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Honggang Qi

Publications and source records attributed to Honggang Qi.

At least 19 recordsLinked to original sources

GraSP-VL: Length as a Semantic Granularity Interface for Vision-Language Representations

Frozen vision-language embeddings contain signals at multiple semantic resolutions, from object identity to attributes, relations, and full-caption meaning, but they expose these signals through a fixed-length vector interface. We study whether embedding length can be turned into a controllable semantic access interface. We propose \textbf{GraSP-VL}, which learns a shared near-orthogonal prefix transform over frozen VLM embeddings. GraSP-VL instantiates a \textbf{Semantic Matryoshka} interface: short prefixes are assigned coarse semantic roles, while longer prefixes progressively expose finer language-grounded distinctions. Because the transform is shared across image and text embeddings and preserves full-dimensional geometry, prefix behavior changes without rewriting the original VLM space. On a 20,147-example COCO/Flickr30K annotation pool, GraSP-VL reaches a staircase score of 53.01 and hard-negative selectivity of 89.76, while keeping full-space drift below $10^{-6}$. It also transfers to SugarCrepe-clean with 86.03 object accuracy and 11.96 mean external emergence, and preserves full-dimensional zero-shot CIFAR-100 accuracy. These results show that frozen VLM embeddings can be reorganized into a truncatable semantic prefix interface rather than merely compressed.

cs.CV

CIR-DDG: backbone-agnostic residual correction of antibody-antigen affinity changes with explicit cross-chain geometry

Motivation: Accurate prediction of mutation-induced protein--protein binding free-energy changes is important for antibody affinity maturation, yet scarce labels and complex interface geometry limit generalization. Heterogeneous predictors may process three-dimensional complexes without preserving the cross-chain signals most relevant to a mutation in their final scalar output. Results: We introduce CIR-DDG, a lightweight residual adapter that combines a fixed base prediction with 22 interpretable descriptors of cross-chain distance, contact density and site--partner context. In complex-level five-fold evaluation on SKEMPI 2.0 measurements from 343 complexes, CIR-DDG improved all six tested backbones on antibody--antigen interface mutations: Spearman correlation increased by 0.0346--0.1296, while RMSE decreased by 0.0074--0.0408\kcalmol. Cross-validated probing, equal-capacity controls and feature ablations support the complementarity of explicit geometry. On an independent SARS-CoV-2 RBD--ACE2 deep-mutational-scan benchmark of 3669 substitutions, the fold-specific adapters transferred without any retraining: the absolute interface Spearman correlation increased by 0.026--0.081 for all four evaluable backbones, showing that the learned geometric correction generalizes beyond SKEMPI thermodynamic measurements. Availability and implementation: CIR-DDG is available at https://github.com/ecnuabmlab/CIR-ddG.

q-bio.QM

GraftSR: Grafting Authentic Textures for Real-World Image Super-Resolution via Identical-Instance Guidance

Diffusion-based real-world image super-resolution (SR) achieves impressive perceptual quality but inherently suffers from severe texture hallucination. To overcome this limitation, we propose GraftSR, a texture-reference-guided generative SR framework that leverages reference images of the identical instance to anchor the restoration of authentic textures. However, severe spatial misalignment between low-quality inputs and their references poses significant challenges, often leading to ambiguous transfer targets and background feature leakage. To address these issues, GraftSR employs a novel dual-mask reference guidance mechanism that systematically decouples the cross-view texture injection process. By explicitly isolating what authentic textures to extract from the reference and precisely localizing where to apply them within the target, GraftSR achieves robust texture transfer without relying on brittle spatial alignment. Furthermore, to bridge the critical gap in appropriate training data, we construct TexRefSR-141K, the first large-scale dataset providing high-quality reference tuples equipped with complementary spatial masks. Extensive experiments on our newly established benchmark, TexRefSR-Eval, demonstrate that GraftSR sets a new state-of-the-art. Notably, it reduces LPIPS by 20.2\% over top-performing baselines, achieving superior reference-faithful restoration.

