arXiv subjects

He Zhu

Publications and source records attributed to He Zhu.

At least 73 records · Page 4Linked to original sources

arXiv2025

Grounding 3D Object Affordance with Language Instructions, Visual Observations and Interactions

Grounding 3D object affordance is a task that locates objects in 3D space where they can be manipulated, which links perception and action for embodied intelligence. For example, for an intelligent robot, it is necessary to accurately ground the affordance of an object and grasp it according to human instructions. In this paper, we introduce a novel task that grounds 3D object affordance based on language instructions, visual observations and interactions, which is inspired by cognitive science. We collect an Affordance Grounding dataset with Points, Images and Language instructions (AGPIL) to support the proposed task. In the 3D physical world, due to observation orientation, object rotation, or spatial occlusion, we can only get a partial observation of the object. So this dataset includes affordance estimations of objects from full-view, partial-view, and rotation-view perspectives. To accomplish this task, we propose LMAffordance3D, the first multi-modal, language-guided 3D affordance grounding network, which applies a vision-language model to fuse 2D and 3D spatial features with semantic features. Comprehensive experiments on AGPIL demonstrate the effectiveness and superiority of our method on this task, even in unseen experimental settings. Our project is available at https://sites.google.com/view/lmaffordance3d.

cs.CV↗

arXiv2025

Multi-view Reconstruction via SfM-guided Monocular Depth Estimation

In this paper, we present a new method for multi-view geometric reconstruction. In recent years, large vision models have rapidly developed, performing excellently across various tasks and demonstrating remarkable generalization capabilities. Some works use large vision models for monocular depth estimation, which have been applied to facilitate multi-view reconstruction tasks in an indirect manner. Due to the ambiguity of the monocular depth estimation task, the estimated depth values are usually not accurate enough, limiting their utility in aiding multi-view reconstruction. We propose to incorporate SfM information, a strong multi-view prior, into the depth estimation process, thus enhancing the quality of depth prediction and enabling their direct application in multi-view geometric reconstruction. Experimental results on public real-world datasets show that our method significantly improves the quality of depth estimation compared to previous monocular depth estimation works. Additionally, we evaluate the reconstruction quality of our approach in various types of scenes including indoor, streetscape, and aerial views, surpassing state-of-the-art MVS methods. The code and supplementary materials are available at https://zju3dv.github.io/murre/ .

cs.CV↗

arXiv2025

Structural Entropy Guided Unsupervised Graph Out-Of-Distribution Detection

With the emerging of huge amount of unlabeled data, unsupervised out-of-distribution (OOD) detection is vital for ensuring the reliability of graph neural networks (GNNs) by identifying OOD samples from in-distribution (ID) ones during testing, where encountering novel or unknown data is inevitable. Existing methods often suffer from compromised performance due to redundant information in graph structures, which impairs their ability to effectively differentiate between ID and OOD data. To address this challenge, we propose SEGO, an unsupervised framework that integrates structural entropy into OOD detection regarding graph classification. Specifically, within the architecture of contrastive learning, SEGO introduces an anchor view in the form of coding tree by minimizing structural entropy. The obtained coding tree effectively removes redundant information from graphs while preserving essential structural information, enabling the capture of distinct graph patterns between ID and OOD samples. Furthermore, we present a multi-grained contrastive learning scheme at local, global, and tree levels using triplet views, where coding trees with essential information serve as the anchor view. Extensive experiments on real-world datasets validate the effectiveness of SEGO, demonstrating superior performance over state-of-the-art baselines in OOD detection. Specifically, our method achieves the best performance on 9 out of 10 dataset pairs, with an average improvement of 3.7\% on OOD detection datasets, significantly surpassing the best competitor by 10.8\% on the FreeSolv/ToxCast dataset pair.

