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Hong Cheng

Publications and source records attributed to Hong Cheng.

At least 37 records · Page 2Linked to original sources
arXiv2026

ReSum: Unlocking Long-Horizon Search Intelligence via Context Summarization

Large Language Model (LLM)-based web agents excel at knowledge-intensive tasks but face a fundamental conflict between the need for extensive exploration and the constraints of limited context windows. Current solutions typically rely on architectural modifications, e.g., internal memory tokens, which break compatibility with pre-existing agents and necessitate costly end-to-end retraining. To overcome these limitations, we introduce ReSum, a lightweight, plug-and-play paradigm that enables unbounded exploration by periodically invoking an external tool to condense interaction histories into compact summaries. Although this paradigm functions without training, standard agents are not inherently aligned to reason over such compressed contexts. To bridge this gap, we propose ReSum-GRPO, which adapts Group Relative Policy Optimization (GRPO) via advantage broadcasting to propagate final rewards across segmented trajectories, enabling credit assignments over long-horizons. Extensive experiments show that ReSum achieves a 4.5% improvement over ReAct in training-free settings, with ReSum-GRPO yielding a further 8.2% gain. Notably, with only 1K training samples, a ReSum-enhanced 30B agent achieves competitive performance with leading open-source models, showing ReSum's effectiveness.

cs.CL↗
arXiv2026

Lingshu-Cell: A generative cellular world model for transcriptome modeling toward virtual cells

Modeling cellular states and predicting their responses to perturbations are central challenges in computational biology and the development of virtual cells. Existing foundation models for single-cell transcriptomics provide powerful static representations, but they do not explicitly model the distribution of cellular states for generative simulation. Here, we introduce Lingshu-Cell, a masked discrete diffusion model that learns transcriptomic state distributions and supports conditional simulation under perturbation. By operating directly in a discrete token space that is compatible with the sparse, non-sequential nature of single-cell transcriptomic data, Lingshu-Cell captures complex transcriptome-wide expression dependencies across approximately 18,000 genes without relying on prior gene selection, such as filtering by high variability or ranking by expression level. Across diverse tissues and species, Lingshu-Cell accurately reproduces transcriptomic distributions, marker-gene expression patterns and cell-subtype proportions, demonstrating its ability to capture complex cellular heterogeneity. Moreover, by jointly embedding cell type or donor identity with perturbation, Lingshu-Cell can predict whole-transcriptome expression changes for novel combinations of identity and perturbation. It achieves leading performance on the Virtual Cell Challenge H1 genetic perturbation benchmark and in predicting cytokine-induced responses in human PBMCs. Together, these results establish Lingshu-Cell as a flexible cellular world model for in silico simulation of cell states and perturbation responses, laying the foundation for a new paradigm in biological discovery and perturbation screening.

q-bio.QM↗
arXiv2026

Demystifying Reinforcement Learning for Long-Horizon Tool-Using Agents: A Comprehensive Recipe

Reinforcement Learning (RL) is essential for evolving Large Language Models (LLMs) into autonomous agents capable of long-horizon planning, yet a practical recipe for scaling RL in complex, multi-turn environments remains elusive. This paper presents a systematic empirical study using TravelPlanner, a challenging testbed requiring tool orchestration to satisfy multifaceted constraints. We decompose the agentic RL design space along 5 axes: reward shaping, model scaling, data composition, algorithm selection, and environmental stability. Our controlled experiments yield 7 key takeaways, e.g., (1) reward and algorithm choices are scale-dependent as smaller models benefit from staged rewards and enhanced exploration, whereas larger models converge efficiently with simpler dense rewards, (2) ~ 1K training samples with a balanced difficulty mixture mark a sweet spot for both in-domain and out-of-domain performance, and (3) environmental stability is critical to prevent policy degradation. Based on our distilled recipe, our RL-trained models achieve state-of-the-art performance on TravelPlanner, significantly outperforming leading LLMs.