cs.CV

BRIDGE: Behavior-Guided Residual Integration with Dual-Frequency Graph Evidence

Multimodal recommendation improves item representations by combining visual, textual, and collaborative signals, but stronger cross-view alignment does not always improve ranking. Our diagnostics on Amazon Baby show that direct consistency has an effective range: moderate alignment helps, while stronger alignment suppresses recommendation-specific variation. We also observe a clear spectral split: low-frequency components capture shared structure, whereas higher-frequency components retain more private ranking signal. Based on these findings, we propose BRIDGE, a behavior-guided residual integration framework built on dual-frequency graph evidence. BRIDGE separates the model into three parts: DFGE decomposes graph-smoothed ID, visual, and textual channels into spectral bands; BEN converts training-only co-user overlap into signed candidate evidence; and CRI applies that evidence only inside the base top-K candidate set during training and inference. This design keeps the multimodal backbone and localizes behavior evidence to candidate calibration. Experiments on Amazon Baby, Sports, and Electronics show that BRIDGE reaches 0.1128/0.1262/0.0778 Recall@20 and 0.0525/0.0594/0.0385 NDCG@20, outperforming baselines by up to 7.3% in Recall@20 and 14.9% in NDCG@20. Project materials are available at https://lizesheng13.github.io/bridge/.

cs.IR

Cross-Tokenizer On-Policy Distillation via Byte-Prefix Marginalization

Open-weight language models from different families exhibit complementary capabilities, motivating their consolidation into a compact student through on-policy distillation (OPD). However, full-vocabulary OPD typically assumes a shared tokenizer, while existing cross-tokenizer methods may discard teacher probability mass or assign it to student tokens with unrelated content. We introduce Byte-Prefix Marginalization (BPM), which re-expresses the teacher's next-token distribution over the student vocabulary in a shared byte space. Specifically, BPM assigns each teacher token's probability to the longest student token whose byte representation is a prefix of the teacher token's bytes, aggregates mass mapped to the same student token, and places otherwise unmatched mass in an explicit residual category. This produces a vocabulary-complete, byte-aligned, and mass-preserving target for dense OPD. The target exactly recovers the teacher-induced byte-prefix marginal when the relevant prefix does not span multiple teacher tokens (a condition satisfied at more than 99% of training positions) and uses a mass-preserving, chain-factorized lower bound otherwise. Across Qwen3-32B, GLM-Z1-9B-0414, and MiniMax-M2.7 as teachers, BPM consistently outperforms current cross-tokenizer methods on six mathematics and programming benchmarks, improving six-benchmark avg@8 by 3.7-6.6 points over the strongest baselines.

cs.LG

Skill-SD: Skill-Conditioned Self-Distillation for Multi-turn LLM Agents

Reinforcement learning (RL) has been widely used to train LLM agents for multi-turn interactive tasks, but its sample efficiency is severely limited by sparse rewards and long horizons. On-policy self-distillation (OPSD) alleviates this by providing dense token-level supervision from a privileged teacher that has access to ground-truth answers. However, such fixed privileged information cannot capture the diverse valid strategies in agent tasks, and naively combining OPSD with RL often leads to training collapse. To address these limitations, we introduce Skill-SD, a framework that turns the agent's own trajectories into dynamic training-only supervision. Completed trajectories are summarized into compact natural language skills that describe successful behaviors, mistakes, and workflows. These skills serve as dynamic privileged information conditioning only the teacher, while the student always acts under the plain task prompt and learns to internalize the guidance through distillation. To stabilize the training, we derive an importance-weighted reverse-KL loss to provide gradient-correct token-level distillation, and dynamically synchronize the teacher with the improving student. Experimental results on agentic benchmarks demonstrate that Skill-SD substantially outperforms the standard RL baseline, improving both vanilla GRPO (+14.0%/+10.9% on AppWorld/Sokoban) and vanilla OPD (+42.1%/+40.6%). Project page: https://k1xe.github.io/skill-sd/

cs.LG

A Dynamic Prognostic Prediction Method for Colorectal Cancer Liver Metastasis

Colorectal cancer liver metastasis (CRLM) exhibits high postoperative recurrence and pronounced prognostic heterogeneity, challenging individualized management. Existing prognostic approaches often rely on static representations from a single postoperative snapshot, and fail to jointly capture tumor spatial distribution, longitudinal disease dynamics, and multimodal clinical information, limiting predictive accuracy. We propose DyPro, a deep learning framework that infers postoperative latent trajectories via residual dynamic evolution. Starting from an initial patient representation, DyPro generates a 12-step sequence of trajectory snapshots through autoregressive residual updates and integrates them to predict recurrence and survival outcomes. On the MSKCC CRLM dataset, DyPro achieves strong discrimination under repeated stratified 5-fold cross-validation, reaching a C-index of 0.755 for OS and 0.714 for DFS, with OS AUC@1y of 0.920 and OS IBS of 0.143. DyPro provides quantitative risk cues to support adjuvant therapy planning and follow-up scheduling.

