pre-processing'' in group-scale halos. However, after entering the cluster environment, the rise in their quiescent fraction is delayed to smaller $d_{\rm R}$ compared to isolated galaxies. This suggests a phenomenological ``protection'' effect, in which group-scale halos buffer member galaxies against rapid cluster-driven quenching. Conclusions. We conclude that group-scale environments affect quenching in two ways: via pre-processing prior to cluster infall, and through a subsequent protection effect within the cluster environment.

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arXiv2026

Artificial Intelligence for Detecting Fetal Orofacial Clefts and Advancing Medical Education

Orofacial clefts are among the most common congenital craniofacial abnormalities, yet accurate prenatal detection remains challenging due to the scarcity of experienced specialists and the relative rarity of the condition. Early and reliable diagnosis is essential to enable timely clinical intervention and reduce associated morbidity. Here we show that an artificial intelligence system, trained on over 45,139 ultrasound images from 9,215 fetuses across 22 hospitals, can diagnose fetal orofacial clefts with sensitivity and specificity exceeding 93% and 95% respectively, matching the performance of senior radiologists and substantially outperforming junior radiologists. When used as a medical copilot, the system raises junior radiologists' sensitivity by more than 6%. Beyond direct diagnostic assistance, the system also accelerates the development of clinical expertise. A pilot study involving 24 radiologists and trainees demonstrated that the model can improve the expertise development for rare conditions. This dual-purpose approach offers a scalable solution for improving both diagnostic accuracy and specialist training in settings where experienced radiologists are scarce.

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arXiv2026

The Optical Properties of Host Galaxies of Radio Sources in the Coma Cluster

We present a comprehensive study of host galaxies of radio sources within the 1.35$R_{200}$ of the Coma cluster by combining deep 144MHz observations from the LOFAR Two-Metre Sky Survey (LoTSS-DR2) with optical spectroscopy and photometry from DESI and SDSS. We identify 79 spectroscopically confirmed cluster members with reliable radio emission and classify them into compact, extended, and tailed subsamples according to their radio morphologies. By combining their radio and optical properties, we find compact radio sources are predominantly associated with massive, quiescent galaxies driven by AGN activity, while tailed sources are largely hosted by star-forming galaxies, tracing ongoing ram pressure stripping (RPS). Using phase-space analysis and a projected infall time proxy ($d_R$), we find that extended sources are preferentially located in the cluster outskirts ($d_R > 1$), while tailed sources are concentrated in the intermediate infall region ($0.4 < d_R < 1.0$), highlighting the influence of the dense intracluster medium.

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arXiv2025

Mass stratification in the globular cluster system revealing the assembly history of the nearest S0 galaxy NGC 3115

Galaxy formation and evolution is hierarchical. The most massive galaxies are thought to form their central regions early through violent dissipational processes, then grow inside-out by accreting smaller satellites. While widely supported, direct observational confirmation of this process in individual galaxies remains lacking, except for the Milky Way. We present a detailed analysis of globular cluster (GC) candidates within a $70^\prime$ ($\sim190$ kpc) radius around the nearest S0 galaxy, NGC 3115, using images in \textit{g,r,z} bands from the DESI Legacy Imaging Surveys and data from Gaia. We report the discovery of mass stratification in the GC system (GCS), evident in two ways: first, the effective radius of the GCS increases monotonically from the bright to faint end, up to the detection limit near the turnover magnitude of the GC luminosity function (GCLF); second, the GCLF shows fainter turnover magnitudes and smaller standard deviations at larger galactocentric radii. This stratification cannot be readily explained by radial migration or tidal dissolution, but most likely reflects the hierarchical assembly of NGC 3115's stellar halo, with later-accreted satellites deposited across broader galactocentric distances. This interpretation is supported by cosmological simulations of subhalos with comparable mass and bulge-to-total mass ratios and is consistent with the negative color gradients observed in the GCS. Additionally, we identify several substructures within the GCS, indicating ongoing assembly of NGC 3115. This work highlights the power of GCS as tracers of galaxy assembly and sets the stage for upcoming space-based wide-field imaging surveys to constrain the assembly of massive galaxies.

