arXiv subjects

Hender Lopez

Publications and source records attributed to Hender Lopez.

8 recordsLinked to original sources

arXiv2026

Graphene Electric Double-Layer Transistors for Enhanced-Sensitivity Label-Free Detection of Human Serum Albumin

Accurate detection of human serum albumin (HSA) is essential for the early diagnosis and monitoring of renal and hepatic disorders. We present a graphene-based electrolyte-gated field-effect transistor (EGFET) for label-free, real-time quantification of HSA under non-Faradaic operation. Devices exploit the high interfacial capacitance of the electric double layer (EDL) to transduce electrostatic perturbations induced by albumin adsorption into measurable conductance modulation. Negatively charged HSA molecules induce systematic modulation of the graphene channel, producing a concentration-dependent displacement of the Dirac voltage consistent with p-type doping. To establish a molecular-level interpretation of the sensing response, Brownian Dynamics simulations show that HSA adsorbs onto graphene through multiple adsorption orientations associated with heterogeneous interfacial charge distributions and variable dipole alignments relative to the surface. Adsorption is energetically stabilized by van der Waals interactions. Analysis of transfer characteristics across concentrations ranging from 0.01 to 30mgmL-1 reveals a correlation between surface charge density and carrier transport modulation within the electric double layer. Optimized devices exhibit a limit of detection of 0.0087 mg mL-1 and a linear dynamic range extending to 10 mg mL-1. The response remains non-Faradaic under sub-volt operation with reversible and reproducible behavior. The use of an inverse-mobility analytical metric highlights the role of disorder-enhanced carrier scattering in signal amplification, enabling sensitive electrostatic detection while preserving reversible device operation. These results establish liquid-gated graphene EGFETs as a promising platform for quantitative protein sensing and provide insight into disorder-mediated transport mechanisms in graphene bioelectronic devices.

cond-mat.mes-hall↗

arXiv2025

Impact of protein corona morphology on nanoparticle diffusion in biological fluids: insights from a mesoscale approach

Nanoparticles (NPs) demonstrate considerable potential in medical applications, including targeted drug delivery and diagnostic probes. However, their efficacy depends on their ability to navigate through the complex biological environments inside living organisms. In such environments, NPs interact with a dense mixture of biomolecules, which can reduce their mobility and hinder diffusion. Understanding the factors influencing NP diffusion in these environments is key to improving nanomedicine design and predicting toxicological effects. In this study, we propose a computational approach to model NP diffusion in crowded environments. We introduce a mesoscale model that accounts for the combined effects of the Protein Corona (PC) and the crowded medium on NP movement. By including volume-exclusion interactions and modelling the PC both explicitly and implicitly, we identify key macromolecular descriptors that affect NP diffusion. Our results show that the morphology of the PC can significantly affect the diffusion of NPs, and the role of the occupied volume fraction and the size ratio between tracers and crowders are analysed. The results also show that approximating large macromolecular assemblies with a hydrodynamic single-sphere model leads to inexact diffusion estimates. To overcome the limitations of single-sphere representations, a strategy for an accurate parametrization of NP-PC systems using a single-sphere model is presented.

cond-mat.soft↗

arXiv2017

Contact inhibition of locomotion and junctional mechanics guide collective cell behavior in epithelial wound repair

Epithelial tissues form physically integrated barriers against the external environment protecting organs from infection and invasion. Within each tissue, epithelial cells respond to different challenges that can potentially compromise tissue integrity. In particular, cells collectively respond by reorganizing their cell-cell junctions and migrating directionally towards the sites of injury. Notwithstanding, the mechanisms that define the spatiotemporal scales and driving forces of these collective responses remain poorly understood. To address this we first analyzed the collective response of epithelial monolayers to injury and compare the results with different computational models of epithelial cells. We found that a model that integrates the mechanics of cells at the cell-cell and cell-substrate interface as well as contact inhibition of locomotion predicts two key properties of epithelial response to injury as: 1) local relaxation of the tissue and 2) collective responses involving the elongation of cells (basal and apical regions) and extension of cryptic lamellipodia that extend up to < 3 cell diameters from the site of injury. Our results therefore highlight the integration between junctional biomechanics, cell substrate adhesion and contact inhibition of locomotion to guide the rapid collective rearrangements that are required to preserve the epithelial barrier in response to injury.

physics.bio-ph↗

arXiv2016

Using single nanoparticle tracking obtained by nanophotonic force microscopy to simultaneously characterize nanoparticle size distribution and nanoparticle-surface interactions

