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Hong Zhang

Publications and source records attributed to Hong Zhang.

At least 217 records · Page 12Linked to original sources

Provable Benefit of Multitask Representation Learning in Reinforcement Learning

As representation learning becomes a powerful technique to reduce sample complexity in reinforcement learning (RL) in practice, theoretical understanding of its advantage is still limited. In this paper, we theoretically characterize the benefit of representation learning under the low-rank Markov decision process (MDP) model. We first study multitask low-rank RL (as upstream training), where all tasks share a common representation, and propose a new multitask reward-free algorithm called REFUEL. REFUEL learns both the transition kernel and the near-optimal policy for each task, and outputs a well-learned representation for downstream tasks. Our result demonstrates that multitask representation learning is provably more sample-efficient than learning each task individually, as long as the total number of tasks is above a certain threshold. We then study the downstream RL in both online and offline settings, where the agent is assigned with a new task sharing the same representation as the upstream tasks. For both online and offline settings, we develop a sample-efficient algorithm, and show that it finds a near-optimal policy with the suboptimality gap bounded by the sum of the estimation error of the learned representation in upstream and a vanishing term as the number of downstream samples becomes large. Our downstream results of online and offline RL further capture the benefit of employing the learned representation from upstream as opposed to learning the representation of the low-rank model directly. To the best of our knowledge, this is the first theoretical study that characterizes the benefit of representation learning in exploration-based reward-free multitask RL for both upstream and downstream tasks.

cs.LG↗

FinBERT-MRC: financial named entity recognition using BERT under the machine reading comprehension paradigm

Financial named entity recognition (FinNER) from literature is a challenging task in the field of financial text information extraction, which aims to extract a large amount of financial knowledge from unstructured texts. It is widely accepted to use sequence tagging frameworks to implement FinNER tasks. However, such sequence tagging models cannot fully take advantage of the semantic information in the texts. Instead, we formulate the FinNER task as a machine reading comprehension (MRC) problem and propose a new model termed FinBERT-MRC. This formulation introduces significant prior information by utilizing well-designed queries, and extracts start index and end index of target entities without decoding modules such as conditional random fields (CRF). We conduct experiments on a publicly available Chinese financial dataset ChFinAnn and a real-word bussiness dataset AdminPunish. FinBERT-MRC model achieves average F1 scores of 92.78% and 96.80% on the two datasets, respectively, with average F1 gains +3.94% and +0.89% over some sequence tagging models including BiLSTM-CRF, BERT-Tagger, and BERT-CRF. The source code is available at https://github.com/zyz0000/FinBERT-MRC.

cs.CL↗

A robust and lightweight deep attention multiple instance learning algorithm for predicting genetic alterations

Deep-learning models based on whole-slide digital pathology images (WSIs) become increasingly popular for predicting molecular biomarkers. Instance-based models has been the mainstream strategy for predicting genetic alterations using WSIs although bag-based models along with self-attention mechanism-based algorithms have been proposed for other digital pathology applications. In this paper, we proposed a novel Attention-based Multiple Instance Mutation Learning (AMIML) model for predicting gene mutations. AMIML was comprised of successive 1-D convolutional layers, a decoder, and a residual weight connection to facilitate further integration of a lightweight attention mechanism to detect the most predictive image patches. Using data for 24 clinically relevant genes from four cancer cohorts in The Cancer Genome Atlas (TCGA) studies (UCEC, BRCA, GBM and KIRC), we compared AMIML with one popular instance-based model and four recently published bag-based models (e.g., CHOWDER, HE2RNA, etc.). AMIML demonstrated excellent robustness, not only outperforming all the five baseline algorithms in the vast majority of the tested genes (17 out of 24), but also providing near-best-performance for the other seven genes. Conversely, the performance of the baseline published algorithms varied across different cancers/genes. In addition, compared to the published models for genetic alterations, AMIML provided a significant improvement for predicting a wide range of genes (e.g., KMT2C, TP53, and SETD2 for KIRC; ERBB2, BRCA1, and BRCA2 for BRCA; JAK1, POLE, and MTOR for UCEC) as well as produced outstanding predictive models for other clinically relevant gene mutations, which have not been reported in the current literature. Furthermore, with the flexible and interpretable attention-based MIL pooling mechanism, AMIML could further zero-in and detect predictive image patches.