cs.LG↗
arXiv2026

AGCD: Agent-Guided Cross-Modal Decoding for Weather Forecasting

Accurate weather forecasting is more than grid-wise regression: it must preserve coherent synoptic structures and physical consistency of meteorological fields, especially under autoregressive rollouts where small one-step errors can amplify into structural bias. Existing physics-priors approaches typically impose global, once-for-all constraints via architectures, regularization, or NWP coupling, offering limited state-adaptive and sample-specific controllability at deployment. To bridge this gap, we propose Agent-Guided Cross-modal Decoding (AGCD), a plug-and-play decoding-time prior-injection paradigm that derives state-conditioned physics-priors from the current multivariate atmosphere and injects them into forecasters in a controllable and reusable way. Specifically, We design a multi-agent meteorological narration pipeline to generate state-conditioned physics-priors, utilizing MLLMs to extract various meteorological elements effectively. To effectively apply the priors, AGCD further introduce cross-modal region interaction decoding that performs region-aware multi-scale tokenization and efficient physics-priors injection to refine visual features without changing the backbone interface. Experiments on WeatherBench demonstrate consistent gains for 6-hour forecasting across two resolutions (5.625 degree and 1.40625 degree) and diverse backbones (generic and weather-specialized), including strictly causal 48-hour autoregressive rollouts that reduce early-stage error accumulation and improve long-horizon stability.

cs.AI↗
arXiv2026

TianQuan-S2S: A Subseasonal-to-Seasonal Global Weather Model via Incorporate Climatology State

Accurate Subseasonal-to-Seasonal (S2S) forecasting is vital for decision-making in agriculture, energy production, and emergency management. However, it remains a challenging and underexplored problem due to the chaotic nature of the weather system. Recent data-driven studies have shown promising results, but their performance is limited by the inadequate incorporation of climate states and a model tendency to degrade, progressively losing fine-scale details and yielding over-smoothed forecasts. To overcome these limitations, we propose TianQuan-S2S, a global S2S forecasting model that integrates initial weather states with climatological means via incorporating climatology into patch embedding and enhancing variability capture through an uncertainty-augmented Transformer. Extensive experiments on the Earth Reanalysis 5 (ERA5) reanalysis dataset demonstrate that our model yields a significant improvement in both deterministic and ensemble forecasting over the climatology mean, traditional numerical methods, and data-driven models. Ablation studies empirically show the effectiveness of our model designs. Remarkably, our model outperforms skillful numerical ECMWF-S2S and advanced data-driven Fuxi-S2S in key meteorological variables. The code implementation can be found in https://github.com/zhangminglang42/TianQuan.

cs.LG↗
arXiv2026

Evaluating Progress in Graph Foundation Models: A Comprehensive Benchmark and New Insights

Graph foundation models (GFM) aim to acquire transferable knowledge by pre-training on diverse graphs, which can be adapted to various downstream tasks. However, domain shift in graphs is inherently two-dimensional: graphs differ not only in what they describe (topic domains) but also in how they are represented (format domains). Most existing GFM benchmarks vary only topic domains, thereby obscuring how knowledge transfers across both dimensions. We present a new benchmark that jointly evaluates topic and format gaps across the full GFM pipeline, including multi-domain self-supervised pre-training and few-shot downstream adaptation, and provides a timely evaluation of recent GFMs in the rapidly evolving landscape. Our protocol enables controlled assessment in four settings: (i) pre-training on diverse topics and formats, while adapting to unseen downstream datasets; (ii) same pre-training as in (i), while adapting to seen datasets; (iii) pre-training on a single topic domain, while adapting to other topics; (iv) pre-training on a base format, while adapting to other formats. This two-axis evaluation disentangles semantic generalization from robustness to representational shifts. We conduct extensive evaluations of eight state-of-the-art GFMs on 33 datasets spanning seven topic domains and six format domains, surfacing new empirical observations and practical insights for future research. Codes/data are available at https://github.com/smufang/GFMBenchmark.