cs.LG↗

arXiv2025

MdEval: Massively Multilingual Code Debugging

Code large language models (LLMs) have made significant progress in code debugging by directly generating the correct code based on the buggy code snippet. Programming benchmarks, typically consisting of buggy code snippet and their associated test cases, are used to assess the debugging capabilities of LLMs. However, many existing benchmarks primarily focus on Python and are often limited in terms of language diversity (e.g., DebugBench and DebugEval). To advance the field of multilingual debugging with LLMs, we propose the first massively multilingual debugging benchmark, which includes 3.6K test samples of 18 programming languages and covers the automated program repair (APR) task, the code review (CR) task, and the bug identification (BI) task. Further, we introduce the debugging instruction corpora MDEVAL-INSTRUCT by injecting bugs into the correct multilingual queries and solutions (xDebugGen). Further, a multilingual debugger xDebugCoder trained on MDEVAL-INSTRUCT as a strong baseline specifically to handle the bugs of a wide range of programming languages (e.g. "Missing Mut" in language Rust and "Misused Macro Definition" in language C). Our extensive experiments on MDEVAL reveal a notable performance gap between open-source models and closed-source LLMs (e.g., GPT and Claude series), highlighting huge room for improvement in multilingual code debugging scenarios.

cs.CL↗

arXiv2025

LayAlign: Enhancing Multilingual Reasoning in Large Language Models via Layer-Wise Adaptive Fusion and Alignment Strategy

Despite being pretrained on multilingual corpora, large language models (LLMs) exhibit suboptimal performance on low-resource languages. Recent approaches have leveraged multilingual encoders alongside LLMs by introducing trainable parameters connecting the two models. However, these methods typically focus on the encoder's output, overlooking valuable information from other layers. We propose \aname (\mname), a framework that integrates representations from all encoder layers, coupled with the \attaname mechanism to enable layer-wise interaction between the LLM and the multilingual encoder. Extensive experiments on multilingual reasoning tasks, along with analyses of learned representations, show that our approach consistently outperforms existing baselines.

cs.CL↗

arXiv2024

FastLGS: Speeding up Language Embedded Gaussians with Feature Grid Mapping

The semantically interactive radiance field has always been an appealing task for its potential to facilitate user-friendly and automated real-world 3D scene understanding applications. However, it is a challenging task to achieve high quality, efficiency and zero-shot ability at the same time with semantics in radiance fields. In this work, we present FastLGS, an approach that supports real-time open-vocabulary query within 3D Gaussian Splatting (3DGS) under high resolution. We propose the semantic feature grid to save multi-view CLIP features which are extracted based on Segment Anything Model (SAM) masks, and map the grids to low dimensional features for semantic field training through 3DGS. Once trained, we can restore pixel-aligned CLIP embeddings through feature grids from rendered features for open-vocabulary queries. Comparisons with other state-of-the-art methods prove that FastLGS can achieve the first place performance concerning both speed and accuracy, where FastLGS is 98x faster than LERF and 4x faster than LangSplat. Meanwhile, experiments show that FastLGS is adaptive and compatible with many downstream tasks, such as 3D segmentation and 3D object inpainting, which can be easily applied to other 3D manipulation systems.

cs.CV↗

arXiv2024

ukbFGSEA: an R Package for Applying Fast Preranked Gene Set Enrichment Analysis to UK Biobank Exome Data

The Genebass dataset, released by Karczewski et al. (2022), provides a comprehensive resource elucidating associations between genes and 4,529 phenotypes based on nearly 400,000 exomes from the UK Biobank. This extensive dataset enables the evaluation of gene set enrichment across a wide range of phenotypes, facilitating the inference of associations between specified gene sets and phenotypic traits. Despite its potential, no established method for applying gene set enrichment analysis (GSEA) to Genebass data exists. To address this gap, we propose utilizing fast pre-ranked gene set enrichment analysis (FGSEA) as a novel approach to determine whether a specified set of genes is significantly enriched in phenotypes within the UK Biobank. We developed an R package, ukbFGSEA, to implement this analysis, completed with a hands-on tutorial. Our approach has been validated by analyzing gene sets associated with autism spectrum disorder, developmental disorder, and neurodevelopmental disorders, demonstrating its capability to reveal established and novel associations.

