arXiv subjects

Hidetoshi Shimodaira

Publications and source records attributed to Hidetoshi Shimodaira.

At least 37 records · Page 2Linked to original sources

arXiv2024

Block-Diagonal Orthogonal Relation and Matrix Entity for Knowledge Graph Embedding

The primary aim of Knowledge Graph embeddings (KGE) is to learn low-dimensional representations of entities and relations for predicting missing facts. While rotation-based methods like RotatE and QuatE perform well in KGE, they face two challenges: limited model flexibility requiring proportional increases in relation size with entity dimension, and difficulties in generalizing the model for higher-dimensional rotations. To address these issues, we introduce OrthogonalE, a novel KGE model employing matrices for entities and block-diagonal orthogonal matrices with Riemannian optimization for relations. This approach enhances the generality and flexibility of KGE models. The experimental results indicate that our new KGE model, OrthogonalE, is both general and flexible, significantly outperforming state-of-the-art KGE models while substantially reducing the number of relation parameters.

cs.CL↗

arXiv2024

Shimo Lab at "Discharge Me!": Discharge Summarization by Prompt-Driven Concatenation of Electronic Health Record Sections

In this paper, we present our approach to the shared task "Discharge Me!" at the BioNLP Workshop 2024. The primary goal of this task is to reduce the time and effort clinicians spend on writing detailed notes in the electronic health record (EHR). Participants develop a pipeline to generate the "Brief Hospital Course" and "Discharge Instructions" sections from the EHR. Our approach involves a first step of extracting the relevant sections from the EHR. We then add explanatory prompts to these sections and concatenate them with separate tokens to create the input text. To train a text generation model, we perform LoRA fine-tuning on the ClinicalT5-large model. On the final test data, our approach achieved a ROUGE-1 score of $0.394$, which is comparable to the top solutions.

cs.CL↗

arXiv2024

Knowledge Sanitization of Large Language Models

We explore a knowledge sanitization approach to mitigate the privacy concerns associated with large language models (LLMs). LLMs trained on a large corpus of Web data can memorize and potentially reveal sensitive or confidential information, raising critical security concerns. Our technique efficiently fine-tunes these models using the Low-Rank Adaptation (LoRA) method, prompting them to generate harmless responses such as ``I don't know'' when queried about specific information. Experimental results in a closed-book question-answering task show that our straightforward method not only minimizes particular knowledge leakage but also preserves the overall performance of LLMs. These two advantages strengthen the defense against extraction attacks and reduces the emission of harmful content such as hallucinations.

cs.CL↗

arXiv2024

3D Rotation and Translation for Hyperbolic Knowledge Graph Embedding

The main objective of Knowledge Graph (KG) embeddings is to learn low-dimensional representations of entities and relations, enabling the prediction of missing facts. A significant challenge in achieving better KG embeddings lies in capturing relation patterns, including symmetry, antisymmetry, inversion, commutative composition, non-commutative composition, hierarchy, and multiplicity. This study introduces a novel model called 3H-TH (3D Rotation and Translation in Hyperbolic space) that captures these relation patterns simultaneously. In contrast, previous attempts have not achieved satisfactory performance across all the mentioned properties at the same time. The experimental results demonstrate that the new model outperforms existing state-of-the-art models in terms of accuracy, hierarchy property, and other relation patterns in low-dimensional space, meanwhile performing similarly in high-dimensional space.

cs.CL↗

arXiv2023

Improving word mover's distance by leveraging self-attention matrix

Measuring the semantic similarity between two sentences is still an important task. The word mover's distance (WMD) computes the similarity via the optimal alignment between the sets of word embeddings. However, WMD does not utilize word order, making it challenging to distinguish sentences with significant overlaps of similar words, even if they are semantically very different. Here, we attempt to improve WMD by incorporating the sentence structure represented by BERT's self-attention matrix (SAM). The proposed method is based on the Fused Gromov-Wasserstein distance, which simultaneously considers the similarity of the word embedding and the SAM for calculating the optimal transport between two sentences. Experiments demonstrate the proposed method enhances WMD and its variants in paraphrase identification with near-equivalent performance in semantic textual similarity. Our code is available at \url{https://github.com/ymgw55/WSMD}.