cs.CL↗
arXiv2026

IBCircuit: Towards Holistic Circuit Discovery with Information Bottleneck

Circuit discovery has recently attracted attention as a potential research direction to explain the non-trivial behaviors of language models. It aims to find the computational subgraphs, also known as circuits, within the model that are responsible for solving specific tasks. However, most existing studies overlook the holistic nature of these circuits and require designing specific corrupted activations for different tasks, which is inaccurate and inefficient. In this work, we propose an end-to-end approach based on the principle of Information Bottleneck, called IBCircuit, to identify informative circuits holistically. IBCircuit is an optimization framework for holistic circuit discovery and can be applied to any given task without tediously corrupted activation design. In both the Indirect Object Identification (IOI) and Greater-Than tasks, IBCircuit identifies more faithful and minimal circuits in terms of critical node components and edge components compared to recent related work.

cs.LG↗
arXiv2026

Beyond Structure: Invariant Crystal Property Prediction with Pseudo-Particle Ray Diffraction

Crystal property prediction, governed by quantum mechanical principles, is computationally prohibitive to solve exactly for large many-body systems using traditional density functional theory. While machine learning models have emerged as efficient approximations for large-scale applications, their performance is strongly influenced by the choice of atomic representation. Although modern graph-based approaches have progressively incorporated more structural information, they often fail to capture long-range atomic interactions due to finite receptive fields and local encoding schemes. This limitation leads to distinct crystals being mapped to identical representations, hindering accurate property prediction. To address this, we introduce PRDNet that leverages unique reciprocal-space diffraction besides graph representations. To enhance sensitivity to elemental and environmental variations, we employ a data-driven pseudo-particle to generate a synthetic diffraction pattern. PRDNet ensures full invariance to crystallographic symmetries. Extensive experiments are conducted on Materials Project, JARVIS-DFT, and MatBench, demonstrating that the proposed model achieves state-of-the-art performance. The code is openly available at https://github.com/Bin-Cao/PRDNet.

cond-mat.mtrl-sci↗
arXiv2025

ParaFormer: A Generalized PageRank Graph Transformer for Graph Representation Learning

Graph Transformers (GTs) have emerged as a promising graph learning tool, leveraging their all-pair connected property to effectively capture global information. To address the over-smoothing problem in deep GNNs, global attention was initially introduced, eliminating the necessity for using deep GNNs. However, through empirical and theoretical analysis, we verify that the introduced global attention exhibits severe over-smoothing, causing node representations to become indistinguishable due to its inherent low-pass filtering. This effect is even stronger than that observed in GNNs. To mitigate this, we propose PageRank Transformer (ParaFormer), which features a PageRank-enhanced attention module designed to mimic the behavior of deep Transformers. We theoretically and empirically demonstrate that ParaFormer mitigates over-smoothing by functioning as an adaptive-pass filter. Experiments show that ParaFormer achieves consistent performance improvements across both node classification and graph classification tasks on 11 datasets ranging from thousands to millions of nodes, validating its efficacy. The supplementary material, including code and appendix, can be found in https://github.com/chaohaoyuan/ParaFormer.

cs.LG↗
arXiv2025

SteerX: Disentangled Steering for LLM Personalization

Large language models (LLMs) have shown remarkable success in recent years, enabling a wide range of applications, including intelligent assistants that support users' daily life and work. A critical factor in building such assistants is personalizing LLMs, as user preferences and needs vary widely. Activation steering, which directly leverages directions representing user preference in the LLM activation space to adjust its behavior, offers a cost-effective way to align the model's outputs with individual users. However, existing methods rely on all historical data to compute the steering vector, ignoring that not all content reflects true user preferences, which undermines the personalization signal. To address this, we propose SteerX, a disentangled steering method that isolates preference-driven components from preference-agnostic components. Grounded in causal inference theory, SteerX estimates token-level causal effects to identify preference-driven tokens, transforms these discrete signals into a coherent description, and then leverages them to steer personalized LLM generation. By focusing on the truly preference-driven information, SteerX produces more accurate activation steering vectors and enhances personalization. Experiments on two representative steering backbone methods across real-world datasets demonstrate that SteerX consistently enhances steering vector quality, offering a practical solution for more effective LLM personalization.