q-bio.GN↗

arXiv2024

Exploring the Edges of Latent State Clusters for Goal-Conditioned Reinforcement Learning

Exploring unknown environments efficiently is a fundamental challenge in unsupervised goal-conditioned reinforcement learning. While selecting exploratory goals at the frontier of previously explored states is an effective strategy, the policy during training may still have limited capability of reaching rare goals on the frontier, resulting in reduced exploratory behavior. We propose "Cluster Edge Exploration" ($CE^2$), a new goal-directed exploration algorithm that when choosing goals in sparsely explored areas of the state space gives priority to goal states that remain accessible to the agent. The key idea is clustering to group states that are easily reachable from one another by the current policy under training in a latent space and traversing to states holding significant exploration potential on the boundary of these clusters before doing exploratory behavior. In challenging robotics environments including navigating a maze with a multi-legged ant robot, manipulating objects with a robot arm on a cluttered tabletop, and rotating objects in the palm of an anthropomorphic robotic hand, $CE^2$ demonstrates superior efficiency in exploration compared to baseline methods and ablations.

cs.LG↗

arXiv2024

Learning World Models for Unconstrained Goal Navigation

Learning world models offers a promising avenue for goal-conditioned reinforcement learning with sparse rewards. By allowing agents to plan actions or exploratory goals without direct interaction with the environment, world models enhance exploration efficiency. The quality of a world model hinges on the richness of data stored in the agent's replay buffer, with expectations of reasonable generalization across the state space surrounding recorded trajectories. However, challenges arise in generalizing learned world models to state transitions backward along recorded trajectories or between states across different trajectories, hindering their ability to accurately model real-world dynamics. To address these challenges, we introduce a novel goal-directed exploration algorithm, MUN (short for "World Models for Unconstrained Goal Navigation"). This algorithm is capable of modeling state transitions between arbitrary subgoal states in the replay buffer, thereby facilitating the learning of policies to navigate between any "key" states. Experimental results demonstrate that MUN strengthens the reliability of world models and significantly improves the policy's capacity to generalize across new goal settings.

cs.LG↗

arXiv2024

M2rc-Eval: Massively Multilingual Repository-level Code Completion Evaluation

Repository-level code completion has drawn great attention in software engineering, and several benchmark datasets have been introduced. However, existing repository-level code completion benchmarks usually focus on a limited number of languages (<5), which cannot evaluate the general code intelligence abilities across different languages for existing code Large Language Models (LLMs). Besides, the existing benchmarks usually report overall average scores of different languages, where the fine-grained abilities in different completion scenarios are ignored. Therefore, to facilitate the research of code LLMs in multilingual scenarios, we propose a massively multilingual repository-level code completion benchmark covering 18 programming languages (called M2RC-EVAL), and two types of fine-grained annotations (i.e., bucket-level and semantic-level) on different completion scenarios are provided, where we obtain these annotations based on the parsed abstract syntax tree. Moreover, we also curate a massively multilingual instruction corpora M2RC- INSTRUCT dataset to improve the repository-level code completion abilities of existing code LLMs. Comprehensive experimental results demonstrate the effectiveness of our M2RC-EVAL and M2RC-INSTRUCT.

cs.CL↗

arXiv2024

Which Client is Reliable?: A Reliable and Personalized Prompt-based Federated Learning for Medical Image Question Answering

Conventional medical artificial intelligence (AI) models face barriers in clinical application and ethical issues owing to their inability to handle the privacy-sensitive characteristics of medical data. We present a novel personalized federated learning (pFL) method for medical visual question answering (VQA) models, addressing privacy reliability challenges in the medical domain. Our method introduces learnable prompts into a Transformer architecture to efficiently train it on diverse medical datasets without massive computational costs. Then we introduce a reliable client VQA model that incorporates Dempster-Shafer evidence theory to quantify uncertainty in predictions, enhancing the model's reliability. Furthermore, we propose a novel inter-client communication mechanism that uses maximum likelihood estimation to balance accuracy and uncertainty, fostering efficient integration of insights across clients.