cs.CL↗

arXiv2023

Norm of Word Embedding Encodes Information Gain

Distributed representations of words encode lexical semantic information, but what type of information is encoded and how? Focusing on the skip-gram with negative-sampling method, we found that the squared norm of static word embedding encodes the information gain conveyed by the word; the information gain is defined by the Kullback-Leibler divergence of the co-occurrence distribution of the word to the unigram distribution. Our findings are explained by the theoretical framework of the exponential family of probability distributions and confirmed through precise experiments that remove spurious correlations arising from word frequency. This theory also extends to contextualized word embeddings in language models or any neural networks with the softmax output layer. We also demonstrate that both the KL divergence and the squared norm of embedding provide a useful metric of the informativeness of a word in tasks such as keyword extraction, proper-noun discrimination, and hypernym discrimination.

cs.CL↗

arXiv2023

Discovering Universal Geometry in Embeddings with ICA

This study utilizes Independent Component Analysis (ICA) to unveil a consistent semantic structure within embeddings of words or images. Our approach extracts independent semantic components from the embeddings of a pre-trained model by leveraging anisotropic information that remains after the whitening process in Principal Component Analysis (PCA). We demonstrate that each embedding can be expressed as a composition of a few intrinsic interpretable axes and that these semantic axes remain consistent across different languages, algorithms, and modalities. The discovery of a universal semantic structure in the geometric patterns of embeddings enhances our understanding of the representations in embeddings.

cs.CL↗

arXiv2022

Revisiting Additive Compositionality: AND, OR and NOT Operations with Word Embeddings

It is well-known that typical word embedding methods such as Word2Vec and GloVe have the property that the meaning can be composed by adding up the embeddings (additive compositionality). Several theories have been proposed to explain additive compositionality, but the following questions remain unanswered: (Q1) The assumptions of those theories do not hold for the practical word embedding. (Q2) Ordinary additive compositionality can be seen as an AND operation of word meanings, but it is not well understood how other operations, such as OR and NOT, can be computed by the embeddings. We address these issues by the idea of frequency-weighted centering at its core. This paper proposes a post-processing method for bridging the gap between practical word embedding and the assumption of theory about additive compositionality as an answer to (Q1). It also gives a method for taking OR or NOT of the meaning by linear operation of word embedding as an answer to (Q2). Moreover, we confirm experimentally that the accuracy of AND operation, i.e., the ordinary additive compositionality, can be improved by our post-processing method (3.5x improvement in top-100 accuracy) and that OR and NOT operations can be performed correctly.

cs.CL↗

arXiv2022

Improving Nonparametric Classification via Local Radial Regression with an Application to Stock Prediction

For supervised classification problems, this paper considers estimating the query's label probability through local regression using observed covariates. Well-known nonparametric kernel smoother and $k$-nearest neighbor ($k$-NN) estimator, which take label average over a ball around the query, are consistent but asymptotically biased particularly for a large radius of the ball. To eradicate such bias, local polynomial regression (LPoR) and multiscale $k$-NN (MS-$k$-NN) learn the bias term by local regression around the query and extrapolate it to the query itself. However, their theoretical optimality has been shown for the limit of the infinite number of training samples. For correcting the asymptotic bias with fewer observations, this paper proposes a \emph{local radial regression (LRR)} and its logistic regression variant called \emph{local radial logistic regression~(LRLR)}, by combining the advantages of LPoR and MS-$k$-NN. The idea is quite simple: we fit the local regression to observed labels by taking only the radial distance as the explanatory variable and then extrapolate the estimated label probability to zero distance. The usefulness of the proposed method is shown theoretically and experimentally. We prove the convergence rate of the $L^2$ risk for LRR with reference to MS-$k$-NN, and our numerical experiments, including real-world datasets of daily stock indices, demonstrate that LRLR outperforms LPoR and MS-$k$-NN.

stat.ML↗

arXiv2022

Selective inference after feature selection via multiscale bootstrap

It is common to show the confidence intervals or $p$-values of selected features, or predictor variables in regression, but they often involve selection bias. The selective inference approach solves this bias by conditioning on the selection event. Most existing studies of selective inference consider a specific algorithm, such as Lasso, for feature selection, and thus they have difficulties in handling more complicated algorithms. Moreover, existing studies often consider unnecessarily restrictive events, leading to over-conditioning and lower statistical power. Our novel and widely-applicable resampling method via multiscale bootstrap addresses these issues to compute an approximately unbiased selective $p$-value for the selected features. As a simplification of the proposed method, we also develop a simpler method via the classical bootstrap. We prove that the $p$-value computed by our multiscale bootstrap method is more accurate than the classical bootstrap method. Furthermore, numerical experiments demonstrate that our algorithm works well even for more complicated feature selection methods such as non-convex regularization.

