arXiv subjects

Heng Li

Publications and source records attributed to Heng Li.

At least 73 records · Page 4Linked to original sources

arXiv2026

Empirical Characterization of Logging Smells in Machine Learning Code

Logging plays a central role in ensuring reproducibility, observability, and reliability in machine learning (ML) systems. While logging is generally considered a good engineering practice, poorly designed logging can negatively affect experiment tracking, security, debugging, and system performance. In this paper, we present an empirical study of logging smells in ML projects and propose a taxonomy of ML-specific logging smell types. We conducted a large-scale analysis of 444 ML repositories and manually labeled 2,448 instances of logging smells. Based on this analysis, we identified 12 categories of logging smells spanning security, metric management, configuration, verbosity, and context-related issues. Our results show that logging smells are widespread in ML systems and vary in frequency and manifestation across projects. To assess practical relevance, we conducted a survey with 27 ML practitioners. Most respondents agreed with the identified smells and reported that several types, including Logging Sensitive Data, Metric Overwrite, Missing Hyperparameter Logging, and Log Without Context, have a strong impact on reproducibility, maintainability, and trustworthiness. Other smells, such as Heavy Data Logging and Print-based Logging, were perceived as more context-dependent. We publicly release our labeled dataset to support future research. Our findings highlight logging quality as a critical and underexplored aspect of ML system engineering and open opportunities for automated detection and repair of logging issues.

cs.SE↗

arXiv2026

D2Dewarp: Dual Dimensions Geometric Representation Learning Based Document Image Dewarping

Document image dewarping remains a challenging task in the deep learning era. While existing methods have improved by leveraging text line awareness, they typically focus only on a single horizontal dimension. In this paper, we propose a fine-grained deformation perception model that focuses on Dual Dimensions of document horizontal-vertical-lines to improve document Dewarping called D2Dewarp. It can perceive distortion trends in different directions across document details. To combine the horizontal and vertical granularity features, an effective fusion module based on X and Y coordinate is designed to facilitate interaction and constraint between the two dimensions for feature complementarity. Due to the lack of annotated line features in current public dewarping datasets, we also propose an automatic fine-grained annotation method using public document texture images and automatic rendering engine to build a new large-scale distortion training dataset named DocDewarpHV. On three public Chinese and English benchmarks, both quantitative and qualitative results show that our method achieves better rectification results compared with the state-of-the-art methods. The code and dataset are available at https://github.com/xiaomore/D2Dewarp.

cs.CV↗

arXiv2026

Overcoming Joint Intractability with Lossless Hierarchical Speculative Decoding

Verification is a key bottleneck in improving inference speed while maintaining distribution fidelity in Speculative Decoding. Recent work has shown that sequence-level verification leads to a higher number of accepted tokens compared to token-wise verification. However, existing solutions often rely on surrogate approximations or are constrained by partial information, struggling with joint intractability. In this work, we propose Hierarchical Speculative Decoding (HSD), a provably lossless verification method that significantly boosts the expected number of accepted tokens and overcomes joint intractability by balancing excess and deficient probability mass across accessible branches. Our extensive large-scale experiments demonstrate that HSD yields consistent improvements in acceptance rates across diverse model families and benchmarks. Moreover, its strong explainability and generality make it readily integrable into a wide range of speculative decoding frameworks. Notably, integrating HSD into EAGLE-3 yields over a 12% performance gain, establishing state-of-the-art decoding efficiency without compromising distribution fidelity. Code is available at https://github.com/ZhouYuxuanYX/Hierarchical-Speculative-Decoding.

cs.AI↗

arXiv2026

Improving the Robustness of Large Language Models for Code Tasks via Fine-tuning with Perturbed Data