eess.IV

MEMTS: Internalizing Domain Knowledge via Parameterized Memory for Retrieval-Free Domain Adaptation of Time Series Foundation Models

While Time Series Foundation Models (TSFMs) have demonstrated exceptional performance in generalized forecasting, their performance often degrades significantly when deployed in real-world vertical domains characterized by temporal distribution shifts and domain-specific periodic structures. Current solutions are primarily constrained by two paradigms: Domain-Adaptive Pretraining (DAPT), which improves short-term domain fitting but frequently disrupts previously learned global temporal patterns due to catastrophic forgetting; and Retrieval-Augmented Generation (RAG), which incorporates external knowledge but introduces substantial retrieval overhead. This creates a severe scalability bottleneck that fails to meet the high-efficiency requirements of real-time stream processing. To break this impasse, we propose Memory for Time Series (MEMTS), a lightweight and plug-and-play method for retrieval-free domain adaptation in time series forecasting. The key component of MEMTS is a Knowledge Persistence Module (KPM), which internalizes domain-specific temporal dynamics, such as recurring seasonal patterns and trends into a compact set of learnable latent prototypes. In doing so, it transforms fragmented historical observations into continuous, parameterized knowledge representations. This paradigm shift enables MEMTS to achieve accurate domain adaptation with constant-time inference and near-zero latency, while effectively mitigating catastrophic forgetting of general temporal patterns, all without requiring any architectural modifications to the frozen TSFM backbone. Extensive experiments on multiple datasets demonstrate the SOTA performance of MEMTS.

cs.LG

Hints of Prompt: Enhancing Visual Representation for Multimodal LLMs in Autonomous Driving

In light of the dynamic nature of autonomous driving environments and stringent safety requirements, general MLLMs combined with CLIP alone often struggle to accurately represent driving-specific scenarios, particularly in complex interactions and long-tail cases. To address this, we propose the Hints of Prompt (HoP) framework, which introduces three key enhancements: Affinity hint to emphasize instance-level structure by strengthening token-wise connections, Semantic hint to incorporate high-level information relevant to driving-specific cases, such as complex interactions among vehicles and traffic signs, and Question hint to align visual features with the query context, focusing on question-relevant regions. These hints are fused through a Hint Fusion module, enriching visual representations by capturing driving-related representations with limited domain data, ensuring faster adaptation to driving scenarios. Extensive experiments confirm the effectiveness of the HoP framework, showing that it significantly outperforms previous state-of-the-art methods in all key metrics.

cs.CV

Dynamic Knowledge Exchange and Dual-diversity Review: Concisely Unleashing the Potential of a Multi-Agent Research Team

Scientific progress increasingly relies on effective collaboration among researchers, a dynamic that large language models (LLMs) have only begun to emulate. While recent LLM-based scientist agents show promise in autonomous scientific discovery, they often lack the interactive reasoning and evaluation mechanisms essential to real-world research. We propose IDVSCI (Internal Discussion and Vote SCIentists), a multi-agent framework built on LLMs that incorporates two key innovations: a Dynamic Knowledge Exchange mechanism enabling iterative feedback among agents, and a Dual-Diversity Review paradigm that simulates heterogeneous expert evaluation. These components jointly promote deeper reasoning and the generation of more creative and impactful scientific ideas. To evaluate the effectiveness and generalizability of our approach, we conduct experiments on two datasets: a widely used benchmark in computer science and a new dataset we introduce in the health sciences domain. Results show that IDVSCI consistently achieves the best performance across both datasets, outperforming existing systems such as AI Scientist and VIRSCI. These findings highlight the value of modeling interaction and peer review dynamics in LLM-based autonomous research.

cs.AI

HER2 Expression Prediction with Flexible Multi-Modal Inputs via Dynamic Bidirectional Reconstruction

In breast cancer HER2 assessment, clinical evaluation relies on combined H&E and IHC images, yet acquiring both modalities is often hindered by clinical constraints and cost. We propose an adaptive bimodal prediction framework that flexibly supports single- or dual-modality inputs through two core innovations: a dynamic branch selector activating modality completion or joint inference based on input availability, and a cross-modal GAN (CM-GAN) enabling feature-space reconstruction of missing modalities. This design dramatically improves H&E-only accuracy from 71.44% to 94.25%, achieves 95.09% with full dual-modality inputs, and maintains 90.28% reliability under single-modality conditions. The "dual-modality preferred, single-modality compatible" architecture delivers near-dual-modality accuracy without mandatory synchronized acquisition, offering a cost-effective solution for resource-limited regions and significantly improving HER2 assessment accessibility.