stat.ME↗

arXiv2021

Nonparametric estimation of the preferential attachment function from one network snapshot

Preferential attachment is commonly invoked to explain the emergence of those heavy-tailed degree distributions characteristic of growing network representations of diverse real-world phenomena. Experimentally confirming this hypothesis in real-world growing networks is an important frontier in network science research. Conventional preferential attachment estimation methods require that a growing network be observed across at least two snapshots in time. Numerous publicly available growing network datasets are, however, only available as single snapshots, leaving the applied network scientist with no means of measuring preferential attachment in these cases. We propose a nonparametric method, called PAFit-oneshot, for estimating preferential attachment in a growing network from one snapshot. PAFit-oneshot corrects for a previously unnoticed bias that arises when estimating preferential attachment values only for degrees observed in the single snapshot. Our work provides a means of measuring preferential attachment in a large number of publicly available one-snapshot networks. As a demonstration, we estimated preferential attachment in three such networks, and found sublinear preferential attachment in all cases. PAFit-oneshot is implemented in the R package PAFit.

cs.SI↗

arXiv2020

Extrapolation Towards Imaginary $0$-Nearest Neighbour and Its Improved Convergence Rate

$k$-nearest neighbour ($k$-NN) is one of the simplest and most widely-used methods for supervised classification, that predicts a query's label by taking weighted ratio of observed labels of $k$ objects nearest to the query. The weights and the parameter $k \in \mathbb{N}$ regulate its bias-variance trade-off, and the trade-off implicitly affects the convergence rate of the excess risk for the $k$-NN classifier; several existing studies considered selecting optimal $k$ and weights to obtain faster convergence rate. Whereas $k$-NN with non-negative weights has been developed widely, it was also proved that negative weights are essential for eradicating the bias terms and attaining optimal convergence rate. In this paper, we propose a novel multiscale $k$-NN (MS-$k$-NN), that extrapolates unweighted $k$-NN estimators from several $k \ge 1$ values to $k=0$, thus giving an imaginary 0-NN estimator. Our method implicitly computes optimal real-valued weights that are adaptive to the query and its neighbour points. We theoretically prove that the MS-$k$-NN attains the improved rate, which coincides with the existing optimal rate under some conditions.

stat.ML↗

arXiv2020

Stochastic Neighbor Embedding of Multimodal Relational Data for Image-Text Simultaneous Visualization

Multimodal relational data analysis has become of increasing importance in recent years, for exploring across different domains of data, such as images and their text tags obtained from social networking services (e.g., Flickr). A variety of data analysis methods have been developed for visualization; to give an example, t-Stochastic Neighbor Embedding (t-SNE) computes low-dimensional feature vectors so that their similarities keep those of the observed data vectors. However, t-SNE is designed only for a single domain of data but not for multimodal data; this paper aims at visualizing multimodal relational data consisting of data vectors in multiple domains with relations across these vectors. By extending t-SNE, we herein propose Multimodal Relational Stochastic Neighbor Embedding (MR-SNE), that (1) first computes augmented relations, where we observe the relations across domains and compute those within each of domains via the observed data vectors, and (2) jointly embeds the augmented relations to a low-dimensional space. Through visualization of Flickr and Animal with Attributes 2 datasets, proposed MR-SNE is compared with other graph embedding-based approaches; MR-SNE demonstrates the promising performance.

