arXiv subjects

Hongmin Cai

Publications and source records attributed to Hongmin Cai.

31 records · Page 2Linked to original sources

arXiv2024

Accelerate Neural Subspace-Based Reduced-Order Solver of Deformable Simulation by Lipschitz Optimization

Reduced-order simulation is an emerging method for accelerating physical simulations with high DOFs, and recently developed neural-network-based methods with nonlinear subspaces have been proven effective in diverse applications as more concise subspaces can be detected. However, the complexity and landscape of simulation objectives within the subspace have not been optimized, which leaves room for enhancement of the convergence speed. This work focuses on this point by proposing a general method for finding optimized subspace mappings, enabling further acceleration of neural reduced-order simulations while capturing comprehensive representations of the configuration manifolds. We achieve this by optimizing the Lipschitz energy of the elasticity term in the simulation objective, and incorporating the cubature approximation into the training process to manage the high memory and time demands associated with optimizing the newly introduced energy. Our method is versatile and applicable to both supervised and unsupervised settings for optimizing the parameterizations of the configuration manifolds. We demonstrate the effectiveness of our approach through general cases in both quasi-static and dynamics simulations. Our method achieves acceleration factors of up to 6.83 while consistently preserving comparable simulation accuracy in various cases, including large twisting, bending, and rotational deformations with collision handling. This novel approach offers significant potential for accelerating physical simulations, and can be a good add-on to existing neural-network-based solutions in modeling complex deformable objects.

cs.LG↗

arXiv2024

Efficient quaternion CUR method for low-rank approximation to quaternion matrix

The low-rank quaternion matrix approximation has been successfully applied in many applications involving signal processing and color image processing. However, the cost of quaternion models for generating low-rank quaternion matrix approximation is sometimes considerable due to the computation of the quaternion singular value decomposition (QSVD), which limits their application to real large-scale data. To address this deficiency, an efficient quaternion matrix CUR (QMCUR) method for low-rank approximation is suggested, which provides significant acceleration in color image processing. We first explore the QMCUR approximation method, which uses actual columns and rows of the given quaternion matrix, instead of the costly QSVD. Additionally, two different sampling strategies are used to sample the above-selected columns and rows. Then, the perturbation analysis is performed on the QMCUR approximation of noisy versions of low-rank quaternion matrices. Extensive experiments on both synthetic and real data further reveal the superiority of the proposed algorithm compared with other algorithms for getting low-rank approximation, in terms of both efficiency and accuracy.

math.NA↗

arXiv2024

The Radiation Oncology NLP Database

We present the Radiation Oncology NLP Database (ROND), the first dedicated Natural Language Processing (NLP) dataset for radiation oncology, an important medical specialty that has received limited attention from the NLP community in the past. With the advent of Artificial General Intelligence (AGI), there is an increasing need for specialized datasets and benchmarks to facilitate research and development. ROND is specifically designed to address this gap in the domain of radiation oncology, a field that offers many opportunities for NLP exploration. It encompasses various NLP tasks including Logic Reasoning, Text Classification, Named Entity Recognition (NER), Question Answering (QA), Text Summarization, and Patient-Clinician Conversations, each with a distinct focus on radiation oncology concepts and application cases. In addition, we have developed an instruction-tuning dataset consisting of over 20k instruction pairs (based on ROND) and trained a large language model, CancerChat. This serves to demonstrate the potential of instruction-tuning large language models within a highly-specialized medical domain. The evaluation results in this study could serve as baseline results for future research. ROND aims to stimulate advancements in radiation oncology and clinical NLP by offering a platform for testing and improving algorithms and models in a domain-specific context. The ROND dataset is a joint effort of multiple U.S. health institutions. The data is available at https://github.com/zl-liu/Radiation-Oncology-NLP-Database.

cs.CL↗

arXiv2023

Quaternion tensor left ring decomposition and application for color image inpainting

In recent years, tensor networks have emerged as powerful tools for solving large-scale optimization problems. One of the most promising tensor networks is the tensor ring (TR) decomposition, which achieves circular dimensional permutation invariance in the model through the utilization of the trace operation and equitable treatment of the latent cores. On the other hand, more recently, quaternions have gained significant attention and have been widely utilized in color image processing tasks due to their effectiveness in encoding color pixels by considering the three color channels as a unified entity. Therefore, in this paper, based on the left quaternion matrix multiplication, we propose the quaternion tensor left ring (QTLR) decomposition, which inherits the powerful and generalized representation abilities of the TR decomposition while leveraging the advantages of quaternions for color pixel representation. In addition to providing the definition of QTLR decomposition and an algorithm for learning the QTLR format, the paper further proposes a low-rank quaternion tensor completion (LRQTC) model and its algorithm for color image inpainting based on the defined QTLR decomposition. Finally, extensive experiments on color image inpainting demonstrate that the proposed LRQTC method is highly competitive.

cs.CV↗

arXiv2023

Exploring Multimodal Approaches for Alzheimer's Disease Detection Using Patient Speech Transcript and Audio Data