cs.CL↗
arXiv2025

Answer-Consistent Chain-of-thought Reinforcement Learning For Multi-modal Large Langauge Models

Recent advances in large language models (LLMs) have demonstrated that reinforcement learning with verifiable rewards (RLVR) can significantly enhance reasoning abilities by directly optimizing correctness, rather than relying solely on supervised imitation. This paradigm has been extended to multimodal LLMs for complex video and image understanding tasks. However, while outcome-driven RL improves answer accuracy, it can inadvertently decouple the reasoning chain from the final answer, leading to situations where models produce inconsistency between the reasoning trace and final answer. In our experiments on multiple-choice visual question-answering tasks, the standard GRPO method yields only 79.7\% consistency on MMVU between the reasoning steps and the chosen answers, indicating frequent mismatches between answers and reasoning. To this end, we propose Answer-Consistent Reinforcement Learning (ACRE) that modifies the GRPO algorithm with an auxiliary consistency check. After the model generates a chain of thought and an initial answer for a given question, we shuffle the answer options and prompt the model again with the same reasoning trace to predict a second answer. We design a consistency-verification reward that grants a high reward only if both the original and the post-shuffle answers agree and are correct; otherwise, a lower reward is assigned accordingly. This mechanism penalizes reasoning-answer misalignment and discourages the model from relying on spurious patterns, such as option ordering biases. We evaluate ACRE on challenging Video Reasoning benchmarks and multimodal math reasoning benchmarks, achieving an average 2.2\% and 1.5\% improvement for Video Reasoning and Math Reasoning tasks over the GRPO baseline.

cs.CV↗
arXiv2025

Reinforced Strategy Optimization for Conversational Recommender Systems via Network-of-Experts

Conversational Recommender Systems (CRSs) aim to provide personalized recommendations through multi-turn natural language interactions with users. Given the strong interaction and reasoning skills of Large Language Models (LLMs), leveraging LLMs for CRSs has recently emerged as a promising direction. However, existing LLM-based methods often lack explicit optimization of interaction strategies, instead relying on unified prompts and the LLM's internal knowledge to decide how to interact, which can lead to suboptimal outcomes. In this paper, we propose a novel Reinforced Strategy Optimization (RSO) method for CRS, which decomposes the process of generating strategy-driven response decisions into the macro-level strategy planning and micro-level strategy adaptation through a network-of-experts architecture. At the macro level, a Planner expert selects macro-level interaction strategies (e.g., recommend, explain, encourage). At the micro level, an Actor expert generates detailed responses conditioned on the selected macro-level strategy, guided by auxiliary experts that provide complementary information such as user preferences and factual grounding. This hierarchical decomposition disentangles the optimization of different sub-tasks involved in CRS response generation, enabling more tractable learning at each level. To address the scarcity of high-quality multi-turn training data, we formulate strategy learning as a reinforcement learning problem, guided by an LLM-based reward model to achieve automatic strategy exploration. Extensive experiments show that RSO significantly improves interaction performance compared to state-of-the-art baselines, demonstrating the effectiveness of explicit hierarchical strategy optimization for CRS.

cs.CL↗
arXiv2025

Can LLMs Alleviate Catastrophic Forgetting in Graph Continual Learning? A Systematic Study

