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Hayden Nunley

Publications and source records attributed to Hayden Nunley.

4 recordsLinked to original sources

A model of replicating coupled oscillators generates naturally occurring cell networks

When a founder cell and its progeny divide with incomplete cytokinesis, a network forms in which each intercellular bridge corresponds to a past mitotic event. Networks built in this manner are required for gamete production in many animals, and different species have evolved very different final network topologies. While mechanisms regulating network assembly have been identified in particular organisms, we lack a quantitative framework to understand network assembly and inter-species variability. Motivated by cell networks responsible for oocyte production in invertebrates, where the final topology is typically invariant within each species, we devise a mathematical model for generating cell networks: each node is an oscillator, and after a full cycle, the node produces a daughter to which it remains connected. These cell cycle oscillations on the nodes are transient and coupled via diffusion over the network's edges. By variation of three biologically motivated parameters, our model generates nearly all such networks currently reported across invertebrates. Furthermore, small parameter variations can rationalize cases of within-species variation. Because cell networks outside of the ovary often form less deterministically, we propose generalizations of our model to account for different sources of stochasticity.

nlin.AO

Comparison of coherence area measurement techniques for bright entangled twin beams

Quantum states of light with multiple spatial modes are fundamental for quantum imaging and parallel quantum information processing. Thus, their characterization, which can be achieved through measurements of the coherence area, is an important area of research. We present a comparative study between two different measurement techniques for the coherence area of bright entangled twin beams of light generated with a four-wave mixing process in a hot rubidium vapor cell. The first one provides a direct characterization of the size of the coherence area and is based on correlation measurements between spatial intensity fluctuations of the twin beams with an electron-multiplying charge-coupled-device camera. The second one provides an indirect measure and is based on a noise analysis of different spatial regions of the twin beams in the time domain with a single photodiode. We show that the indirect technique, which can be implemented with a significantly less complicated measurement scheme, gives an estimate of the size of the coherence area consistent with the direct measurement technique performed in the spatial domain.

physics.optics

Multicellular actomyosin cables in epithelia under external anisotropic stress

The alignment of cell-cell junctions and associated cortical actomyosin across multiple cells to form supracellular cables in an epithelium is an example of the long range tissue organization that drives morphogenesis. Here we demonstrate that the ability of tissues to assemble these parallel cables depends on the initial packing topology of the cells in the epithelium. Using a computational vertex model we develop two methods of measuring a disordered tissue's favorability to forming cables under an external stress. These measures quantify the deformation of cells and the distribution of tension in the tissue under stress. Using these measures we show that passive stress-induced cell flow reduces a tissue's ability to form cables, whereas oriented divisions create a packing which can sustain multiple parallel cables. These measures are applied to a region of the the Drosophila demonstrating a shift to a more cable-friendly packing after a wave of oriented divisions in the region.

q-bio.TO

Observation of Spatial Quantum Correlations in the Macroscopic Regime

Spatial quantum correlations in the transverse degree of freedom promise to enhance optical resolution, image detection, and quantum communications through parallel quantum information encoding. In particular, the ability to observe these spatial quantum correlations in a single shot will enable such enhancements in applications that require real time imaging, such as particle tracking and in-situ imaging of atomic systems. Here, we report on measurements in the far-field that show spatial quantum correlations in single images of bright twin-beams with $10^8$ photons in a 1~$μ$s pulse using an electron-multiplying charge-coupled device camera. A four-wave mixing process in hot rubidium atoms is used to generate narrowband-bright pulsed twin-beams of light. Owing to momentum conservation in this process, the twin-beams are momentum correlated, which leads to spatial quantum correlations in the far field. We show around 2~dB of spatial quantum noise reduction with respect to the shot noise limit. The spatial squeezing is present over a large range of total number of photons in the pulsed twin-beams.

physics.optics