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arXiv2025

An Efficient Model-Driven Groupwise Approach for Atlas Construction

Atlas construction is fundamental to medical image analysis, offering a standardized spatial reference for tasks such as population-level anatomical modeling. While data-driven registration methods have recently shown promise in pairwise settings, their reliance on large training datasets, limited generalizability, and lack of true inference phases in groupwise contexts hinder their practical use. In contrast, model-driven methods offer training-free, theoretically grounded, and data-efficient alternatives, though they often face scalability and optimization challenges when applied to large 3D datasets. In this work, we introduce DARC (Diffeomorphic Atlas Registration via Coordinate descent), a novel model-driven groupwise registration framework for atlas construction. DARC supports a broad range of image dissimilarity metrics and efficiently handles arbitrary numbers of 3D images without incurring GPU memory issues. Through a coordinate descent strategy and a centrality-enforcing activation function, DARC produces unbiased, diffeomorphic atlases with high anatomical fidelity. Beyond atlas construction, we demonstrate two key applications: (1) One-shot segmentation, where labels annotated only on the atlas are propagated to subjects via inverse deformations, outperforming state-of-the-art few-shot methods; and (2) shape synthesis, where new anatomical variants are generated by warping the atlas mesh using synthesized diffeomorphic deformation fields. Overall, DARC offers a flexible, generalizable, and resource-efficient framework for atlas construction and applications.

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arXiv2025

MTCNet: Motion and Topology Consistency Guided Learning for Mitral Valve Segmentationin 4D Ultrasound

Mitral regurgitation is one of the most prevalent cardiac disorders. Four-dimensional (4D) ultrasound has emerged as the primary imaging modality for assessing dynamic valvular morphology. However, 4D mitral valve (MV) analysis remains challenging due to limited phase annotations, severe motion artifacts, and poor imaging quality. Yet, the absence of inter-phase dependency in existing methods hinders 4D MV analysis. To bridge this gap, we propose a Motion-Topology guided consistency network (MTCNet) for accurate 4D MV ultrasound segmentation in semi-supervised learning (SSL). MTCNet requires only sparse end-diastolic and end-systolic annotations. First, we design a cross-phase motion-guided consistency learning strategy, utilizing a bi-directional attention memory bank to propagate spatio-temporal features. This enables MTCNet to achieve excellent performance both per- and inter-phase. Second, we devise a novel topology-guided correlation regularization that explores physical prior knowledge to maintain anatomically plausible. Therefore, MTCNet can effectively leverage structural correspondence between labeled and unlabeled phases. Extensive evaluations on the first largest 4D MV dataset, with 1408 phases from 160 patients, show that MTCNet performs superior cross-phase consistency compared to other advanced methods (Dice: 87.30%, HD: 1.75mm). Both the code and the dataset are available at https://github.com/crs524/MTCNet.

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arXiv2025

UltraTwin: Towards Cardiac Anatomical Twin Generation from Multi-view 2D Ultrasound

Echocardiography is routine for cardiac examination. However, 2D ultrasound (US) struggles with accurate metric calculation and direct observation of 3D cardiac structures. Moreover, 3D US is limited by low resolution, small field of view and scarce availability in practice. Constructing the cardiac anatomical twin from 2D images is promising to provide precise treatment planning and clinical quantification. However, it remains challenging due to the rare paired data, complex structures, and US noises. In this study, we introduce a novel generative framework UltraTwin, to obtain cardiac anatomical twin from sparse multi-view 2D US. Our contribution is three-fold. First, pioneered the construction of a real-world and high-quality dataset containing strictly paired multi-view 2D US and CT, and pseudo-paired data. Second, we propose a coarse-to-fine scheme to achieve hierarchical reconstruction optimization. Last, we introduce an implicit autoencoder for topology-aware constraints. Extensive experiments show that UltraTwin reconstructs high-quality anatomical twins versus strong competitors. We believe it advances anatomical twin modeling for potential applications in personalized cardiac care.

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arXiv2025

Uncertainty-aware Diffusion and Reinforcement Learning for Joint Plane Localization and Anomaly Diagnosis in 3D Ultrasound

Congenital uterine anomalies (CUAs) can lead to infertility, miscarriage, preterm birth, and an increased risk of pregnancy complications. Compared to traditional 2D ultrasound (US), 3D US can reconstruct the coronal plane, providing a clear visualization of the uterine morphology for assessing CUAs accurately. In this paper, we propose an intelligent system for simultaneous automated plane localization and CUA diagnosis. Our highlights are: 1) we develop a denoising diffusion model with local (plane) and global (volume/text) guidance, using an adaptive weighting strategy to optimize attention allocation to different conditions; 2) we introduce a reinforcement learning-based framework with unsupervised rewards to extract the key slice summary from redundant sequences, fully integrating information across multiple planes to reduce learning difficulty; 3) we provide text-driven uncertainty modeling for coarse prediction, and leverage it to adjust the classification probability for overall performance improvement. Extensive experiments on a large 3D uterine US dataset show the efficacy of our method, in terms of plane localization and CUA diagnosis. Code is available at https://github.com/yuhoo0302/CUA-US.

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arXiv2025

Estimating infall times of galaxies around clusters: how accurately can it be done with observational data?