Context: In the fast-paced evolution of software development, Large Language Models (LLMs) have become indispensable tools for tasks such as code generation, completion, analysis, and bug fixing. Ensuring the robustness of these models against potential vulnerabilities from handling diverse inputs is critical, as variations in input can lead to incorrect or insecure code outputs. Objective: This work aims to improve the robustness of LLMs for coding-related tasks against potential adversarial inputs. Specifically, we investigate how fine-tuning LLMs with perturbed datasets impacts their robustness against input perturbations. Method: We systematically evaluated LLM robustness by fine-tuning models using datasets perturbed at character-level, word-level, and sentence-level, comparing results against base models and models fine-tuned on unperturbed datasets. Results: Fine-tuning LLMs with perturbed datasets significantly improves model robustness (RD usually drops around 4\% - 6\%), especially for models with relatively weak robustness. However, this fine-tuning process typically results in a slight performance decrease (pass@1 usually drops around 1\% - 3\%) compared to fine-tuning with unperturbed datasets, although occasional performance improvements are observed. Conclusion \& Implications: Fine-tuning LLMs for coding tasks with perturbed data effectively enhances their robustness at the cost of a minor performance reduction, emphasizing the importance of balancing the robustness and performance of LLMs for coding applications.

cs.SE↗

arXiv2026

MaxSup: Overcoming Representation Collapse in Label Smoothing

Label Smoothing (LS) is widely adopted to reduce overconfidence in neural network predictions and improve generalization. Despite these benefits, recent studies reveal two critical issues with LS. First, LS induces overconfidence in misclassified samples. Second, it compacts feature representations into overly tight clusters, diluting intra-class diversity, although the precise cause of this phenomenon remained elusive. In this paper, we analytically decompose the LS-induced loss, exposing two key terms: (i) a regularization term that dampens overconfidence only when the prediction is correct, and (ii) an error-amplification term that arises under misclassifications. This latter term compels the network to reinforce incorrect predictions with undue certainty, exacerbating representation collapse. To address these shortcomings, we propose Max Suppression (MaxSup), which applies uniform regularization to both correct and incorrect predictions by penalizing the top-1 logit rather than the ground-truth logit. Through extensive feature-space analyses, we show that MaxSup restores intra-class variation and sharpens inter-class boundaries. Experiments on large-scale image classification and multiple downstream tasks confirm that MaxSup is a more robust alternative to LS. Code is available at: https://github.com/ZhouYuxuanYX/Maximum-Suppression-Regularization

cs.LG↗

arXiv2026

Infinitely many accumulation points of codegree Turán densities

The codegree Turán density $γ(F)$ of a $k$-graph $F$ is the smallest $γ\in[0,1)$ such that every $k$-graph $H$ with $δ_{k-1}(H)\geq(γ+o(1))\vert V(H)\vert$ contains a copy of $F$. We prove that for all $k,r\in\mathbb{N}$ with $k\geq3$, $\frac{r-1}{r}$ is an accumulation point of $Γ^{(k)}=\{γ(F):F\text{ is a }k\text{-graph}\}$. This makes progress on a problem posed by Mubayi and Zhao.

math.CO↗

arXiv2026

Early and Prediagnostic Detection of Pancreatic Cancer from Computed Tomography

Pancreatic ductal adenocarcinoma (PDAC), one of the deadliest solid malignancies, is often detected at a late and inoperable stage. Retrospective reviews of prediagnostic CT scans, when conducted by expert radiologists aware that the patient later developed PDAC, frequently reveal lesions that were previously overlooked. To help detecting these lesions earlier, we developed an automated system named ePAI (early Pancreatic cancer detection with Artificial Intelligence). It was trained on data from 1,598 patients from a single medical center. In the internal test involving 1,009 patients, ePAI achieved an area under the receiver operating characteristic curve (AUC) of 0.939-0.999, a sensitivity of 95.3%, and a specificity of 98.7% for detecting small PDAC less than 2 cm in diameter, precisely localizing PDAC as small as 2 mm. In an external test involving 7,158 patients across 6 centers, ePAI achieved an AUC of 0.918-0.945, a sensitivity of 91.5%, and a specificity of 88.0%, precisely localizing PDAC as small as 5 mm. Importantly, ePAI detected PDACs on prediagnostic CT scans obtained 3 to 36 months before clinical diagnosis that had originally been overlooked by radiologists. It successfully detected and localized PDACs in 75 of 159 patients, with a median lead time of 347 days before clinical diagnosis. Our multi-reader study showed that ePAI significantly outperformed 30 board-certified radiologists by 50.3% (P < 0.05) in sensitivity while maintaining a comparable specificity of 95.4% in detecting PDACs early and prediagnostic. These findings suggest its potential of ePAI as an assistive tool to improve early detection of pancreatic cancer.

