Searcharxiv⌕ Search

arXiv subjects

Holger Stark

Publications and source records attributed to Holger Stark.

At least 91 records · Page 5Linked to original sources
arXiv2012

Periodic and Quasiperiodic Motion of an Elongated Microswimmer in Poiseuille Flow

We study the dynamics of a prolate spheroidal microswimmer in Poiseuille flow for different flow geometries. When moving between two parallel plates or in a cylindrical microchannel, the swimmer performs either periodic swinging or periodic tumbling motion. Although the trajectories of spherical and elongated swimmers are qualitatively similar, the swinging and tumbling frequency strongly depends on the aspect ratio of the swimmer. In channels with reduced symmetry the swimmers perform quasiperiodic motion which we demonstrate explicitely for swimming in a channel with elliptical cross section.

cond-mat.soft↗
arXiv2012

Diffusive transport of light in three-dimensional disordered Voronoi structures

The origin of diffusive transport of light in dry foams is still under debate. In this paper, we consider the random walks of photons as they are reflected or transmitted by liquid films according to the rules of ray optics. The foams are approximately modeled by three-dimensional Voronoi tessellations with varying degree of disorder. We study two cases: a constant intensity reflectance and the reflectance of thin films. Especially in the second case, we find that in the experimentally important regime for the film thicknesses, the transport-mean-free path does not significantly depend on the topological and geometrical disorder of the Voronoi foams including the periodic Kelvin foam. This may indicate that the detailed structure of foams is not crucial for understanding the diffusive transport of light. Furthermore, our theoretical values for transport-mean-free path fall in the same range as the experimental values observed in dry foams. One can therefore argue that liquid films contribute substantially to the diffusive transport of light in {dry} foams.

cond-mat.soft↗
arXiv2012

Motor-Driven Bacterial Flagella and Buckling Instabilities

Many types of bacteria swim by rotating a bundle of helical filaments also called flagella. Each filament is driven by a rotary motor and a very flexible hook transmits the motor torque to the filament. We model it by discretizing Kirchhoff's elastic-rod theory and develop a coarse-grained approach for driving the helical filament by a motor torque. A rotating flagellum generates a thrust force, which pushes the cell body forward and which increases with the motor torque. We fix the rotating flagellum in space and show that it buckles under the thrust force at a critical motor torque. Buckling becomes visible as a supercritical Hopf bifurcation in the thrust force. A second buckling transition occurs at an even higher motor torque. We attach the flagellum to a spherical cell body and also observe the first buckling transition during locomotion. By changing the size of the cell body, we vary the necessary thrust force and thereby obtain a characteristic relation between the critical thrust force and motor torque. We present a sophisticated analytical model for the buckling transition based on a helical rod which quantitatively reproduces the critical force-torque relation. Real values for motor torque, cell body size, and the geometry of the helical filament suggest that buckling should occur in single bacterial flagella. We also find that the orientation of pulling flagella along the driving torque is not stable and comment on the biological relevance for marine bacteria.

physics.bio-ph↗
arXiv2012

Nonlinear dynamics of a microswimmer in Poiseuille flow

We study the three-dimensional dynamics of a spherical microswimmer in cylindrical Poiseuille flow which can be mapped onto a Hamiltonian system. Swinging and tumbling trajectories are identified. In 2D they are equivalent to oscillating and circling solutions of a mathematical pendulum. Hydrodynamic interactions between the swimmer and confining channel walls lead to dissipative dynamics and result in stable trajectories, different for pullers and pushers. We demonstrate this behavior in the dipole approximation of the swimmer and with simulations using the method of multi-particle collision dynamics.

cond-mat.soft↗
arXiv2010

Metachronal waves in a chain of rowers with hydrodynamic interactions

Filaments on the surface of a microorganism such as Paramecium or Ophalina beat highly synchronized and form so-called metachronal waves that travel along the surfaces. In order to study under what principal conditions these waves form, we introduce a chain of beads, called rowers, each periodically driven by an external force on a straight line segment. To implement hydrodynamic interactions between the beads, they are considered point-like. Two beads synchronize in antiphase or in phase depending on the positive or negative curvature of their driving-force potential. Concentrating on in-phase synchronizing rowers, we find that they display only transient synchronization in a bulk fluid. On the other hand, metachronal waves with wavelengths of 7-10 rower distances emerge, when we restrict the range of hydrodynamic interactions either artificially to nearest neighbors or by the presence of a bounding surface as in any relevant biological system.

physics.bio-ph↗
arXiv2010

Force-extension curves of bacterial flagella

Bacterial flagella assume different helical shapes during the tumbling phase of a bacterium but also in response to varying environmental conditions. Force-extension measurements by Darnton and Berg explicitly demonstrate a transformation from the coiled to the normal helical state [N.C. Darnton and H.C. Berg, Biophys. J. {92}, 2230 (2007)]. We here develop an elastic model for the flagellum based on Kirchhoff's theory of an elastic rod that describes such a polymorphic transformation and use resistive force theory to couple the flagellum to the aqueous environment. We present Brownian dynamics simulations that quantitatively reproduce the force-extension curves and study how the ratio $Γ$ of torsional to bending rigidity and the extensional rate influence the response of the flagellum. An upper bound for $Γ$ is given. Using clamped flagella, we show in an adiabatic approximation that the mean extension, where a local coiled-to-normal transition occurs first, depends on the logarithm of the extensional rate.

