arXiv subjects

Hongbin Liu

Publications and source records attributed to Hongbin Liu.

At least 91 records · Page 5Linked to original sources

arXiv2024

Acceleration without Disruption: DFT Software as a Service

Density functional theory (DFT) has been a cornerstone in computational chemistry, physics, and materials science for decades, benefiting from advancements in computational power and theoretical methods. This paper introduces a novel, cloud-native application, Accelerated DFT, which offers an order of magnitude acceleration in DFT simulations. By integrating state-of-the-art cloud infrastructure and redesigning algorithms for graphic processing units (GPUs), Accelerated DFT achieves high-speed calculations without sacrificing accuracy. It provides an accessible and scalable solution for the increasing demands of DFT calculations in scientific communities. The implementation details, examples, and benchmark results illustrate how Accelerated DFT can significantly expedite scientific discovery across various domains.

physics.chem-ph↗

arXiv2024

Visual Hallucinations of Multi-modal Large Language Models

Visual hallucination (VH) means that a multi-modal LLM (MLLM) imagines incorrect details about an image in visual question answering. Existing studies find VH instances only in existing image datasets, which results in biased understanding of MLLMs' performance under VH due to limited diversity of such VH instances. In this work, we propose a tool called VHTest to generate a diverse set of VH instances. Specifically, VHTest finds some initial VH instances in existing image datasets (e.g., COCO), generates a text description for each VH mode, and uses a text-to-image generative model (e.g., DALL-E-3) to generate VH images based on the text descriptions. We collect a benchmark dataset with 1,200 VH instances in 8 VH modes using VHTest. We find that existing MLLMs such as GPT-4V, LLaVA-1.5, and MiniGPT-v2 hallucinate for a large fraction of the instances in our benchmark. Moreover, we find that fine-tuning an MLLM using our benchmark dataset reduces its likelihood to hallucinate without sacrificing its performance on other benchmarks. Our benchmarks are publicly available: https://github.com/wenhuang2000/VHTest.

cs.CV↗

arXiv2024

VS-Assistant: Versatile Surgery Assistant on the Demand of Surgeons

The surgical intervention is crucial to patient healthcare, and many studies have developed advanced algorithms to provide understanding and decision-making assistance for surgeons. Despite great progress, these algorithms are developed for a single specific task and scenario, and in practice require the manual combination of different functions, thus limiting the applicability. Thus, an intelligent and versatile surgical assistant is expected to accurately understand the surgeon's intentions and accordingly conduct the specific tasks to support the surgical process. In this work, by leveraging advanced multimodal large language models (MLLMs), we propose a Versatile Surgery Assistant (VS-Assistant) that can accurately understand the surgeon's intention and complete a series of surgical understanding tasks, e.g., surgical scene analysis, surgical instrument detection, and segmentation on demand. Specifically, to achieve superior surgical multimodal understanding, we devise a mixture of projectors (MOP) module to align the surgical MLLM in VS-Assistant to balance the natural and surgical knowledge. Moreover, we devise a surgical Function-Calling Tuning strategy to enable the VS-Assistant to understand surgical intentions, and thus make a series of surgical function calls on demand to meet the needs of the surgeons. Extensive experiments on neurosurgery data confirm that our VS-Assistant can understand the surgeon's intention more accurately than the existing MLLM, resulting in overwhelming performance in textual analysis and visual tasks. Source code and models will be made public.

cs.CV↗

arXiv2024

Enhancing Surgical Robots with Embodied Intelligence for Autonomous Ultrasound Scanning

Ultrasound robots are increasingly used in medical diagnostics and early disease screening. However, current ultrasound robots lack the intelligence to understand human intentions and instructions, hindering autonomous ultrasound scanning. To solve this problem, we propose a novel Ultrasound Embodied Intelligence system that equips ultrasound robots with the large language model (LLM) and domain knowledge, thereby improving the efficiency of ultrasound robots. Specifically, we first design an ultrasound operation knowledge database to add expertise in ultrasound scanning to the LLM, enabling the LLM to perform precise motion planning. Furthermore, we devise a dynamic ultrasound scanning strategy based on a \textit{think-observe-execute} prompt engineering, allowing LLMs to dynamically adjust motion planning strategies during the scanning procedures. Extensive experiments demonstrate that our system significantly improves ultrasound scan efficiency and quality from verbal commands. This advancement in autonomous medical scanning technology contributes to non-invasive diagnostics and streamlined medical workflows.