Comprehensive characterization of nanomaterials for medical applications is a challenging and complex task due to the multitude of parameters which need to be taken into consideration in a broad range of conditions. Routine methods such as dynamic light scattering or nanoparticle tracking analysis provide some insight into the physicochemical properties of particle dispersions. For nanomedicine applications the information they supply can be of limited use. For this reason, there is a need for new methodologies and instruments that can provide additional data on nanoparticle properties such as their interactions with surfaces. Nanophotonic force microscopy has been shown as a viable method for measuring the force between surfaces and individual particles in the nano-size range. Here we outline a further application of this technique to measure the size of single particles and based on these measurement build the distribution of a sample. We demonstrate its efficacy by comparing the size distribution obtained with nanophotonic force microscopy to established instruments, such as dynamic light scattering and differential centrifugal sedimentation. Our results were in good agreement to those observed with all other instruments. Furthermore, we demonstrate that the methodology developed in this work can be used to study complex particle mixtures and the surface alteration of materials. For all cases studied, we were able to obtain both the size and the interaction potential of the particles with a surface in a single measurement.

cond-mat.soft↗

arXiv2016

Contact inhibition of locomotion and mechanical cross-talk between cell-cell and cell-substrate adhesion determines the pattern of junctional tension in epithelial cell aggregates

We generated a computational approach to analyze the biomechanics of epithelial cell aggregates, either island or stripes or entire monolayers, that combines both vertex and contact-inhibition-of-locomotion models to include both cell-cell and cell-substrate adhesion. Examination of the distribution of cell protrusions (adhesion to the substrate) in the model predicted high order profiles of cell organization that agree with those previously seen experimentally. Cells acquired an asymmetric distribution of basal protrusions, traction forces and apical aspect ratios that decreased when moving from the edge to the island center. Our in silico analysis also showed that tension on cell-cell junctions and apical stress is not homogeneous across the island. Instead, these parameters are higher at the island center and scales up with island size, which we confirmed experimentally using laser ablation assays and immunofluorescence. Without formally being a 3-dimensional model, our approach has the minimal elements necessary to reproduce the distribution of cellular forces and mechanical crosstalk as well as distribution of principal stress in cells within epithelial cell aggregates. By making experimental testable predictions, our approach would benefit the mechanical analysis of epithelial tissues, especially when local changes in cell-cell and/or cell-substrate adhesion drive collective cell behavior.

physics.bio-ph↗

arXiv2015

Multiscale modelling of bionano interface

In this work we describe a set of Coarse-grained (CG) tools that allow to simulate the uptake of the nanoparticles (NPs) coated with proteins by a lipid bilayer. We describe a CG model to calculate the adsorption energies and the most favorable adsorption orientations of proteins onto a hydrophobic NP. The proposed method is then used to calculate the adsorption energies of two common proteins in human blood onto neutral and negative charged NPs. We also report the effect of the NP radius on the adsorption energies and validate the proposed methodology against full atomistic simulations. We also describe a methodology in which full atomistic simulations of a lipid bilayer and various lipid-cholesterol mixtures are used for the extraction of CG pair potentials. We also compare and validate the predictions of simulations at molecular and CG level. Finally, we present a CG simulation of the interaction a bare NP and of a NP-protein complex with a lipid bilayer.

cond-mat.soft↗

arXiv2015

Coarse-grained model of adsorption of blood plasma proteins onto nanoparticles

We present a coarse-grained model for evaluation of interactions of globular proteins with nanoparticles. The protein molecules are represented by one bead per aminoacid and the nanoparticle by a homogeneous sphere that interacts with the aminoacids via a central force that depends on the nanoparticle size. The proposed methodology is used to predict the adsorption energies for six common human blood plasma proteins on hydrophobic charged or neutral nanoparticles of different sizes as well as the preferred orientation of the molecules upon adsorption. Our approach allows one to rank the proteins by their binding affinity to the nanoparticle, which can be used for predicting the composition of the NP-protein corona. The predicted ranking is in good agreement with known experimental data for protein adsorption on surfaces.

cond-mat.soft↗

arXiv2013

Gradient dynamics description for films of mixtures and suspensions - the case of dewetting triggered by coupled film height and concentration fluctuations

A gradient dynamics model based on an extended interface Hamiltonian is presented that is able to describe the dynamics of structuring processes in thin films of liquid mixtures, solutions and suspensions on solid substrates including coupled dewetting and decomposition. After discussing known limiting cases the model is employed to investigate the dewetting of thin films of liquid mixtures and suspensions under the influence of effective long-range van der Waals forces that depend on solute concentration. The occurring fluxes are discussed and it is shown that spinodal dewetting may be triggered through the coupling of film height and concentration fluctuations. Fully nonlinear calculations provide the time evolution and resulting steady film height and concentration profiles.

cond-mat.soft↗