q-bio.QM↗

Optimal Checkpointing for Adjoint Multistage Time-Stepping Schemes

We consider checkpointing strategies that minimize the number of recomputations needed when performing discrete adjoint computations using multistage time-stepping schemes, which requires computing several substeps within one complete time step. In this case we propose two algorithms that can generate optimal checkpointing schedules under weak assumptions. The first is an extension of the seminal Revolve algorithm adapted to multistage schemes. The second algorithm, named CAMS, is developed based on dynamic programming, and it requires the least number of recomputations when compared with other algorithms. The CAMS algorithm is made publicly available in a library with bindings to C and Python. Numerical results illustrate that the proposed algorithms can deliver up to two times the speedup compared with that of classical Revolve. Moreover, we discuss a tailored implementation of an adjoint computation that is arguably better suited for mature scientific computing libraries by avoiding the central control assumed by the original checkpointing strategy. The proposed algorithms have been adopted by the PETSc TSAdjoint library. Their performance has been demonstrated with a large-scale PDE-constrained optimization problem on a leadership-class supercomputer.

cs.MS↗

Following Closely: A Robust Monocular Person Following System for Mobile Robot

Monocular person following (MPF) is a capability that supports many useful applications of a mobile robot. However, existing MPF solutions are not completely satisfactory. Firstly, they often fail to track the target at a close distance either because they are based on a visual servo or they need the observation of the full body by the robot. Secondly, their target Re-IDentification (Re-ID) abilities are weak in cases of target appearance change and highly similar appearance of distracting people. To remove the assumption of full-body observation, we propose a width-based tracking module, which relies on the target width, which can be observed even at a close distance. For handling issues related to appearance variation, we use a global CNN (convolutional neural network) descriptor to represent the target and a ridge regression model to learn a target appearance model online. We adopt a sampling strategy for online classifier learning, in which both long-term and short-term samples are involved. We evaluate our method in two datasets including a public person following dataset and a custom-built one with challenging target appearance and target distance. Our method achieves state-of-the-art (SOTA) results on both datasets. For the benefit of the community, we make public the dataset and the source code.

cs.RO↗

FedDUAP: Federated Learning with Dynamic Update and Adaptive Pruning Using Shared Data on the Server

Despite achieving remarkable performance, Federated Learning (FL) suffers from two critical challenges, i.e., limited computational resources and low training efficiency. In this paper, we propose a novel FL framework, i.e., FedDUAP, with two original contributions, to exploit the insensitive data on the server and the decentralized data in edge devices to further improve the training efficiency. First, a dynamic server update algorithm is designed to exploit the insensitive data on the server, in order to dynamically determine the optimal steps of the server update for improving the convergence and accuracy of the global model. Second, a layer-adaptive model pruning method is developed to perform unique pruning operations adapted to the different dimensions and importance of multiple layers, to achieve a good balance between efficiency and effectiveness. By integrating the two original techniques together, our proposed FL model, FedDUAP, significantly outperforms baseline approaches in terms of accuracy (up to 4.8% higher), efficiency (up to 2.8 times faster), and computational cost (up to 61.9% smaller).

cs.DC↗

Optimize Deep Learning Models for Prediction of Gene Mutations Using Unsupervised Clustering

Deep learning has become the mainstream methodological choice for analyzing and interpreting whole-slide digital pathology images (WSIs). It is commonly assumed that tumor regions carry most predictive information. In this paper, we proposed an unsupervised clustering-based multiple-instance learning, and apply our method to develop deep-learning models for prediction of gene mutations using WSIs from three cancer types in The Cancer Genome Atlas (TCGA) studies (CRC, LUAD, and HNSCC). We showed that unsupervised clustering of image patches could help identify predictive patches, exclude patches lack of predictive information, and therefore improve prediction on gene mutations in all three different cancer types, compared with the WSI based method without selection of image patches and models based on only tumor regions. Additionally, our proposed algorithm outperformed two recently published baseline algorithms leveraging unsupervised clustering to assist model prediction. The unsupervised-clustering-based approach for mutation prediction allows identification of the spatial regions related to mutation of a specific gene via the resolved probability scores, highlighting the heterogeneity of a predicted genotype in the tumor microenvironment. Finally, our study also demonstrated that selection of tumor regions of WSIs is not always the best way to identify patches for prediction of gene mutations, and other tissue types in the tumor micro-environment may provide better prediction ability for gene mutations than tumor tissues.

q-bio.QM↗

Mapping While Following: 2D LiDAR SLAM in Indoor Dynamic Environments with a Person Tracker

2D LiDAR SLAM (Simultaneous Localization and Mapping) is widely used in indoor environments due to its stability and flexibility. However, its mapping procedure is usually operated by a joystick in static environments, while indoor environments often are dynamic with moving objects such as people. The generated map with noisy points due to the dynamic objects is usually incomplete and distorted. To address this problem, we propose a framework of 2D-LiDAR-based SLAM without manual control that effectively excludes dynamic objects (people) and simplify the process for a robot to map an environment. The framework, which includes three parts: people tracking, filtering and following. We verify our proposed framework in experiments with two classic 2D-LiDAR-based SLAM algorithms in indoor environments. The results show that this framework is effective in handling dynamic objects and reducing the mapping error.