cs.RO↗

arXiv2024

A Dataset and Model for Realistic License Plate Deblurring

Vehicle license plate recognition is a crucial task in intelligent traffic management systems. However, the challenge of achieving accurate recognition persists due to motion blur from fast-moving vehicles. Despite the widespread use of image synthesis approaches in existing deblurring and recognition algorithms, their effectiveness in real-world scenarios remains unproven. To address this, we introduce the first large-scale license plate deblurring dataset named License Plate Blur (LPBlur), captured by a dual-camera system and processed through a post-processing pipeline to avoid misalignment issues. Then, we propose a License Plate Deblurring Generative Adversarial Network (LPDGAN) to tackle the license plate deblurring: 1) a Feature Fusion Module to integrate multi-scale latent codes; 2) a Text Reconstruction Module to restore structure through textual modality; 3) a Partition Discriminator Module to enhance the model's perception of details in each letter. Extensive experiments validate the reliability of the LPBlur dataset for both model training and testing, showcasing that our proposed model outperforms other state-of-the-art motion deblurring methods in realistic license plate deblurring scenarios. The dataset and code are available at https://github.com/haoyGONG/LPDGAN.

cs.CV↗

arXiv2024

DD-VNB: A Depth-based Dual-Loop Framework for Real-time Visually Navigated Bronchoscopy

Real-time 6 DOF localization of bronchoscopes is crucial for enhancing intervention quality. However, current vision-based technologies struggle to balance between generalization to unseen data and computational speed. In this study, we propose a Depth-based Dual-Loop framework for real-time Visually Navigated Bronchoscopy (DD-VNB) that can generalize across patient cases without the need of re-training. The DD-VNB framework integrates two key modules: depth estimation and dual-loop localization. To address the domain gap among patients, we propose a knowledge-embedded depth estimation network that maps endoscope frames to depth, ensuring generalization by eliminating patient-specific textures. The network embeds view synthesis knowledge into a cycle adversarial architecture for scale-constrained monocular depth estimation. For real-time performance, our localization module embeds a fast ego-motion estimation network into the loop of depth registration. The ego-motion inference network estimates the pose change of the bronchoscope in high frequency while depth registration against the pre-operative 3D model provides absolute pose periodically. Specifically, the relative pose changes are fed into the registration process as the initial guess to boost its accuracy and speed. Experiments on phantom and in-vivo data from patients demonstrate the effectiveness of our framework: 1) monocular depth estimation outperforms SOTA, 2) localization achieves an accuracy of Absolute Tracking Error (ATE) of 4.7 $\pm$ 3.17 mm in phantom and 6.49 $\pm$ 3.88 mm in patient data, 3) with a frame-rate approaching video capture speed, 4) without the necessity of case-wise network retraining. The framework's superior speed and accuracy demonstrate its promising clinical potential for real-time bronchoscopic navigation.

cs.CV↗

arXiv2024

BronchoCopilot: Towards Autonomous Robotic Bronchoscopy via Multimodal Reinforcement Learning

Bronchoscopy plays a significant role in the early diagnosis and treatment of lung diseases. This process demands physicians to maneuver the flexible endoscope for reaching distal lesions, particularly requiring substantial expertise when examining the airways of the upper lung lobe. With the development of artificial intelligence and robotics, reinforcement learning (RL) method has been applied to the manipulation of interventional surgical robots. However, unlike human physicians who utilize multimodal information, most of the current RL methods rely on a single modality, limiting their performance. In this paper, we propose BronchoCopilot, a multimodal RL agent designed to acquire manipulation skills for autonomous bronchoscopy. BronchoCopilot specifically integrates images from the bronchoscope camera and estimated robot poses, aiming for a higher success rate within challenging airway environment. We employ auxiliary reconstruction tasks to compress multimodal data and utilize attention mechanisms to achieve an efficient latent representation of this data, serving as input for the RL module. This framework adopts a stepwise training and fine-tuning approach to mitigate the challenges of training difficulty. Our evaluation in the realistic simulation environment reveals that BronchoCopilot, by effectively harnessing multimodal information, attains a success rate of approximately 90\% in fifth generation airways with consistent movements. Additionally, it demonstrates a robust capacity to adapt to diverse cases.