cs.MM

PupiNet: Seamless OCT-OCTA Interconversion Through Wavelet-Driven and Multi-Scale Attention Mechanisms

Optical Coherence Tomography (OCT) and Optical Coherence Tomography Angiography (OCTA) are key diagnostic tools for clinical evaluation and management of retinal diseases. Compared to traditional OCT, OCTA provides richer microvascular information, but its acquisition requires specialized sensors and high-cost equipment, creating significant challenges for the clinical deployment of hardware-dependent OCTA imaging methods. Given the technical complexity of OCTA image acquisition and potential mechanical artifacts, this study proposes a bidirectional image conversion framework called PupiNet, which accurately achieves bidirectional transformation between 3D OCT and 3D OCTA. The generator module of this framework innovatively integrates wavelet transformation and multi-scale attention mechanisms, significantly enhancing image conversion quality. Meanwhile, an Adaptive Discriminator Augmentation (ADA) module has been incorporated into the discriminator to optimize model training stability and convergence efficiency. To ensure clinical accuracy of vascular structures in the converted images, we designed a Vessel Structure Matcher (VSM) supervision module, achieving precise matching of vascular morphology between generated images and target images. Additionally, the Hierarchical Feature Calibration (HFC) module further guarantees high consistency of texture details between generated images and target images across different depth levels. To rigorously validate the clinical effectiveness of the proposed method, we conducted a comprehensive evaluation on a paired OCT-OCTA image dataset containing 300 eyes with various retinal pathologies. Experimental results demonstrate that PupiNet not only reliably achieves high-quality bidirectional transformation between the two modalities but also shows significant advantages in image fidelity, vessel structure preservation, and clinical usability.

eess.IV

4D-ACFNet: A 4D Attention Mechanism-Based Prognostic Framework for Colorectal Cancer Liver Metastasis Integrating Multimodal Spatiotemporal Features

Postoperative prognostic prediction for colorectal cancer liver metastasis (CRLM) remains challenging due to tumor heterogeneity, dynamic evolution of the hepatic microenvironment, and insufficient multimodal data fusion. To address these issues, we propose 4D-ACFNet, the first framework that synergistically integrates lightweight spatiotemporal modeling, cross-modal dynamic calibration, and personalized temporal prediction within a unified architecture. Specifically, it incorporates a novel 4D spatiotemporal attention mechanism, which employs spatiotemporal separable convolution (reducing parameter count by 41%) and virtual timestamp encoding to model the interannual evolution patterns of postoperative dynamic processes, such as liver regeneration and steatosis. For cross-modal feature alignment, Transformer layers are integrated to jointly optimize modality alignment loss and disentanglement loss, effectively suppressing scale mismatch and redundant interference in clinical-imaging data. Additionally, we design a dynamic prognostic decision module that generates personalized interannual recurrence risk heatmaps through temporal upsampling and a gated classification head, overcoming the limitations of traditional methods in temporal dynamic modeling and cross-modal alignment. Experiments on 197 CRLM patients demonstrate that the model achieves 100% temporal adjacency accuracy (TAA), with performance significantly surpassing existing approaches. This study establishes the first spatiotemporal modeling paradigm for postoperative dynamic monitoring of CRLM. The proposed framework can be extended to prognostic analysis of multi-cancer metastases, advancing precision surgery from "spatial resection" to "spatiotemporal cure."

eess.IV

RURANET++: An Unsupervised Learning Method for Diabetic Macular Edema Based on SCSE Attention Mechanisms and Dynamic Multi-Projection Head Clustering

