SearcharxivSearch

arXiv subjects

Herman Gudjonson

Publications and source records attributed to Herman Gudjonson.

2 recordsLinked to original sources

Bridging the time scales of single-cell and population dynamics

How are granular details of stochastic growth and division of individual cells reflected in smooth deterministic growth of population numbers? We provide an integrated, multiscale perspective of microbial growth dynamics by formulating a data-validated theoretical framework that accounts for observables at both single-cell and population scales. We derive exact analytical complete time-dependent solutions to cell-age distributions and population growth rates as functionals of the underlying interdivision time distributions, for symmetric and asymmetric cell division. These results provide insights into the surprising implications of stochastic single-cell dynamics for population growth. Using our results for asymmetric division, we deduce the time to transition from the reproductively quiescent (swarmer) to replication-competent (stalked) stage of the {\em Caulobacter crescentus} lifecycle. Remarkably, population numbers can spontaneously oscillate with time. We elucidate the physics leading to these population oscillations. For {\em C. crescentus} cells, we show that a simple measurement of the population growth rate, for a given growth condition, is sufficient to characterize the condition-specific cellular unit of time, and thus yields the mean (single-cell) growth and division timescales, fluctuations in cell division times, the cell age distribution, and the quiescence timescale.

q-bio.QM

Monte-Carlo-based electromagnetic modeling of nanoscale structures: accounting for inhomogeneous broadening in polydisperse ensembles

Many experimental systems consist of large ensembles of uncoupled or weakly interacting elements operating as a single whole; this is the case in many experimental systems in nano-optics and plasmonics including colloidal solutions, plasmonic nanoparticles, dielectric resonators, antenna arrays, and others. In such experiments, measurements of the optical spectra of ensembles will differ from measurements of the independent elements even if these elements are designed to be identical as a result of small variations from element to element, known as polydispersity. In particular, sharp spectral features arising from narrow-band resonances will tend to appear broader and can even be washed out completely. Here, we explore this effect of inhomogeneous broadening as it occurs in colloidal nano-polymers comprising self-assembled nanorod chains in solution. Using a technique combining finite-difference time-domain (FDTD) simulations and Monte-Carlo sampling, we predict the inhomogeneously-broadened optical spectra of these colloidal nano-polymers, and observe significant qualitative differences compared to the unbroadened spectra. The approach combining an electromagnetic simulation technique with Monte-Carlo sampling is widely applicable for quantifying the effects of inhomogeneous broadening in a variety of physical systems, including those with many degrees of freedom which are otherwise computationally intractable.

physics.optics