Context. The environment plays a crucial role in galaxy evolution, particularly for galaxies infalling into clusters. Accurately estimating the infall times of galaxies from observations can significantly enhance our understanding of the environmental effects on galaxy evolution. Aims. This paper aims to evaluate existing methods for estimating infall times via the $R-V$ diagram, explore possible strategies to improve accuracy in estimating infall times, and discuss fundamental limitations. Methods. We utilize a TNG300-1 simulation and construct the $R-V$ diagram that is directly comparable to the observations. Using the same dataset, we systematically compare four commonly used methods, including the projected radii, caustic profiles, and two discrete methods. A simple linear partition is also considered as a reference. Results. Each method exhibits distinct characteristics. While the linear partition slightly outperforms other methods, all methods suffer from limited accuracy ($\gtrsim 2.6$ Gyr), constrained by the intrinsic dispersion ($2.53$ Gyr) of infall times in the $R-V$ diagram. Given this limit, we explore two potential approaches that can improve accuracy: (1) the infall time dispersion is smaller in more dynamically relaxed clusters, and (2) employing two estimates of infall times instead of one reduces the dispersion to $\lesssim1.5$ Gyr. We further demonstrate that the intrinsic dispersion primarily arises from orbital overlap: galaxies in different orbital phases overlap with each other in the $R-V$ diagram and thus appear indistinguishable. Conclusions. Orbital overlap fundamentally limits the accuracy of infall time estimation. The linear partition approach could be a simple and robust estimation.

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arXiv2025

From Pixels to Polygons: A Survey of Deep Learning Approaches for Medical Image-to-Mesh Reconstruction

Deep learning-based medical image-to-mesh reconstruction has rapidly evolved, enabling the transformation of medical imaging data into three-dimensional mesh models that are critical in computational medicine and in silico trials for advancing our understanding of disease mechanisms, and diagnostic and therapeutic techniques in modern medicine. This survey systematically categorizes existing approaches into four main categories: template models, statistical models, generative models, and implicit models. Each category is analysed in detail, examining their methodological foundations, strengths, limitations, and applicability to different anatomical structures and imaging modalities. We provide an extensive evaluation of these methods across various anatomical applications, from cardiac imaging to neurological studies, supported by quantitative comparisons using standard metrics. Additionally, we compile and analyze major public datasets available for medical mesh reconstruction tasks and discuss commonly used evaluation metrics and loss functions. The survey identifies current challenges in the field, including requirements for topological correctness, geometric accuracy, and multi-modality integration. Finally, we present promising future research directions in this domain. This systematic review aims to serve as a comprehensive reference for researchers and practitioners in medical image analysis and computational medicine.

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arXiv2025

Flip Learning: Weakly Supervised Erase to Segment Nodules in Breast Ultrasound

Accurate segmentation of nodules in both 2D breast ultrasound (BUS) and 3D automated breast ultrasound (ABUS) is crucial for clinical diagnosis and treatment planning. Therefore, developing an automated system for nodule segmentation can enhance user independence and expedite clinical analysis. Unlike fully-supervised learning, weakly-supervised segmentation (WSS) can streamline the laborious and intricate annotation process. However, current WSS methods face challenges in achieving precise nodule segmentation, as many of them depend on inaccurate activation maps or inefficient pseudo-mask generation algorithms. In this study, we introduce a novel multi-agent reinforcement learning-based WSS framework called Flip Learning, which relies solely on 2D/3D boxes for accurate segmentation. Specifically, multiple agents are employed to erase the target from the box to facilitate classification tag flipping, with the erased region serving as the predicted segmentation mask. The key contributions of this research are as follows: (1) Adoption of a superpixel/supervoxel-based approach to encode the standardized environment, capturing boundary priors and expediting the learning process. (2) Introduction of three meticulously designed rewards, comprising a classification score reward and two intensity distribution rewards, to steer the agents' erasing process precisely, thereby avoiding both under- and over-segmentation. (3) Implementation of a progressive curriculum learning strategy to enable agents to interact with the environment in a progressively challenging manner, thereby enhancing learning efficiency. Extensively validated on the large in-house BUS and ABUS datasets, our Flip Learning method outperforms state-of-the-art WSS methods and foundation models, and achieves comparable performance as fully-supervised learning algorithms.

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arXiv2024

Ctrl-GenAug: Controllable Generative Augmentation for Medical Sequence Classification

In the medical field, the limited availability of large-scale datasets and labor-intensive annotation processes hinder the performance of deep models. Diffusion-based generative augmentation approaches present a promising solution to this issue, having been proven effective in advancing downstream medical recognition tasks. Nevertheless, existing works lack sufficient semantic and sequential steerability for challenging video/3D sequence generation, and neglect quality control of noisy synthesized samples, resulting in unreliable synthetic databases and severely limiting the performance of downstream tasks. In this work, we present Ctrl-GenAug, a novel and general generative augmentation framework that enables highly semantic- and sequential-customized sequence synthesis and suppresses incorrectly synthesized samples, to aid medical sequence classification. Specifically, we first design a multimodal conditions-guided sequence generator for controllably synthesizing diagnosis-promotive samples. A sequential augmentation module is integrated to enhance the temporal/stereoscopic coherence of generated samples. Then, we propose a noisy synthetic data filter to suppress unreliable cases at semantic and sequential levels. Extensive experiments on 3 medical datasets, using 11 networks trained on 3 paradigms, comprehensively analyze the effectiveness and generality of Ctrl-GenAug, particularly in underrepresented high-risk populations and out-domain conditions.