Diabetic Macular Edema (DME), a prevalent complication among diabetic patients, constitutes a major cause of visual impairment and blindness. Although deep learning has achieved remarkable progress in medical image analysis, traditional DME diagnosis still relies on extensive annotated data and subjective ophthalmologist assessments, limiting practical applications. To address this, we present RURANET++, an unsupervised learning-based automated DME diagnostic system. This framework incorporates an optimized U-Net architecture with embedded Spatial and Channel Squeeze & Excitation (SCSE) attention mechanisms to enhance lesion feature extraction. During feature processing, a pre-trained GoogLeNet model extracts deep features from retinal images, followed by PCA-based dimensionality reduction to 50 dimensions for computational efficiency. Notably, we introduce a novel clustering algorithm employing multi-projection heads to explicitly control cluster diversity while dynamically adjusting similarity thresholds, thereby optimizing intra-class consistency and inter-class discrimination. Experimental results demonstrate superior performance across multiple metrics, achieving maximum accuracy (0.8411), precision (0.8593), recall (0.8411), and F1-score (0.8390), with exceptional clustering quality. This work provides an efficient unsupervised solution for DME diagnosis with significant clinical implications.

eess.IV

RetinaRegen: A Hybrid Model for Readability and Detail Restoration in Fundus Images

Fundus image quality is crucial for diagnosing eye diseases, but real-world conditions often result in blurred or unreadable images, increasing diagnostic uncertainty. To address these challenges, this study proposes RetinaRegen, a hybrid model for retinal image restoration that integrates a readability classifi-cation model, a Diffusion Model, and a Variational Autoencoder (VAE). Ex-periments on the SynFundus-1M dataset show that the proposed method achieves a PSNR of 27.4521, an SSIM of 0.9556, and an LPIPS of 0.1911 for the readability labels of the optic disc (RO) region. These results demonstrate superior performance in restoring key regions, offering an effective solution to enhance fundus image quality and support clinical diagnosis.

eess.IV

A Residual Multi-task Network for Joint Classification and Regression in Medical Imaging

Detection and classification of pulmonary nodules is a challenge in medical image analysis due to the variety of shapes and sizes of nodules and their high concealment. Despite the success of traditional deep learning methods in image classification, deep networks still struggle to perfectly capture subtle changes in lung nodule detection. Therefore, we propose a residual multi-task network (Res-MTNet) model, which combines multi-task learning and residual learning, and improves feature representation ability by sharing feature extraction layer and introducing residual connections. Multi-task learning enables the model to handle multiple tasks simultaneously, while the residual module solves the problem of disappearing gradients, ensuring stable training of deeper networks and facilitating information sharing between tasks. Res-MTNet enhances the robustness and accuracy of the model, providing a more reliable lung nodule analysis tool for clinical medicine and telemedicine.

eess.IV

RURA-Net: A general disease diagnosis method based on Zero-Shot Learning

The training of deep learning models relies on a large amount of labeled data. However, the high cost of medical labeling seriously hinders the development of deep learning in the medical field. Our study proposes a general disease diagnosis approach based on Zero-Shot Learning. The Siamese neural network is used to find similar diseases for the target diseases, and the U-Net segmentation model is used to accurately segment the key lesions of the disease. Finally, based on the ResNet-Agglomerative clustering algorithm, a clustering model is trained on a large number of sample data of similar diseases to obtain a approximate diagnosis of the target disease. Zero-Shot Learning of the target disease is then successfully achieved. To evaluate the validity of the model, we validated our method on a dataset of ophthalmic diseases in CFP modality. The external dataset was used to test its performance, and the accuracy=0.8395, precision=0.8094, recall=0.8463, F1 Score=0.8274, AUC=0.9226, which exceeded the indexes of most Few-Shot Learning and One-Shot Learning models. It proves that our method has great potential and reference value in the medical field, where annotation data is usually scarce and expensive to obtain.

cs.CV

DynSegNet:Dynamic Architecture Adjustment for Adversarial Learning in Segmenting Hemorrhagic Lesions from Fundus Images

The hemorrhagic lesion segmentation plays a critical role in ophthalmic diagnosis, directly influencing early disease detection, treatment planning, and therapeutic efficacy evaluation. However, the task faces significant challenges due to lesion morphological variability, indistinct boundaries, and low contrast with background tissues. To improve diagnostic accuracy and treatment outcomes, developing advanced segmentation techniques remains imperative. This paper proposes an adversarial learning-based dynamic architecture adjustment approach that integrates hierarchical U-shaped encoder-decoder, residual blocks, attention mechanisms, and ASPP modules. By dynamically optimizing feature fusion, our method enhances segmentation performance. Experimental results demonstrate a Dice coefficient of 0.6802, IoU of 0.5602, Recall of 0.766, Precision of 0.6525, and Accuracy of 0.9955, effectively addressing the challenges in fundus image hemorrhage segmentation.[* Corresponding author.]

cs.CV