cs.CV↗

arXiv2026

Geometry-Grounded Gaussian Splatting

Gaussian Splatting (GS) has demonstrated impressive quality and efficiency in novel view synthesis. However, shape extraction from Gaussian primitives remains an open problem. Due to inadequate geometry parameterization and approximation, existing shape reconstruction methods suffer from poor multi-view consistency and are sensitive to floaters. In this paper, we present a rigorous theoretical derivation that establishes Gaussian primitives as a specific type of stochastic solids. This theoretical framework provides a principled foundation for Geometry-Grounded Gaussian Splatting by enabling the direct treatment of Gaussian primitives as explicit geometric representations. Using the volumetric nature of stochastic solids, our method efficiently renders high-quality depth maps for fine-grained geometry extraction. Experiments show that our method achieves the best shape reconstruction results among all Gaussian Splatting-based methods on public datasets.

cs.CV↗

arXiv2026

Automated Safety Benchmarking: A Multi-agent Pipeline for LVLMs

Large vision-language models (LVLMs) exhibit remarkable capabilities in cross-modal tasks but face significant safety challenges, which undermine their reliability in real-world applications. Efforts have been made to build LVLM safety evaluation benchmarks to uncover their vulnerability. However, existing benchmarks are hindered by their labor-intensive construction process, static complexity, and limited discriminative power. Thus, they may fail to keep pace with rapidly evolving models and emerging risks. To address these limitations, we propose VLSafetyBencher, the first automated system for LVLM safety benchmarking. VLSafetyBencher introduces four collaborative agents: Data Preprocessing, Generation, Augmentation, and Selection agents to construct and select high-quality samples. Experiments validates that VLSafetyBencher can construct high-quality safety benchmarks within one week at a minimal cost. The generated benchmark effectively distinguish safety, with a safety rate disparity of 70% between the most and least safe models.

cs.CL↗

arXiv2026

SPATIALGEN: Layout-guided 3D Indoor Scene Generation

Creating high-fidelity 3D models of indoor environments is essential for applications in design, virtual reality, and robotics. However, manual 3D modeling remains time-consuming and labor-intensive. While recent advances in generative AI have enabled automated scene synthesis, existing methods often face challenges in balancing visual quality, diversity, semantic consistency, and user control. A major bottleneck is the lack of a large-scale, high-quality dataset tailored to this task. To address this gap, we introduce a comprehensive synthetic dataset, featuring 12,328 structured annotated scenes with 57,431 rooms, and 4.7M photorealistic 2D renderings. Leveraging this dataset, we present SpatialGen, a novel multi-view multi-modal diffusion model that generates realistic and semantically consistent 3D indoor scenes. Given a 3D layout and a reference image (derived from a text prompt), our model synthesizes appearance (color image), geometry (scene coordinate map), and semantic (semantic segmentation map) from arbitrary viewpoints, while preserving spatial consistency across modalities. SpatialGen consistently generates superior results to previous methods in our experiments. We are open-sourcing our data and models to empower the community and advance the field of indoor scene understanding and generation.

cs.CV↗

arXiv2026

SecMLOps: A Comprehensive Framework for Integrating Security Throughout the MLOps Lifecycle

Machine Learning (ML) has emerged as a pivotal technology in the operation of large and complex systems, driving advancements in fields such as autonomous vehicles, healthcare diagnostics, and financial fraud detection. Despite its benefits, the deployment of ML models brings significant security challenges, such as adversarial attacks, which can compromise the integrity and reliability of these systems. To address these challenges, this paper builds upon the concept of Secure Machine Learning Operations (SecMLOps), providing a comprehensive framework designed to integrate robust security measures throughout the entire ML operations (MLOps) lifecycle. SecMLOps builds on the principles of MLOps by embedding security considerations from the initial design phase through to deployment and continuous monitoring. This framework is particularly focused on safeguarding against sophisticated attacks that target various stages of the MLOps lifecycle, thereby enhancing the resilience and trustworthiness of ML applications. A detailed advanced pedestrian detection system (PDS) use case demonstrates the practical application of SecMLOps in securing critical MLOps. Through extensive empirical evaluations, we highlight the trade-offs between security measures and system performance, providing critical insights into optimizing security without unduly impacting operational efficiency. Our findings underscore the importance of a balanced approach, offering valuable guidance for practitioners on how to achieve an optimal balance between security and performance in ML deployments across various domains.