cs.LG↗

arXiv2020

Hyperlink Regression via Bregman Divergence

A collection of $U \: (\in \mathbb{N})$ data vectors is called a $U$-tuple, and the association strength among the vectors of a tuple is termed as the \emph{hyperlink weight}, that is assumed to be symmetric with respect to permutation of the entries in the index. We herein propose Bregman hyperlink regression (BHLR), which learns a user-specified symmetric similarity function such that it predicts the tuple's hyperlink weight from data vectors stored in the $U$-tuple. BHLR is a simple and general framework for hyper-relational learning, that minimizes Bregman-divergence (BD) between the hyperlink weights and estimated similarities defined for the corresponding tuples; BHLR encompasses various existing methods, such as logistic regression ($U=1$), Poisson regression ($U=1$), link prediction ($U=2$), and those for representation learning, such as graph embedding ($U=2$), matrix factorization ($U=2$), tensor factorization ($U \geq 2$), and their variants equipped with arbitrary BD. Nonlinear functions (e.g., neural networks), can be employed for the similarity functions. However, there are theoretical challenges such that some of different tuples of BHLR may share data vectors therein, unlike the i.i.d. setting of classical regression. We address these theoretical issues, and proved that BHLR equipped with arbitrary BD and $U \in \mathbb{N}$ is (P-1) statistically consistent, that is, it asymptotically recovers the underlying true conditional expectation of hyperlink weights given data vectors, and (P-2) computationally tractable, that is, it is efficiently computed by stochastic optimization algorithms using a novel generalized minibatch sampling procedure for hyper-relational data. Consequently, theoretical guarantees for BHLR including several existing methods, that have been examined experimentally, are provided in a unified manner.

cs.SI↗

arXiv2020

More Powerful Selective Kernel Tests for Feature Selection

Refining one's hypotheses in the light of data is a common scientific practice; however, the dependency on the data introduces selection bias and can lead to specious statistical analysis. An approach for addressing this is via conditioning on the selection procedure to account for how we have used the data to generate our hypotheses, and prevent information to be used again after selection. Many selective inference (a.k.a. post-selection inference) algorithms typically take this approach but will "over-condition" for sake of tractability. While this practice yields well calibrated statistic tests with controlled false positive rates (FPR), it can incur a major loss in power. In our work, we extend two recent proposals for selecting features using the Maximum Mean Discrepancy and Hilbert Schmidt Independence Criterion to condition on the minimal conditioning event. We show how recent advances in multiscale bootstrap makes conditioning on the minimal selection event possible and demonstrate our proposal over a range of synthetic and real world experiments. Our results show that our proposed test is indeed more powerful in most scenarios.

cs.LG↗

arXiv2019

Joint Estimation of the Non-parametric Transitivity and Preferential Attachment Functions in Scientific Co-authorship Networks

We propose a statistical method to estimate simultaneously the non-parametric transitivity and preferential attachment functions in a growing network, in contrast to conventional methods that either estimate each function in isolation or assume some functional form for them. Our model is shown to be a good fit to two real-world co-authorship networks and be able to bring to light intriguing details of the preferential attachment and transitivity phenomena that would be unavailable under traditional methods. We also introduce a method to quantify the amount of contributions of those phenomena in the growth process of a network based on the probabilistic dynamic process induced by the model formula. Applying this method, we found that transitivity dominated PA in both co-authorship networks. This suggests the importance of indirect relations in scientific creative processes. The proposed methods are implemented in the R package FoFaF.

physics.soc-ph↗

arXiv2019

Representation Learning with Weighted Inner Product for Universal Approximation of General Similarities

We propose $\textit{weighted inner product similarity}$ (WIPS) for neural network-based graph embedding. In addition to the parameters of neural networks, we optimize the weights of the inner product by allowing positive and negative values. Despite its simplicity, WIPS can approximate arbitrary general similarities including positive definite, conditionally positive definite, and indefinite kernels. WIPS is free from similarity model selection, since it can learn any similarity models such as cosine similarity, negative Poincaré distance and negative Wasserstein distance. Our experiments show that the proposed method can learn high-quality distributed representations of nodes from real datasets, leading to an accurate approximation of similarities as well as high performance in inductive tasks.

cs.LG↗

arXiv2019

Segmentation-free Compositional $n$-gram Embedding

We propose a new type of representation learning method that models words, phrases and sentences seamlessly. Our method does not depend on word segmentation and any human-annotated resources (e.g., word dictionaries), yet it is very effective for noisy corpora written in unsegmented languages such as Chinese and Japanese. The main idea of our method is to ignore word boundaries completely (i.e., segmentation-free), and construct representations for all character $n$-grams in a raw corpus with embeddings of compositional sub-$n$-grams. Although the idea is simple, our experiments on various benchmarks and real-world datasets show the efficacy of our proposal.

cs.CL↗