cs.RO↗

arXiv2024

CorruptEncoder: Data Poisoning based Backdoor Attacks to Contrastive Learning

Contrastive learning (CL) pre-trains general-purpose encoders using an unlabeled pre-training dataset, which consists of images or image-text pairs. CL is vulnerable to data poisoning based backdoor attacks (DPBAs), in which an attacker injects poisoned inputs into the pre-training dataset so the encoder is backdoored. However, existing DPBAs achieve limited effectiveness. In this work, we take the first step to analyze the limitations of existing backdoor attacks and propose new DPBAs called CorruptEncoder to CL. CorruptEncoder introduces a new attack strategy to create poisoned inputs and uses a theory-guided method to maximize attack effectiveness. Our experiments show that CorruptEncoder substantially outperforms existing DPBAs. In particular, CorruptEncoder is the first DPBA that achieves more than 90% attack success rates with only a few (3) reference images and a small poisoning ratio 0.5%. Moreover, we also propose a defense, called localized cropping, to defend against DPBAs. Our results show that our defense can reduce the effectiveness of DPBAs, but it sacrifices the utility of the encoder, highlighting the need for new defenses.

cs.CR↗

arXiv2024

Design and Visual Servoing Control of a Hybrid Dual-Segment Flexible Neurosurgical Robot for Intraventricular Biopsy

Traditional rigid endoscopes have challenges in flexibly treating tumors located deep in the brain, and low operability and fixed viewing angles limit its development. This study introduces a novel dual-segment flexible robotic endoscope MicroNeuro, designed to perform biopsies with dexterous surgical manipulation deep in the brain. Taking into account the uncertainty of the control model, an image-based visual servoing with online robot Jacobian estimation has been implemented to enhance motion accuracy. Furthermore, the application of model predictive control with constraints significantly bolsters the flexible robot's ability to adaptively track mobile objects and resist external interference. Experimental results underscore that the proposed control system enhances motion stability and precision. Phantom testing substantiates its considerable potential for deployment in neurosurgery.

cs.RO↗

arXiv2024

Mudjacking: Patching Backdoor Vulnerabilities in Foundation Models

Foundation model has become the backbone of the AI ecosystem. In particular, a foundation model can be used as a general-purpose feature extractor to build various downstream classifiers. However, foundation models are vulnerable to backdoor attacks and a backdoored foundation model is a single-point-of-failure of the AI ecosystem, e.g., multiple downstream classifiers inherit the backdoor vulnerabilities simultaneously. In this work, we propose Mudjacking, the first method to patch foundation models to remove backdoors. Specifically, given a misclassified trigger-embedded input detected after a backdoored foundation model is deployed, Mudjacking adjusts the parameters of the foundation model to remove the backdoor. We formulate patching a foundation model as an optimization problem and propose a gradient descent based method to solve it. We evaluate Mudjacking on both vision and language foundation models, eleven benchmark datasets, five existing backdoor attacks, and thirteen adaptive backdoor attacks. Our results show that Mudjacking can remove backdoor from a foundation model while maintaining its utility.

cs.CR↗

arXiv2024

BronchoTrack: Airway Lumen Tracking for Branch-Level Bronchoscopic Localization

Localizing the bronchoscope in real time is essential for ensuring intervention quality. However, most existing methods struggle to balance between speed and generalization. To address these challenges, we present BronchoTrack, an innovative real-time framework for accurate branch-level localization, encompassing lumen detection, tracking, and airway association.To achieve real-time performance, we employ a benchmark lightweight detector for efficient lumen detection. We are the first to introduce multi-object tracking to bronchoscopic localization, mitigating temporal confusion in lumen identification caused by rapid bronchoscope movement and complex airway structures. To ensure generalization across patient cases, we propose a training-free detection-airway association method based on a semantic airway graph that encodes the hierarchy of bronchial tree structures.Experiments on nine patient datasets demonstrate BronchoTrack's localization accuracy of 85.64 \%, while accessing up to the 4th generation of airways.Furthermore, we tested BronchoTrack in an in-vivo animal study using a porcine model, where it successfully localized the bronchoscope into the 8th generation airway.Experimental evaluation underscores BronchoTrack's real-time performance in both satisfying accuracy and generalization, demonstrating its potential for clinical applications.