Nowadays, real-world data, including graph-structure data, often arrives in a streaming manner, which means that learning systems need to continuously acquire new knowledge without forgetting previously learned information. Although substantial existing works attempt to address catastrophic forgetting in graph machine learning, they are all based on training from scratch with streaming data. With the rise of pretrained models, an increasing number of studies have leveraged their strong generalization ability for continual learning. Therefore, in this work, we attempt to answer whether large language models (LLMs) can mitigate catastrophic forgetting in Graph Continual Learning (GCL). We first point out that current experimental setups for GCL have significant flaws, as the evaluation stage may lead to task ID leakage. Then, we evaluate the performance of LLMs in more realistic scenarios and find that even minor modifications can lead to outstanding results. Finally, based on extensive experiments, we propose a simple-yet-effective method, Simple Graph Continual Learning (SimGCL), that surpasses the previous state-of-the-art GNN-based baseline by around 20% under the rehearsal-free constraint. To facilitate reproducibility, we have developed an easy-to-use benchmark LLM4GCL for training and evaluating existing GCL methods. The code is available at: https://github.com/ZhixunLEE/LLM4GCL.

cs.LG↗
arXiv2025

MoLoRAG: Bootstrapping Document Understanding via Multi-modal Logic-aware Retrieval

Document Understanding is a foundational AI capability with broad applications, and Document Question Answering (DocQA) is a key evaluation task. Traditional methods convert the document into text for processing by Large Language Models (LLMs), but this process strips away critical multi-modal information like figures. While Large Vision-Language Models (LVLMs) address this limitation, their constrained input size makes multi-page document comprehension infeasible. Retrieval-augmented generation (RAG) methods mitigate this by selecting relevant pages, but they rely solely on semantic relevance, ignoring logical connections between pages and the query, which is essential for reasoning. To this end, we propose MoLoRAG, a logic-aware retrieval framework for multi-modal, multi-page document understanding. By constructing a page graph that captures contextual relationships between pages, a lightweight VLM performs graph traversal to retrieve relevant pages, including those with logical connections often overlooked. This approach combines semantic and logical relevance to deliver more accurate retrieval. After retrieval, the top-$K$ pages are fed into arbitrary LVLMs for question answering. To enhance flexibility, MoLoRAG offers two variants: a training-free solution for easy deployment and a fine-tuned version to improve logical relevance checking. Experiments on four DocQA datasets demonstrate average improvements of 9.68% in accuracy over LVLM direct inference and 7.44% in retrieval precision over baselines. Codes and datasets are released at https://github.com/WxxShirley/MoLoRAG.

cs.CL↗
arXiv2025

Hierarchical Graph Information Bottleneck for Multi-Behavior Recommendation

In real-world recommendation scenarios, users typically engage with platforms through multiple types of behavioral interactions. Multi-behavior recommendation algorithms aim to leverage various auxiliary user behaviors to enhance prediction for target behaviors of primary interest (e.g., buy), thereby overcoming performance limitations caused by data sparsity in target behavior records. Current state-of-the-art approaches typically employ hierarchical design following either cascading (e.g., view$\rightarrow$cart$\rightarrow$buy) or parallel (unified$\rightarrow$behavior$\rightarrow$specific components) paradigms, to capture behavioral relationships. However, these methods still face two critical challenges: (1) severe distribution disparities across behaviors, and (2) negative transfer effects caused by noise in auxiliary behaviors. In this paper, we propose a novel model-agnostic Hierarchical Graph Information Bottleneck (HGIB) framework for multi-behavior recommendation to effectively address these challenges. Following information bottleneck principles, our framework optimizes the learning of compact yet sufficient representations that preserve essential information for target behavior prediction while eliminating task-irrelevant redundancies. To further mitigate interaction noise, we introduce a Graph Refinement Encoder (GRE) that dynamically prunes redundant edges through learnable edge dropout mechanisms. We conduct comprehensive experiments on three real-world public datasets, which demonstrate the superior effectiveness of our framework. Beyond these widely used datasets in the academic community, we further expand our evaluation on several real industrial scenarios and conduct an online A/B testing, showing again a significant improvement in multi-behavior recommendations. The source code of our proposed HGIB is available at https://github.com/zhy99426/HGIB.