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arXiv2024

Robust Box Prompt based SAM for Medical Image Segmentation

The Segment Anything Model (SAM) can achieve satisfactory segmentation performance under high-quality box prompts. However, SAM's robustness is compromised by the decline in box quality, limiting its practicality in clinical reality. In this study, we propose a novel Robust Box prompt based SAM (\textbf{RoBox-SAM}) to ensure SAM's segmentation performance under prompts with different qualities. Our contribution is three-fold. First, we propose a prompt refinement module to implicitly perceive the potential targets, and output the offsets to directly transform the low-quality box prompt into a high-quality one. We then provide an online iterative strategy for further prompt refinement. Second, we introduce a prompt enhancement module to automatically generate point prompts to assist the box-promptable segmentation effectively. Last, we build a self-information extractor to encode the prior information from the input image. These features can optimize the image embeddings and attention calculation, thus, the robustness of SAM can be further enhanced. Extensive experiments on the large medical segmentation dataset including 99,299 images, 5 modalities, and 25 organs/targets validated the efficacy of our proposed RoBox-SAM.

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arXiv2024

Non-Adversarial Learning: Vector-Quantized Common Latent Space for Multi-Sequence MRI

Adversarial learning helps generative models translate MRI from source to target sequence when lacking paired samples. However, implementing MRI synthesis with adversarial learning in clinical settings is challenging due to training instability and mode collapse. To address this issue, we leverage intermediate sequences to estimate the common latent space among multi-sequence MRI, enabling the reconstruction of distinct sequences from the common latent space. We propose a generative model that compresses discrete representations of each sequence to estimate the Gaussian distribution of vector-quantized common (VQC) latent space between multiple sequences. Moreover, we improve the latent space consistency with contrastive learning and increase model stability by domain augmentation. Experiments using BraTS2021 dataset show that our non-adversarial model outperforms other GAN-based methods, and VQC latent space aids our model to achieve (1) anti-interference ability, which can eliminate the effects of noise, bias fields, and artifacts, and (2) solid semantic representation ability, with the potential of one-shot segmentation. Our code is publicly available.

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arXiv2024

HeartBeat: Towards Controllable Echocardiography Video Synthesis with Multimodal Conditions-Guided Diffusion Models

Echocardiography (ECHO) video is widely used for cardiac examination. In clinical, this procedure heavily relies on operator experience, which needs years of training and maybe the assistance of deep learning-based systems for enhanced accuracy and efficiency. However, it is challenging since acquiring sufficient customized data (e.g., abnormal cases) for novice training and deep model development is clinically unrealistic. Hence, controllable ECHO video synthesis is highly desirable. In this paper, we propose a novel diffusion-based framework named HeartBeat towards controllable and high-fidelity ECHO video synthesis. Our highlight is three-fold. First, HeartBeat serves as a unified framework that enables perceiving multimodal conditions simultaneously to guide controllable generation. Second, we factorize the multimodal conditions into local and global ones, with two insertion strategies separately provided fine- and coarse-grained controls in a composable and flexible manner. In this way, users can synthesize ECHO videos that conform to their mental imagery by combining multimodal control signals. Third, we propose to decouple the visual concepts and temporal dynamics learning using a two-stage training scheme for simplifying the model training. One more interesting thing is that HeartBeat can easily generalize to mask-guided cardiac MRI synthesis in a few shots, showcasing its scalability to broader applications. Extensive experiments on two public datasets show the efficacy of the proposed HeartBeat.

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arXiv2024

Unsupervised Domain Adaptation for Brain Vessel Segmentation through Transwarp Contrastive Learning

Unsupervised domain adaptation (UDA) aims to align the labelled source distribution with the unlabelled target distribution to obtain domain-invariant predictive models. Since cross-modality medical data exhibit significant intra and inter-domain shifts and most are unlabelled, UDA is more important while challenging in medical image analysis. This paper proposes a simple yet potent contrastive learning framework for UDA to narrow the inter-domain gap between labelled source and unlabelled target distribution. Our method is validated on cerebral vessel datasets. Experimental results show that our approach can learn latent features from labelled 3DRA modality data and improve vessel segmentation performance in unlabelled MRA modality data.

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