arXiv subjects

Hervé Mohrbach

Publications and source records attributed to Hervé Mohrbach.

14 recordsLinked to original sources

arXiv2018

The Helical Superstructure of Intermediate Filaments

Intermediate filaments are the least explored among the large cytoskeletal elements. We show here that they display conformational anomalies in narrow microfluidic channels. Their unusual behavior can be understood as the consequence of a previously undetected, large scale helically curved superstructure. Confinement in a channel orders the otherwise soft, strongly fluctuating helical filaments and enhances their structural correlations, giving rise to experimentally detectable, strongly oscillating tangent correlation functions. We propose an explanation for the detected intrinsic curving phenomenon - an elastic shape instability that we call autocoiling. The mechanism involves self-induced filament buckling via a surface stress located at the outside of the cross-section. The results agree with ultrastructural findings and rationalize for the commonly observed looped intermediate filament shapes.

cond-mat.soft↗

arXiv2016

Squeezed Helical Elastica

We theoretically study the conformations of a helical semi-flexible filament confined to a flat surface. This squeezed helix exhibits a variety of unexpected shapes resembling circles, waves or spirals depending on the material parameters. We explore the conformation space in detail and show that the shapes can be understood as the mutual elastic interaction of conformational quasi-particles. Our theoretical results are potentially useful to determine the material parameters of such helical filaments in an experimental setting.

physics.bio-ph↗

arXiv2016

Faddeev-Jackiw Quantization of Non-Autonomous Singular Systems

We extend the quantization à la Faddeev-Jackiw for non-autonomous singular systems. This leads to a generalization of the Schrödinger equation for those systems. The method is exemplified by the quantization of the damped harmonic oscillator and the relativistic particle in an external electromagnetic field.

physics.gen-ph↗

arXiv2014

Crunching Biofilament Rings

We discuss a curious example for the collective mechanical behavior of coupled non-linear monomer units entrapped in a circular filament. Within a simple model we elucidate how multistability of monomer units and exponentially large degeneracy of the filament's ground state emerge as a collective feature of the closed filament. Surprisingly, increasing the monomer frustration, i.e., the bending prestrain within the circular filament, leads to a conformational softening of the system. The phenomenon, that we term polymorphic crunching, is discussed and applied to a possible scenario for membrane tube deformation by switchable dynamin or FtsZ filaments. We find an important role of cooperative inter-unit interaction for efficient ring induced membrane fission.

cond-mat.soft↗

arXiv2014

Why Microtubules run in Circles - Mechanical Hysteresis of the Tubulin Lattice

The fate of every eukaryotic cell subtly relies on the exceptional mechanical properties of microtubules. Despite significant efforts, understanding their unusual mechanics remains elusive. One persistent, unresolved mystery is the formation of long-lived arcs and rings, e.g. in kinesin-driven gliding assays. To elucidate their physical origin we develop a model of the inner workings of the microtubule's lattice, based on recent experimental evidence for a conformational switch of the tubulin dimer. We show that the microtubule lattice itself coexists in discrete polymorphic states. Curved states can be induced via a mechanical hysteresis involving torques and forces typical of few molecular motors acting in unison. This lattice switch renders microtubules not only virtually unbreakable under typical cellular forces, but moreover provides them with a tunable response integrating mechanical and chemical stimuli.

cond-mat.soft↗

arXiv2013

Confotronic Dynamics of Tubular Lattices

Tubular lattices are ubiquitous in nature and technology. Microtubules and nanotubes of all kinds act as important pillars of biological cells and the man-made nano-world. We show that when prestress is introduced in such structures, localized conformational quasiparticles emerge and govern the collective shape dynamics of the lattice. When coupled via cooperative interactions these quasiparticles form larger-scale quasipolymer superstructures exhibiting collective dynamic modes and giving rise to a hallmark behavior radically different from semiflexible beams.

cond-mat.soft↗

arXiv2012

Helices at Interfaces

Helically coiled filaments are a frequent motif in nature. In situations commonly encountered in experiments coiled helices are squeezed flat onto two dimensional surfaces. Under such 2-D confinement helices form "squeelices" - peculiar squeezed conformations often resembling looped waves, spirals or circles. Using theory and Monte-Carlo simulations we illuminate here the mechanics and the unusual statistical mechanics of confined helices and show that their fluctuations can be understood in terms of moving and interacting discrete particle-like entities - the "twist-kinks". We show that confined filaments can thermally switch between discrete topological twist quantized states, with some of the states exhibiting dramatically enhanced circularization probability while others displaying surprising hyperflexibility.