cs.IR↗
arXiv2025

Adaptive Graph Integration for Cross-Domain Recommendation via Heterogeneous Graph Coordinators

In the digital era, users typically interact with diverse items across multiple domains (e.g., e-commerce, streaming platforms, and social networks), generating intricate heterogeneous interaction graphs. Leveraging multi-domain data can improve recommendation systems by enriching user insights and mitigating data sparsity in individual domains. However, integrating such multi-domain knowledge for cross-domain recommendation remains challenging due to inherent disparities in user behavior and item characteristics and the risk of negative transfer, where irrelevant or conflicting information from the source domains adversely impacts the target domain's performance. To tackle these challenges, we propose HAGO, a novel framework with \textbf{H}eterogeneous \textbf{A}daptive \textbf{G}raph co\textbf{O}rdinators, which dynamically integrates multi-domain graphs into a cohesive structure. HAGO adaptively adjusts the connections between coordinators and multi-domain graph nodes to enhance beneficial inter-domain interactions while alleviating negative transfer. Furthermore, we introduce a universal multi-domain graph pre-training strategy alongside HAGO to collaboratively learn high-quality node representations across domains. Being compatible with various graph-based models and pre-training techniques, HAGO demonstrates broad applicability and effectiveness. Extensive experiments show that our framework outperforms state-of-the-art methods in cross-domain recommendation scenarios, underscoring its potential for real-world applications. The source code is available at https://github.com/zhy99426/HAGO.

cs.IR↗
arXiv2025

Measuring What Makes You Unique: Difference-Aware User Modeling for Enhancing LLM Personalization

Personalizing Large Language Models (LLMs) has become a critical step in facilitating their widespread application to enhance individual life experiences. In pursuit of personalization, distilling key preference information from an individual's historical data as instructional preference context to customize LLM generation has emerged as a promising direction. However, these methods face a fundamental limitation by overlooking the inter-user comparative analysis, which is essential for identifying the inter-user differences that truly shape preferences. To address this limitation, we propose Difference-aware Personalization Learning (DPL), a novel approach that emphasizes extracting inter-user differences to enhance LLM personalization. DPL strategically selects representative users for comparison and establishes a structured standard to extract meaningful, task-relevant differences for customizing LLM generation. Extensive experiments on real-world datasets demonstrate that DPL significantly enhances LLM personalization. We release our code at https://github.com/SnowCharmQ/DPL.

cs.CL↗
arXiv2025

Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysis

In recent years, graph prompting has emerged as a promising research direction, enabling the learning of additional tokens or subgraphs appended to the original graphs without requiring retraining of pre-trained graph models across various applications. This novel paradigm, shifting from the traditional pretraining and finetuning to pretraining and prompting has shown significant empirical success in simulating graph data operations, with applications ranging from recommendation systems to biological networks and graph transferring. However, despite its potential, the theoretical underpinnings of graph prompting remain underexplored, raising critical questions about its fundamental effectiveness. The lack of rigorous theoretical proof of why and how much it works is more like a dark cloud over the graph prompt area to go further. To fill this gap, this paper introduces a theoretical framework that rigorously analyzes graph prompting from a data operation perspective. Our contributions are threefold: First, we provide a formal guarantee theorem, demonstrating graph prompts capacity to approximate graph transformation operators, effectively linking upstream and downstream tasks. Second, we derive upper bounds on the error of these data operations by graph prompts for a single graph and extend this discussion to batches of graphs, which are common in graph model training. Third, we analyze the distribution of data operation errors, extending our theoretical findings from linear graph models (e.g., GCN) to non-linear graph models (e.g., GAT). Extensive experiments support our theoretical results and confirm the practical implications of these guarantees.

cs.LG↗