cs.CV↗

arXiv2024

DaFoEs: Mixing Datasets towards the generalization of vision-state deep-learning Force Estimation in Minimally Invasive Robotic Surgery

Precisely determining the contact force during safe interaction in Minimally Invasive Robotic Surgery (MIRS) is still an open research challenge. Inspired by post-operative qualitative analysis from surgical videos, the use of cross-modality data driven deep neural network models has been one of the newest approaches to predict sensorless force trends. However, these methods required for large and variable datasets which are not currently available. In this paper, we present a new vision-haptic dataset (DaFoEs) with variable soft environments for the training of deep neural models. In order to reduce the bias from a single dataset, we present a pipeline to generalize different vision and state data inputs for mixed dataset training, using a previously validated dataset with different setup. Finally, we present a variable encoder-decoder architecture to predict the forces done by the laparoscopic tool using single input or sequence of inputs. For input sequence, we use a recurrent decoder, named with the prefix R, and a new temporal sampling to represent the acceleration of the tool. During our training, we demonstrate that single dataset training tends to overfit to the training data domain, but has difficulties on translating the results across new domains. However, dataset mixing presents a good translation with a mean relative estimated force error of 5% and 12% for the recurrent and non-recurrent models respectively. Our method, also marginally increase the effectiveness of transformers for force estimation up to a maximum of ~15%, as the volume of available data is increase by 150%. In conclusion, we demonstrate that mixing experimental set ups for vision-state force estimation in MIRS is a possible approach towards the general solution of the problem.

cs.CV↗

arXiv2023

PWISeg: Point-based Weakly-supervised Instance Segmentation for Surgical Instruments

In surgical procedures, correct instrument counting is essential. Instance segmentation is a location method that locates not only an object's bounding box but also each pixel's specific details. However, obtaining mask-level annotations is labor-intensive in instance segmentation. To address this issue, we propose a novel yet effective weakly-supervised surgical instrument instance segmentation approach, named Point-based Weakly-supervised Instance Segmentation (PWISeg). PWISeg adopts an FCN-based architecture with point-to-box and point-to-mask branches to model the relationships between feature points and bounding boxes, as well as feature points and segmentation masks on FPN, accomplishing instrument detection and segmentation jointly in a single model. Since mask level annotations are hard to available in the real world, for point-to-mask training, we introduce an unsupervised projection loss, utilizing the projected relation between predicted masks and bboxes as supervision signal. On the other hand, we annotate a few pixels as the key pixel for each instrument. Based on this, we further propose a key pixel association loss and a key pixel distribution loss, driving the point-to-mask branch to generate more accurate segmentation predictions. To comprehensively evaluate this task, we unveil a novel surgical instrument dataset with manual annotations, setting up a benchmark for further research. Our comprehensive research trial validated the superior performance of our PWISeg. The results show that the accuracy of surgical instrument segmentation is improved, surpassing most methods of instance segmentation via weakly supervised bounding boxes. This improvement is consistently observed in our proposed dataset and when applied to the public HOSPI-Tools dataset.

cs.CV↗

arXiv2023

SurgPLAN: Surgical Phase Localization Network for Phase Recognition

Surgical phase recognition is crucial to providing surgery understanding in smart operating rooms. Despite great progress in automatic surgical phase recognition, most existing methods are still restricted by two problems. First, these methods cannot capture discriminative visual features for each frame and motion information with simple 2D networks. Second, the frame-by-frame recognition paradigm degrades the performance due to unstable predictions within each phase, termed as phase shaking. To address these two challenges, we propose a Surgical Phase LocAlization Network, named SurgPLAN, to facilitate a more accurate and stable surgical phase recognition with the principle of temporal detection. Specifically, we first devise a Pyramid SlowFast (PSF) architecture to serve as the visual backbone to capture multi-scale spatial and temporal features by two branches with different frame sampling rates. Moreover, we propose a Temporal Phase Localization (TPL) module to generate the phase prediction based on temporal region proposals, which ensures accurate and consistent predictions within each surgical phase. Extensive experiments confirm the significant advantages of our SurgPLAN over frame-by-frame approaches in terms of both accuracy and stability.