cs.RO↗

PL-VINS: Real-Time Monocular Visual-Inertial SLAM with Point and Line Features

Leveraging line features to improve localization accuracy of point-based visual-inertial SLAM (VINS) is gaining interest as they provide additional constraints on scene structure. However, real-time performance when incorporating line features in VINS has not been addressed. This paper presents PL-VINS, a real-time optimization-based monocular VINS method with point and line features, developed based on the state-of-the-art point-based VINS-Mono \cite{vins}. We observe that current works use the LSD \cite{lsd} algorithm to extract line features; however, LSD is designed for scene shape representation instead of the pose estimation problem, which becomes the bottleneck for the real-time performance due to its high computational cost. In this paper, a modified LSD algorithm is presented by studying a hidden parameter tuning and length rejection strategy. The modified LSD can run at least three times as fast as LSD. Further, by representing space lines with the Plücker coordinates, the residual error in line estimation is modeled in terms of the point-to-line distance, which is then minimized by iteratively updating the minimum four-parameter orthonormal representation of the Plücker coordinates. Experiments in a public benchmark dataset show that the localization error of our method is 12-16\% less than that of VINS-Mono at the same pose update frequency. %For the benefit of the community, The source code of our method is available at: https://github.com/cnqiangfu/PL-VINS.

cs.RO↗

Sparse Optical Flow-Based Line Feature Tracking

In this paper we propose a novel sparse optical flow (SOF)-based line feature tracking method for the camera pose estimation problem. This method is inspired by the point-based SOF algorithm and developed based on an observation that two adjacent images in time-varying image sequences satisfy brightness invariant. Based on this observation, we re-define the goal of line feature tracking: track two endpoints of a line feature instead of the entire line based on gray value matching instead of descriptor matching. To achieve this goal, an efficient two endpoint tracking (TET) method is presented: first, describe a given line feature with its two endpoints; next, track the two endpoints based on SOF to obtain two new tracked endpoints by minimizing a pixel-level grayscale residual function; finally, connect the two tracked endpoints to generate a new line feature. The correspondence is established between the given and the new line feature. Compared with current descriptor-based methods, our TET method needs not to compute descriptors and detect line features repeatedly. Naturally, it has an obvious advantage over computation. Experiments in several public benchmark datasets show our method yields highly competitive accuracy with an obvious advantage over speed.

cs.CV↗

Condition-Invariant and Compact Visual Place Description by Convolutional Autoencoder

Visual place recognition (VPR) in condition-varying environments is still an open problem. Popular solutions are CNN-based image descriptors, which have been shown to outperform traditional image descriptors based on hand-crafted visual features. However, there are two drawbacks of current CNN-based descriptors: a) their high dimension and b) lack of generalization, leading to low efficiency and poor performance in applications. In this paper, we propose to use a convolutional autoencoder (CAE) to tackle this problem. We employ a high-level layer of a pre-trained CNN to generate features, and train a CAE to map the features to a low-dimensional space to improve the condition invariance property of the descriptor and reduce its dimension at the same time. We verify our method in three challenging datasets involving significant illumination changes, and our method is shown to be superior to the state-of-the-art. For the benefit of the community, we make public the source code.

cs.CV↗

Deep Polarimetric HDR Reconstruction

This paper proposes a novel learning based high-dynamic-range (HDR) reconstruction method using a polarization camera. We utilize a previous observation that polarization filters with different orientations can attenuate natural light differently, and we treat the multiple images acquired by the polarization camera as a set acquired under different exposure times, to introduce the development of solutions for the HDR reconstruction problem. We propose a deep HDR reconstruction framework with a feature masking mechanism that uses polarimetric cues available from the polarization camera, called Deep Polarimetric HDR Reconstruction (DPHR). The proposed DPHR obtains polarimetric information to propagate valid features through the network more effectively to regress the missing pixels. We demonstrate through both qualitative and quantitative evaluations that the proposed DPHR performs favorably than state-of-the-art HDR reconstruction algorithms.

eess.IV↗

DePS: An improved deep learning model for de novo peptide sequencing

De novo peptide sequencing from mass spectrometry data is an important method for protein identification. Recently, various deep learning approaches were applied for de novo peptide sequencing and DeepNovoV2 is one of the represetative models. In this study, we proposed an enhanced model, DePS, which can improve the accuracy of de novo peptide sequencing even with missing signal peaks or large number of noisy peaks in tandem mass spectrometry data. It is showed that, for the same test set of DeepNovoV2, the DePS model achieved excellent results of 74.22%, 74.21% and 41.68% for amino acid recall, amino acid precision and peptide recall respectively. Furthermore, the results suggested that DePS outperforms DeepNovoV2 on the cross species dataset.