cs.CR↗

arXiv2026

Empirical Characterization of Logging Smells in Machine Learning Code

\underline{Context:} Logging is a fundamental yet complex practice in software engineering, essential for monitoring, debugging, and auditing software systems. With the increasing integration of machine learning (ML) components into software systems, effective logging has become critical to ensure reproducibility, traceability, and observability throughout model training and deployment. Although various general-purpose and ML-specific logging frameworks exist, little is known about how these tools are actually used in practice or whether ML practitioners adopt consistent and effective logging strategies. To date, no empirical study has systematically characterized recurring bad logging practices--or logging smells--in ML System. \underline{Goal:} This study aims to empirically identify and characterize logging smells in ML systems, providing an evidence-based understanding of how logging is implemented and challenged in practice. \underline{Method:} We propose to conduct a large-scale mining of open-source ML repositories hosted on GitHub to catalogue recurring logging smells. Subsequently, a practitioner survey involving ML engineers will be conducted to assess the perceived relevance, severity, and frequency of the identified smells. \underline{Limitations:} % While The study's limitations include that While our findings may not be generalizable to closed-source industrial projects, we believe our study provides an essential step toward understanding and improving logging practices in ML development.

cs.SE↗

arXiv2026

RaffeSDG: Random Frequency Filtering enabled Single-source Domain Generalization for Medical Image Segmentation

Deep learning models often encounter challenges in making accurate inferences when there are domain shifts between the source and target data. This issue is particularly pronounced in clinical settings due to the scarcity of annotated data resulting from the professional and private nature of medical data. Although various cross-domain strategies have been explored, including frequency-based approaches that vary appearance while preserving semantics, many remain limited by data constraints and computational cost. To tackle domain shifts in data-scarce medical scenarios, we propose a Random frequency filtering enabled Single-source Domain Generalization algorithm (RaffeSDG), which promises robust out-of-domain inference with segmentation models trained on a single-source domain. A frequency filter-based data augmentation strategy is first proposed to promote domain variability within a single-source domain by introducing variations in frequency space and blending homologous samples. Then Gaussian filter-based structural saliency is also leveraged to learn robust representations across augmented samples, further facilitating the training of generalizable segmentation models. To validate the effectiveness of RaffeSDG, we conducted extensive experiments involving out-of-domain inference on segmentation tasks for three human tissues imaged by four diverse modalities. Through thorough investigations and comparisons, compelling evidence was observed in these experiments, demonstrating the potential and generalizability of RaffeSDG. The code is available at https://github.com/liamheng/Non-IID_Medical_Image_Segmentation.

cs.CV↗

arXiv2025

A Story About Cohesion and Separation: Label-Free Metric for Log Parser Evaluation

Log parsing converts log messages into structured event templates, allowing for automated log analysis and reducing manual inspection effort. To select the most compatible parser for a specific system, multiple evaluation metrics are commonly used for performance comparisons. However, existing evaluation metrics heavily rely on labeled log data, which limits prior studies to a fixed set of datasets and hinders parser evaluations and selections in the industry. Further, we discovered that different versions of ground-truth used in existing studies can lead to inconsistent performance conclusions. Motivated by these challenges, we propose a novel label-free template-level metric, PMSS (parser medoid silhouette score), to evaluate log parser performance. PMSS evaluates both parser grouping and template quality with medoid silhouette analysis and Levenshtein distance within a near-linear time complexity in general. To understand its relationship with label-based template-level metrics, FGA and FTA, we compared their evaluation outcomes for six log parsers on the standard corrected Loghub 2.0 dataset. Our results indicate that log parsers achieving the highest PMSS or FGA exhibit comparable performance, differing by only 2.1% on average in terms of the FGA score; the difference is 9.8% for FTA. PMSS is also significantly (p<1e-8) and positively correlated to both FGA and FTA: the Spearman's rho correlation coefficient of PMSS-FGA and PMSS-FTA are respectively 0.648 and 0.587, close to the coefficient between FGA and FTA (0.670). We further extended our discussion on how to interpret the conclusions from different metrics, identifying challenges in using PMSS, and provided guidelines on conducting parser selections with our metric. PMSS provides a valuable evaluation alternative when ground-truths are inconsistent or labels are unavailable.