physics.bio-ph↗
arXiv2010

Archimedean-like colloidal tilings on substrates with decagonal and tetradecagonal symmetry

Two-dimensional colloidal suspensions subject to laser interference patterns with decagonal symmetry can form an Archimedean-like tiling phase where rows of squares and triangles order aperiodically along one direction [J. Mikhael et al., Nature 454, 501 (2008)]. In experiments as well as in Monte-Carlo and Brownian dynamics simulations, we identify a similar phase when the laser field possesses tetradecagonal symmetry. We characterize the structure of both Archimedean-like tilings in detail and point out how the tilings differ from each other. Furthermore, we also estimate specific particle densities where the Archimedean-like tiling phases occur. Finally, using Brownian dynamics simulations we demonstrate how phasonic distortions of the decagonal laser field influence the Archimedean-like tiling. In particular, the domain size of the tiling can be enlarged by phasonic drifts and constant gradients in the phasonic displacement. We demonstrate that the latter occurs when the interfering laser beams are not adjusted properly.

cond-mat.soft↗
arXiv2008

Fluid transport at low Reynolds number with magnetically actuated artificial cilia

By numerical modeling we investigate fluid transport in low-Reynolds-number flow achieved with a special elastic filament or artifical cilium attached to a planar surface. The filament is made of superparamagnetic particles linked together by DNA double strands. An external magnetic field induces dipolar interactions between the beads of the filament which provides a convenient way of actuating the cilium in a well-controlled manner. The filament has recently been used to successfully construct the first artificial micro-swimmer [R. Dreyfus at al., Nature 437, 862 (2005)]. In our numerical study we introduce a measure, which we call pumping performance, to quantify the fluid transport induced by the magnetically actuated cilium and identify an optimum stroke pattern of the filament. It consists of a slow transport stroke and a fast recovery stroke. Our detailed parameter study also reveals that for sufficiently large magnetic fields the artificial cilium is mainly governed by the Mason number that compares frictional to magnetic forces. Initial studies on multi-cilia systems show that the pumping performance is very sensitive to the imposed phase lag between neighboring cilia, i.e., to the details of the initiated metachronal wave.

cond-mat.soft↗
arXiv2008

Numerical Study of a Microscopic Artificial Swimmer

We present a detailed numerical study of a microscopic artificial swimmer realized recently by Dreyfus et al. in experiments [R. Dreyfus et al., Nature 437, 862 (2005)]. It consists of an elastic filament composed of superparamagnetic particles that are linked together by DNA strands. Attached to a load particle, the resulting swimmer is actuated by an oscillating external magnetic field so that it performs a non-reciprocal motion in order to move forward. We model the superparamagnetic filament by a bead-spring configuration that resists bending like a rigid rod and whose beads experience friction with the surrounding fluid and hydrodynamic interactions with each other. We show that, aside from finite-size effects, its dynamics is governed by the dimensionless sperm number, the magnitude of the magnetic field, and the angular amplitude of the field's oscillating direction. Then we study the mean velocity and the efficiency of the swimmer as a function of these parameters and the size of the load particle. In particular, we clarify that the real velocity of the swimmer is influenced by two main factors, namely the shape of the beating filament (determined by the sperm number and the magnetic-field strength) and the oscillation frequency. Furthermore, the load size influences the performance of the swimmer and has to be chosen as a compromise between the largest swimming velocity and the best efficiency. Finally, we demonstrate that the direction of the swimming velocity changes in a symmetry-breaking transition when the angular amplitude of the field's oscillating direction is increased, in agreement with experiments.

cond-mat.soft↗
arXiv2005

Superdiffusion in a Honeycomb Billiard

We investigate particle transport in the honeycomb billiard that consists of connected channels placed on the edges of a honeycomb structure. The spreading of particles is superdiffusive due to the existence of ballistic trajectories which we term perfect paths. Simulations give a time exponent of 1.72 for the mean square displacement and a starlike, i.e., anisotropic particle distribution. We present an analytical treatment based on the formalism of continuous-time random walks and explain both the time exponent and the anisotropic distribution. In billiards with randomly distributed channels, conventional diffusion is always observed in the long-time limit, although for small disorder transient superdiffusional behavior exists. Our simulation results are again supported by an analytical analysis.

cond-mat.stat-mech↗
arXiv2005

Rotational Diffusion in a Chain of Particles

We study the coupled rotational diffusion in a two-particle chain on the basis of a Smoluchowski equation and calculate time-correlation functions that are measurable in an experiment. This might be used to explore hydrodynamic interactions in the limit where lubrication theory is valid.

