SearcharxivSearch

arXiv subjects

Harry Richardson

Publications and source records attributed to Harry Richardson.

2 recordsLinked to original sources

Lost in Translation: Simulation-Informed Bayesian Inference Improves Understanding of Molecular Motion From Neutron Scattering

Quasi-elastic neutron scattering (QENS) probes atomic and molecular motion on length and time scales central to catalysis, energy materials, and gas adsorption. However, conventional analytical fitting of QENS spectra often fails to uniquely determine the underlying dynamics. The flexibility of simplified line-shape models can make spectra generated by distinct physical processes statistically indistinguishable, leading to ambiguous or inaccurate mechanistic interpretation. By integrating molecular dynamics simulations, physically derived $Q$-dependent scattering models, Bayesian model discrimination, and polarisation analysis, we demonstrate that QENS can, for the first time, resolve anisotropic rotational motion in liquid benzene, a prototypical aromatic molecule relevant to microporous catalysis. The extracted spinning and tumbling diffusion coefficients suggest stronger anisotropy than previously recognised. This integrated, Bayesian evidence-based analytical framework defines a new paradigm for QENS, enabling direct resolution of the rotational and translational dynamics that govern molecular interactions and transport; the fundamental processes and rate-limiting steps in confined hydrocarbon catalysis.

physics.chem-ph

On the Estimation of Centre of Mass in Periodic Systems

Calculation of the centre of mass of a group of particles in a periodically-repeating cell is an important aspect of chemical and physical simulation. One popular approach calculates the centre of mass via the projection of the individual particles' coordinates onto a circle [Bai \& Breen, \emph{J. Graph. Tools}, \textbf{13}(4), 53, (2008)]. However, this approach involves averaging of the particles in a non-physically meaningful way resulting in inaccurate centres of mass. Instead the intrinsic weighted average should be computed, but the analytical calculation of this is computationally expensive and complex. Here, we propose a more computationally efficient approach to compute the intrinsic mean that is suitable for the majority of chemical systems.

physics.chem-ph