q-bio.QM↗

Trust-region approximation of extreme trajectories in power system dynamics

In this work we present a novel technique, based on a trust-region optimization algorithm and second-order trajectory sensitivities, to compute the extreme trajectories of power system dynamic simulations given a bounded set that represents parametric uncertainty. We show how this method, while remaining computationally efficient compared with sampling-based techniques, overcomes the limitations of previous sensitivity-based techniques to approximate the bounds of the trajectories, when the local approximation loses validity because of the nonlinearity. In addition, we show how this method can be adapted to account for those cases in which the initial conditions depend on the uncertain parameter. To conclude, we present several numerical experiments that showcase the accuracy and scalability of the technique, including a demonstration on the IEEE New England test system.

math.OC↗

Online Mutual Adaptation of Deep Depth Prediction and Visual SLAM

The ability of accurate depth prediction by a convolutional neural network (CNN) is a major challenge for its wide use in practical visual simultaneous localization and mapping (SLAM) applications, such as enhanced camera tracking and dense mapping. This paper is set out to answer the following question: Can we tune a depth prediction CNN with the help of a visual SLAM algorithm even if the CNN is not trained for the current operating environment in order to benefit the SLAM performance? To this end, we propose a novel online adaptation framework consisting of two complementary processes: a SLAM algorithm that is used to generate keyframes to fine-tune the depth prediction and another algorithm that uses the online adapted depth to improve map quality. Once the potential noisy map points are removed, we perform global photometric bundle adjustment (BA) to improve the overall SLAM performance. Experimental results on both benchmark datasets and a real robot in our own experimental environments show that our proposed method improves the overall SLAM accuracy. While regularization has been shown to be effective in multi-task classification problems, we present experimental results and an ablation study to show the effectiveness of regularization in preventing catastrophic forgetting in the online adaptation of depth prediction, a single-task regression problem. In addition, we compare our online adaptation framework against the state-of-the-art pre-trained depth prediction CNNs to show that our online adapted depth prediction CNN outperforms the depth prediction CNNs that have been trained on a large collection of datasets.

cs.RO↗

Constrains of the axion-like particle from black hole spin superradiance

The mass of the axion-like particles could be constrained by the observed black hole spin distribution. In this work, we update the previous calculations using the recently improved superradiance formula, which is much more accurate. The effect of the merger time scale is also carefully investigated with Bayesian analysis. After integration of the merger time $τ_\mathrm{M}$, we find two favoured mass ranges $7.94\times10^{-13}~\text{eV}\leqμ\leq8.71\times10^{-13}~\text{eV}$ and $1.44\times10^{-12}~\text{eV}\leqμ\leq1.74\times10^{-12}~\text{eV}$ . These two favored ranges do not depend on the prior distribution of the $τ_\mathrm{M}$. We also find the strength of evidence for the range $-12.80\leq\log_{10}(μ/\text{eV})\leq-12.34$, which is excluded in the analysis with fixed $τ_\text{M}$, could increase by several orders of magnitude with $τ_\mathrm{M}$ averaged.

gr-qc↗

MonoDistill: Learning Spatial Features for Monocular 3D Object Detection

3D object detection is a fundamental and challenging task for 3D scene understanding, and the monocular-based methods can serve as an economical alternative to the stereo-based or LiDAR-based methods. However, accurately detecting objects in the 3D space from a single image is extremely difficult due to the lack of spatial cues. To mitigate this issue, we propose a simple and effective scheme to introduce the spatial information from LiDAR signals to the monocular 3D detectors, without introducing any extra cost in the inference phase. In particular, we first project the LiDAR signals into the image plane and align them with the RGB images. After that, we use the resulting data to train a 3D detector (LiDAR Net) with the same architecture as the baseline model. Finally, this LiDAR Net can serve as the teacher to transfer the learned knowledge to the baseline model. Experimental results show that the proposed method can significantly boost the performance of the baseline model and ranks the $1^{st}$ place among all monocular-based methods on the KITTI benchmark. Besides, extensive ablation studies are conducted, which further prove the effectiveness of each part of our designs and illustrate what the baseline model has learned from the LiDAR Net. Our code will be released at \url{https://github.com/monster-ghost/MonoDistill}.

cs.CV↗

The PETSc Community Is the Infrastructure

The communities who develop and support open source scientific software packages are crucial to the utility and success of such packages. Moreover, these communities form an important part of the human infrastructure that enables scientific progress. This paper discusses aspects of the PETSc (Portable Extensible Toolkit for Scientific Computation) community, its organization, and technical approaches that enable community members to help each other efficiently.

cs.SE↗