cond-mat.soft↗
arXiv2005

Photon Channelling in Foams

Experiments by Gittings, Bandyopadhyay, and Durian [Europhys. Lett.\ \textbf{65}, 414 (2004)] demonstrate that light possesses a higher probability to propagate in the liquid phase of a foam due to total reflection. The authors term this observation photon channelling which we investigate in this article theoretically. We first derive a central relation in the work of Gitting {\em et al.} without any free parameters. It links the photon's path-length fraction $f$ in the liquid phase to the liquid fraction $ε$. We then construct two-dimensional Voronoi foams, replace the cell edges by channels to represent the liquid films and simulate photon paths according to the laws of ray optics using transmission and reflection coefficients from Fresnel's formulas. In an exact honeycomb foam, the photons show superdiffusive behavior. It becomes diffusive as soon as disorder is introduced into the foams. The dependence of the diffusion constant on channel width and refractive index is explained by a one-dimensional random-walk model. It contains a photon channelling state that is crucial for the understanding of the numerical results. At the end, we shortly comment on the observation that photon channelling only occurs in a finite range of $ε$.

cond-mat.soft↗
arXiv2005

Surmounting Barriers: The Benefit of Hydrodynamic Interactions

We experimentally and theoretically investigate the collective behavior of three colloidal particles that are driven by a constant force along a toroidal trap. Due to hydrodynamic interactions, a characteristic limit cycle is observed. When we additionally apply a periodic sawtooth potential, we find a novel caterpillar-like motional sequence that is dominated by hydrodynamic interactions and promotes the surmounting of potential barriers by the particles.

cond-mat.soft↗
arXiv2004

Circling particles and drafting in optical vortices

Particles suspended in a viscous fluid circle in optical vortices generated by holographic optical-tweezer techniques [Curtis J E and Grier D G 2003 Phys. Rev. Lett. 90 133901]. We model this system and show that hydrodynamic interactions between the circling particles determine their collective motion. We perform a linear-stability analysis to investigate the stability of regular particle clusters and illustrate the limit cycle to which the unstable modes converge. We clarify that drafting of particle doublets is essential for the understanding of the limit cycle.

cond-mat.soft↗
arXiv2004

Quasicrystalline Order in Binary Dipolar Systems

Motivated by recent experimental findings, we investigate the possible occurrence and characteristics of quasicrystalline order in two-dimensional mixtures of point dipoles with two sorts of dipole moments. Despite the fact that the dipolar interaction potential does not exhibit an intrinsic length scale and cannot be tuned a priori to support the formation of quasicrystalline order, we find that configurations with long--range quasicrystallinity yield minima in the potential energy surface of the many particle system. These configurations emanate from an ideal or perturbed ideal decoration of a binary tiling by steepest descent relaxation. Ground state energy calculations of alternative ordered states and parallel tempering Monte-Carlo simulations reveal that the quasicrystalline configurations do not correspond to a thermodynamically stable state. On the other hand, steepest descent relaxations and conventional Monte-Carlo simulations suggest that they are rather robust against fluctuations. Local quasicrystalline order in the disordered equilibrium states can be strong.

cond-mat.other↗
arXiv2004

Hydrodynamic coupling of two rotating spheres trapped in harmonic potentials

We theoretically study in detail the hydrodynamic coupling of two equal-sized colloidal spheres at low Reynolds numbers assuming the particles to be harmonically trapped with respect to both their positions and orientations. By taking into account the rotational motion, we obtain a rich spectrum of collective eigen modes whose properties we determine on the basis of pure symmetry arguments. Extending recent investigations on translational correlations [J.-C. Meiners and S. R. Quake, Phys. Rev. Lett. 82, 2211 (1999)], we derive the complete set of auto- and cross-correlation functions emphasizing the coupling of rotation to translation which we illustrate in a few examples. An important feature of our system is the self-coupling of translation and rotation of one particle mediated by the neighboring particle that is clearly visible in the appropriate auto-correlation function. This coupling is a higher-order effect and therefore not included in the widely used Rotne-Prager approximation for the hydrodynamic mobilities.

cond-mat.soft↗
arXiv2003

Interaction and flocculation of spherical colloids wetted by a surface-induced corona of paranematic order

Particles dispersed in a liquid crystal above the nematic-isotropic phase transition are wetted by a surface-induced corona of paranematic order. Such coronas give rise to pronounced two-particle interactions. In this article, we report details on the analytical and numerical study of these interactions published recently [Phys. Rev. Lett. 86, 3915 (2001)]. We especially demonstrate how for large particle separations the asymptotic form of a Yukawa potential arises. We show that the Yukawa potential is a surprisingly good description for the two-particle interactions down to distances of the order of the nematic coherence length. Based on this fact, we extend earlier studies on a temperature induced flocculation transition in electrostatically stabilized colloidal dispersions [Phys. Rev. E 61, 2831 (2000)]. We employ the Yukawa potential to establish a flocculation diagram for a much larger range of the electrostatic parameters, namely the surface charge density and the Debye screening length. As a new feature, a kinetically stabilized dispersion close to the nematic-isotropic phase transition is found.

cond-mat.soft↗