cs.SE↗

arXiv2025

DeLightMono: Enhancing Self-Supervised Monocular Depth Estimation in Endoscopy by Decoupling Uneven Illumination

Self-supervised monocular depth estimation serves as a key task in the development of endoscopic navigation systems. However, performance degradation persists due to uneven illumination inherent in endoscopic images, particularly in low-intensity regions. Existing low-light enhancement techniques fail to effectively guide the depth network. Furthermore, solutions from other fields, like autonomous driving, require well-lit images, making them unsuitable and increasing data collection burdens. To this end, we present DeLight-Mono - a novel self-supervised monocular depth estimation framework with illumination decoupling. Specifically, endoscopic images are represented by a designed illumination-reflectance-depth model, and are decomposed with auxiliary networks. Moreover, a self-supervised joint-optimizing framework with novel losses leveraging the decoupled components is proposed to mitigate the effects of uneven illumination on depth estimation. The effectiveness of the proposed methods was rigorously verified through extensive comparisons and an ablation study performed on two public datasets.

cs.CV↗

arXiv2025

Finding low-complexity DNA sequences with longdust

Motivation: Low-complexity (LC) DNA sequences are compositionally repetitive sequences that are often associated with spurious homologous matches and variant calling artifacts. While algorithms for identifying LC sequences exist, they either do not define complexity mathematically or are inefficient with long or variable context windows. Results: Longdust is a new algorithm that efficiently identifies long LC sequences including centromeric satellite and tandem repeats with moderately long motifs. It defines string complexity by statistically modeling the k-mer count distribution with the parameters: the k-mer length, the context window size and a threshold on complexity. Longdust exhibits high performance on real data and high consistency with existing methods. Availability and implementation: https://github.com/lh3/longdust

q-bio.GN↗

arXiv2025

Understanding and Estimating the Execution Time of Quantum Circuits

Due to the scarcity of quantum computing resources, researchers and developers have very limited access to real quantum computers. Therefore, judicious planning and utilization of quantum computer runtime are essential to ensure smooth execution and completion of projects. Accurate estimation of a quantum circuit's execution time is thus necessary to prevent unexpectedly exceeding the anticipated runtime or the maximum capacity of the quantum computers; it also allows quantum computing platforms to make precisely informed provisioning and prioritization of quantum computing jobs. In this paper, we first study the characteristics of quantum circuits' runtime on simulators and real quantum computers. Then, we introduce an innovative method that employs a graph transformer-based model, utilizing the graph information and global information of quantum circuits to estimate their execution time. We selected a benchmark dataset comprising over 1,510 quantum circuits, initially predicting their execution times on simulators, which yielded promising results with an R-squared value greater than 95%. Subsequently, we applied active learning to select 340 circuit samples with a confidence level of 95% to build and evaluate our approach for the estimation of circuit execution times on quantum computers, achieving an average R-squared value exceeding 90%. Our approach can be integrated into quantum computing platforms to provide an accurate estimation of quantum execution time and be used as a reference for prioritizing quantum execution jobs. In addition, our findings provide insights for quantum program developers to optimize their circuits for reduced execution time.

cs.SE↗

arXiv2025

Energy-Efficient Software Development: A Multi-dimensional Empirical Analysis of Stack Overflow

Energy consumption of software applications has emerged as a critical concern for developers to contemplate in their daily development processes. Previous studies have surveyed a limited number of developers to understand their viewpoints on energy consumption. We complement these studies by analyzing a meticulously curated dataset of 1,193 Stack Overflow (SO) questions concerning energy consumption. These questions capture real-world energy-related challenges in practice. To understand practitioners' perceptions, we investigate the intentions behind these questions, semantic topics, and associated technologies (e.g., programming languages). Our results reveal that: (i) the most prevalent energy consumption topic is about balancing Positioning usage; (ii) efficiently handling data is particularly challenging, with these questions having the longest response times; (iii) practitioners primarily ask questions to understand a concept or API related to energy consumption; and (iv) practitioners are concerned about energy consumption across multiple levels-hardware, operating systems, and programming languages-during energy efficient software development. Our findings raise awareness about energy consumption's impact on software development. We also derive actionable implications for energy optimization at different levels (e.g., optimizing API usage or hardware accesses) during energy-aware software development.

cs.SE↗