cs.CV↗

arXiv2024

TrajGPT: Irregular Time-Series Representation Learning for Health Trajectory Analysis

In many domains, such as healthcare, time-series data is often irregularly sampled with varying intervals between observations. This poses challenges for classical time-series models that require equally spaced data. To address this, we propose a novel time-series Transformer called Trajectory Generative Pre-trained Transformer (TrajGPT). TrajGPT employs a novel Selective Recurrent Attention (SRA) mechanism, which utilizes a data-dependent decay to adaptively filter out irrelevant past information based on contexts. By interpreting TrajGPT as discretized ordinary differential equations (ODEs), it effectively captures the underlying continuous dynamics and enables time-specific inference for forecasting arbitrary target timesteps. Experimental results demonstrate that TrajGPT excels in trajectory forecasting, drug usage prediction, and phenotype classification without requiring task-specific fine-tuning. By evolving the learned continuous dynamics, TrajGPT can interpolate and extrapolate disease risk trajectories from partially-observed time series. The visualization of predicted health trajectories shows that TrajGPT forecasts unseen diseases based on the history of clinically relevant phenotypes (i.e., contexts).

cs.LG↗

arXiv2024

Direct writing of high temperature superconducting Josephson junctions using a thermal scanning probe

In this letter, we demonstrate for the first time the creation of Josephson-like superconducting nanojunctions using a thermal scanning probe to directly inscribe weak links into microstrips of YBa2Cu3O7-x (YBCO). Our method effectively reduces the critical current (Ic) over an order of magnitude. The resulting nanobridges exhibit clear evidence of Josephson effects, of SNS-type junctions, as shown by both the DC and AC Josephson effects. This approach provides a novel and flexible method for scaling up quantum mechanical circuits that operate at liquid nitrogen temperatures. Additionally, it offers a promising pathway for modifying properties of the junctions in-situ and post fabrication.

cond-mat.supr-con↗

arXiv2024

TimelyGPT: Extrapolatable Transformer Pre-training for Long-term Time-Series Forecasting in Healthcare

Large-scale pre-trained models (PTMs) such as BERT and GPT have recently achieved great success in Natural Language Processing and Computer Vision domains. However, the development of PTMs on healthcare time-series data is lagging behind.This underscores the limitations of the existing transformer-based architectures, particularly their scalability to handle large-scale time series and ability to capture long-term temporal dependencies. In this study, we present Timely Generative Pre-trained Transformer (TimelyGPT). TimelyGPT employs an extrapolatable position (xPos) embedding to encode trend and periodic patterns into time-series representations. It also integrates recurrent attention and temporal convolution modules to effectively capture global-local temporal dependencies. We evaluated TimelyGPT on two large-scale healthcare time series datasets corresponding to continuous biosignals and irregularly-sampled time series, respectively. Our experiments show that during pre-training, TimelyGPT excels in learning time-series representations from continuously monitored biosignals and irregularly-sampled time series data commonly observed in longitudinal electronic health records (EHRs). In forecasting continuous biosignals, TimelyGPT achieves accurate extrapolation up to 6,000 timesteps of body temperature during the sleep stage transition, given a short look-up window (i.e., prompt) containing only 2,000 timesteps. For irregularly-sampled time series, TimelyGPT with a proposed time-specific inference demonstrates high top recall scores in predicting future diagnoses using early diagnostic records, effectively handling irregular intervals between clinical records. Together, we envision TimelyGPT to be useful in a broad spectrum of health domains, including long-term patient health state forecasting and patient risk trajectory prediction.

cs.LG↗

arXiv2024

Bidirectional Generative Pre-training for Improving Healthcare Time-series Representation Learning