cond-mat.soft↗

arXiv2011

Cooperative Lattice Dynamics and Anomalous Fluctuations of Microtubules

Microtubules have been in biophysical focus for several decades. Yet the confusing and mutually contradicting results regarding their elasticity and fluctuations have shed some doubts on their present understanding. In this paper we expose the empirical evidence for the existence of discrete GDP-tubulin fluctuations between a curved and a straight configuration at room temperature as well as for conformational tubulin cooperativity. Guided by a number of experimental findings, we build the case for a novel microtubule model, with the principal result that microtubules can spontaneously form micron size cooperative helical states with unique elastic and dynamic features. The polymorphic dynamics of the microtubule lattice resulting from the tubulin bistability quantitatively explains several experimental puzzles including anomalous scaling of dynamic fluctuations of grafted microtubules, their apparent length-stiffness relation and their remarkably curved-helical appearance in general. We point out that tubulin dimers's multistability and its cooperative switching could participate in important cellular processes, and could in particular lead to efficient mechanochemical signalling along single microtubules.

cond-mat.soft↗

arXiv2011

A Solvable Model for Polymorphic Dynamics of Biofilaments

We investigate an analytically tractable toy model for thermally induced polymorphic dynamics of cooperatively rearranging biofilaments - like microtubules. The proposed 4 -block model, which can be seen as a coarse-grained approximation of the full polymorphic tube model, permits a complete analytical treatment of all thermodynamic properties including correlation functions and angular fourier mode distributions. Due to its mathematical tractability the model straightforwardly leads to some physical insights in recently discussed phenomena like the "length dependent persistence length". We show that a polymorphic filament can disguise itself as a classical worm like chain on small and on large scales and yet display distinct anomalous tell-tale features indicating an inner switching dynamics on intermediate length scales.

cond-mat.soft↗

arXiv2011

Interface-mediated interactions: Entropic forces of curved membranes

Particles embedded in a fluctuating interface experience forces and torques mediated by the deformations and by the thermal fluctuations of the medium. Considering a system of two cylinders bound to a fluid membrane we show that the entropic contribution enhances the curvature-mediated repulsion between the two cylinders. This is contrary to the usual attractive Casimir force in the absence of curvature-mediated interactions. For a large distance between the cylinders, we retrieve the renormalization of the surface tension of a flat membrane due to thermal fluctuations.

cond-mat.soft↗

arXiv2008

Berry Curvature in Graphene: A New Approach

In the present paper we have directly computed the Berry curvature terms relevant for Graphene in the presence of an \textit{inhomogeneous} lattice distortion. We have employed the generalized Foldy Wouthuysen framework, developed by some of us \cite{ber0,ber1,ber2}. We show that a non-constant lattice distortion leads to a valley-orbit coupling which is responsible to a valley-Hall effect. This is similar to the valley-Hall effect induced by an electric field proposed in \cite{niu2} and is the analogue of the spin-Hall effect in semiconductors \cite{MURAKAMI, SINOVA}. Our general expressions for Berry curvature, for the special case of homogeneous distortion, reduce to the previously obtained results \cite{niu2}. We also discuss the Berry phase in the quantization of cyclotron motion.

cond-mat.mes-hall↗

arXiv2008

Appearance of Gauge Fields and Forces beyond the adiabatic approximation

We investigate the origin of quantum geometric phases, gauge fields and forces beyond the adiabatic regime. In particular, we extend the notions of geometric magnetic and electric forces discovered in studies of the Born-Oppenheimer approximation to arbitrary quantum systems described by matrix valued quantum Hamiltonians. The results are illustrated by several physical relevant examples.

hep-th↗

arXiv2007

Semi-classical buckling of stiff polymers

A quantitative theory of the buckling of a worm like chain based on a semi-classical approximation of the partition function is presented. The contribution of thermal fluctuations to the force-extension relation that allows to go beyond the classical Euler buckling is derived in the linear and non-linear regime as well. It is shown that the thermal fluctuations in the nonlinear buckling regime increase the end-to-end distance of the semiflexible rod if it is confined to 2 dimensions as opposed to the 3 dimensional case. Our approach allows a complete physical understanding of buckling in D=2 and in D=3 below and above the Euler transition.

cond-mat.soft↗

arXiv2006

Semiclassical Dynamics of Electrons in Magnetic Bloch Bands: a Hamiltonian Approach

y formally diagonalizing with accuracy $\hbar$ the Hamiltonian of electrons in a crystal subject to electromagnetic perturbations, we resolve the debate on the Hamiltonian nature of semiclassical equations of motion with Berry-phase corrections, and therefore confirm the validity of the Liouville theorem. We show that both the position and momentum operators acquire a Berry-phase dependence, leading to a non-canonical Hamiltonian dynamics. The equations of motion turn out to be identical to the ones previously derived in the context of electron wave-packets dynamics.

cond-mat.other↗