cs.CV↗

arXiv2023

10 Security and Privacy Problems in Large Foundation Models

Foundation models--such as GPT, CLIP, and DINO--have achieved revolutionary progress in the past several years and are commonly believed to be a promising approach for general-purpose AI. In particular, self-supervised learning is adopted to pre-train a foundation model using a large amount of unlabeled data. A pre-trained foundation model is like an ``operating system'' of the AI ecosystem. Specifically, a foundation model can be used as a feature extractor for many downstream tasks with little or no labeled training data. Existing studies on foundation models mainly focused on pre-training a better foundation model to improve its performance on downstream tasks in non-adversarial settings, leaving its security and privacy in adversarial settings largely unexplored. A security or privacy issue of a pre-trained foundation model leads to a single point of failure for the AI ecosystem. In this book chapter, we discuss 10 basic security and privacy problems for the pre-trained foundation models, including six confidentiality problems, three integrity problems, and one availability problem. For each problem, we discuss potential opportunities and challenges. We hope our book chapter will inspire future research on the security and privacy of foundation models.

cs.CR↗

arXiv2023

High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference validation

Quantum chemical calculations on atomistic systems have evolved into a standard approach to study molecular matter. These calculations often involve a significant amount of manual input and expertise although most of this effort could be automated, which would alleviate the need for expertise in software and hardware accessibility. Here, we present the AutoRXN workflow, an automated workflow for exploratory high-throughput lectronic structure calculations of molecular systems, in which (i) density functional theory methods are exploited to deliver minimum and transition-state structures and corresponding energies and properties, (ii) coupled cluster calculations are then launched for optimized structures to provide more accurate energy and property estimates, and (iii) multi-reference diagnostics are evaluated to back check the coupled cluster results and subject hem to automated multi-configurational calculations for potential multi-configurational cases. All calculations are carried out in a cloud environment and support massive computational campaigns. Key features of all omponents of the AutoRXN workflow are autonomy, stability, and minimum operator interference. We highlight the AutoRXN workflow at the example of an autonomous reaction mechanism exploration of the mode of action of a homogeneous catalyst for the asymmetric reduction of ketones.

physics.chem-ph↗

arXiv2023

PointCert: Point Cloud Classification with Deterministic Certified Robustness Guarantees

Point cloud classification is an essential component in many security-critical applications such as autonomous driving and augmented reality. However, point cloud classifiers are vulnerable to adversarially perturbed point clouds. Existing certified defenses against adversarial point clouds suffer from a key limitation: their certified robustness guarantees are probabilistic, i.e., they produce an incorrect certified robustness guarantee with some probability. In this work, we propose a general framework, namely PointCert, that can transform an arbitrary point cloud classifier to be certifiably robust against adversarial point clouds with deterministic guarantees. PointCert certifiably predicts the same label for a point cloud when the number of arbitrarily added, deleted, and/or modified points is less than a threshold. Moreover, we propose multiple methods to optimize the certified robustness guarantees of PointCert in three application scenarios. We systematically evaluate PointCert on ModelNet and ScanObjectNN benchmark datasets. Our results show that PointCert substantially outperforms state-of-the-art certified defenses even though their robustness guarantees are probabilistic.

cs.CR↗

arXiv2023

Implementation and performances of the IPbus protocol for the JUNO Large-PMT readout electronics

The Jiangmen Underground Neutrino Observatory (JUNO) is a large neutrino detector currently under construction in China. Thanks to the tight requirements on its optical and radio-purity properties, it will be able to perform leading measurements detecting terrestrial and astrophysical neutrinos in a wide energy range from tens of keV to hundreds of MeV. A key requirement for the success of the experiment is an unprecedented 3% energy resolution, guaranteed by its large active mass (20 kton) and the use of more than 20,000 20-inch photo-multiplier tubes (PMTs) acquired by high-speed, high-resolution sampling electronics located very close to the PMTs. As the Front-End and Read-Out electronics is expected to continuously run underwater for 30 years, a reliable readout acquisition system capable of handling the timestamped data stream coming from the Large-PMTs and permitting to simultaneously monitor and operate remotely the inaccessible electronics had to be developed. In this contribution, the firmware and hardware implementation of the IPbus based readout protocol will be presented, together with the performances measured on final modules during the mass production of the electronics.

physics.ins-det↗