Learning time-series representations for discriminative tasks, such as classification and regression, has been a long-standing challenge in the healthcare domain. Current pre-training methods are limited in either unidirectional next-token prediction or randomly masked token prediction. We propose a novel architecture called Bidirectional Timely Generative Pre-trained Transformer (BiTimelyGPT), which pre-trains on biosignals and longitudinal clinical records by both next-token and previous-token prediction in alternating transformer layers. This pre-training task preserves original distribution and data shapes of the time-series. Additionally, the full-rank forward and backward attention matrices exhibit more expressive representation capabilities. Using biosignals and longitudinal clinical records, BiTimelyGPT demonstrates superior performance in predicting neurological functionality, disease diagnosis, and physiological signs. By visualizing the attention heatmap, we observe that the pre-trained BiTimelyGPT can identify discriminative segments from biosignal time-series sequences, even more so after fine-tuning on the task.

cs.AI↗

arXiv2024

Formal-LLM: Integrating Formal Language and Natural Language for Controllable LLM-based Agents

Recent advancements on Large Language Models (LLMs) enable AI Agents to automatically generate and execute multi-step plans to solve complex tasks. However, since LLM's content generation process is hardly controllable, current LLM-based agents frequently generate invalid or non-executable plans, which jeopardizes the performance of the generated plans and corrupts users' trust in LLM-based agents. In response, this paper proposes a novel "Formal-LLM" framework for LLM-based agents by integrating the expressiveness of natural language and the precision of formal language. Specifically, the framework allows agent developers to express their requirements or constraints for the planning process as an automaton. A stack-based LLM plan generation process is then conducted under the supervision of the automaton to ensure that the generated plan satisfies the constraints, making the planning process controllable. We conduct experiments on both benchmark tasks and practical real-life tasks, and our framework achieves over 50% overall performance increase, which validates the feasibility and effectiveness of employing Formal-LLM to guide the plan generation of agents, preventing the agents from generating invalid and unsuccessful plans. Further, more controllable LLM-based agents can facilitate the broader utilization of LLM in application scenarios where high validity of planning is essential. The source code of this work is available at https://github.com/agiresearch/Formal-LLM.

cs.LG↗

arXiv2024

SAM-guided Graph Cut for 3D Instance Segmentation

This paper addresses the challenge of 3D instance segmentation by simultaneously leveraging 3D geometric and multi-view image information. Many previous works have applied deep learning techniques to 3D point clouds for instance segmentation. However, these methods often failed to generalize to various types of scenes due to the scarcity and low-diversity of labeled 3D point cloud data. Some recent works have attempted to lift 2D instance segmentations to 3D within a bottom-up framework. The inconsistency in 2D instance segmentations among views can substantially degrade the performance of 3D segmentation. In this work, we introduce a novel 3D-to-2D query framework to effectively exploit 2D segmentation models for 3D instance segmentation. Specifically, we pre-segment the scene into several superpoints in 3D, formulating the task into a graph cut problem. The superpoint graph is constructed based on 2D segmentation models, where node features are obtained from multi-view image features and edge weights are computed based on multi-view segmentation results, enabling the better generalization ability. To process the graph, we train a graph neural network using pseudo 3D labels from 2D segmentation models. Experimental results on the ScanNet, ScanNet++ and KITTI-360 datasets demonstrate that our method achieves robust segmentation performance and can generalize across different types of scenes. Our project page is available at https://zju3dv.github.io/sam_graph.

cs.CV↗

arXiv2024

FANNO: Augmenting High-Quality Instruction Data with Open-Sourced LLMs Only

Instruction fine-tuning stands as a crucial advancement in leveraging large language models (LLMs) for enhanced task performance. However, the annotation of instruction datasets has traditionally been expensive and laborious, often relying on manual annotations or costly API calls of proprietary LLMs. To address these challenges, we introduce FANNO, a fully autonomous, open-sourced framework that revolutionizes the annotation process without the need for pre-existing annotated data. Utilizing a Mistral-7b-instruct model, FANNO efficiently produces diverse and high-quality datasets through a structured process involving document pre-screening, instruction generation, and response generation. Experiments on Open LLM Leaderboard and AlpacaEval benchmark show that the FANNO can generate high-quality data with diversity and complexity for free, comparable to human-annotated or cleaned datasets like Alpaca-GPT4-Cleaned.

cs.CL↗