Alzheimer's disease (AD) is a common form of dementia that severely impacts patient health. As AD impairs the patient's language understanding and expression ability, the speech of AD patients can serve as an indicator of this disease. This study investigates various methods for detecting AD using patients' speech and transcripts data from the DementiaBank Pitt database. The proposed approach involves pre-trained language models and Graph Neural Network (GNN) that constructs a graph from the speech transcript, and extracts features using GNN for AD detection. Data augmentation techniques, including synonym replacement, GPT-based augmenter, and so on, were used to address the small dataset size. Audio data was also introduced, and WavLM model was used to extract audio features. These features were then fused with text features using various methods. Finally, a contrastive learning approach was attempted by converting speech transcripts back to audio and using it for contrastive learning with the original audio. We conducted intensive experiments and analysis on the above methods. Our findings shed light on the challenges and potential solutions in AD detection using speech and audio data.

eess.AS↗

arXiv2023

Differentiate ChatGPT-generated and Human-written Medical Texts

Background: Large language models such as ChatGPT are capable of generating grammatically perfect and human-like text content, and a large number of ChatGPT-generated texts have appeared on the Internet. However, medical texts such as clinical notes and diagnoses require rigorous validation, and erroneous medical content generated by ChatGPT could potentially lead to disinformation that poses significant harm to healthcare and the general public. Objective: This research is among the first studies on responsible and ethical AIGC (Artificial Intelligence Generated Content) in medicine. We focus on analyzing the differences between medical texts written by human experts and generated by ChatGPT, and designing machine learning workflows to effectively detect and differentiate medical texts generated by ChatGPT. Methods: We first construct a suite of datasets containing medical texts written by human experts and generated by ChatGPT. In the next step, we analyze the linguistic features of these two types of content and uncover differences in vocabulary, part-of-speech, dependency, sentiment, perplexity, etc. Finally, we design and implement machine learning methods to detect medical text generated by ChatGPT. Results: Medical texts written by humans are more concrete, more diverse, and typically contain more useful information, while medical texts generated by ChatGPT pay more attention to fluency and logic, and usually express general terminologies rather than effective information specific to the context of the problem. A BERT-based model can effectively detect medical texts generated by ChatGPT, and the F1 exceeds 95%.

cs.CL↗

arXiv2023

Fine-grained Domain Adaptive Crowd Counting via Point-derived Segmentation

Due to domain shift, a large performance drop is usually observed when a trained crowd counting model is deployed in the wild. While existing domain-adaptive crowd counting methods achieve promising results, they typically regard each crowd image as a whole and reduce domain discrepancies in a holistic manner, thus limiting further improvement of domain adaptation performance. To this end, we propose to untangle \emph{domain-invariant} crowd and \emph{domain-specific} background from crowd images and design a fine-grained domain adaption method for crowd counting. Specifically, to disentangle crowd from background, we propose to learn crowd segmentation from point-level crowd counting annotations in a weakly-supervised manner. Based on the derived segmentation, we design a crowd-aware domain adaptation mechanism consisting of two crowd-aware adaptation modules, i.e., Crowd Region Transfer (CRT) and Crowd Density Alignment (CDA). The CRT module is designed to guide crowd features transfer across domains beyond background distractions. The CDA module dedicates to regularising target-domain crowd density generation by its own crowd density distribution. Our method outperforms previous approaches consistently in the widely-used adaptation scenarios.

cs.CV↗

arXiv2023

AugGPT: Leveraging ChatGPT for Text Data Augmentation

Text data augmentation is an effective strategy for overcoming the challenge of limited sample sizes in many natural language processing (NLP) tasks. This challenge is especially prominent in the few-shot learning scenario, where the data in the target domain is generally much scarcer and of lowered quality. A natural and widely-used strategy to mitigate such challenges is to perform data augmentation to better capture the data invariance and increase the sample size. However, current text data augmentation methods either can't ensure the correct labeling of the generated data (lacking faithfulness) or can't ensure sufficient diversity in the generated data (lacking compactness), or both. Inspired by the recent success of large language models, especially the development of ChatGPT, which demonstrated improved language comprehension abilities, in this work, we propose a text data augmentation approach based on ChatGPT (named AugGPT). AugGPT rephrases each sentence in the training samples into multiple conceptually similar but semantically different samples. The augmented samples can then be used in downstream model training. Experiment results on few-shot learning text classification tasks show the superior performance of the proposed AugGPT approach over state-of-the-art text data augmentation methods in terms of testing accuracy and distribution of the augmented samples.

cs.CL↗

arXiv2023

Mask-guided BERT for Few Shot Text Classification

Transformer-based language models have achieved significant success in various domains. However, the data-intensive nature of the transformer architecture requires much labeled data, which is challenging in low-resource scenarios (i.e., few-shot learning (FSL)). The main challenge of FSL is the difficulty of training robust models on small amounts of samples, which frequently leads to overfitting. Here we present Mask-BERT, a simple and modular framework to help BERT-based architectures tackle FSL. The proposed approach fundamentally differs from existing FSL strategies such as prompt tuning and meta-learning. The core idea is to selectively apply masks on text inputs and filter out irrelevant information, which guides the model to focus on discriminative tokens that influence prediction results. In addition, to make the text representations from different categories more separable and the text representations from the same category more compact, we introduce a contrastive learning loss function. Experimental results on public-domain benchmark datasets demonstrate the effectiveness of Mask-BERT.

cs.CL↗

arXiv2023

Coarse-to-fine Knowledge Graph Domain Adaptation based on Distantly-supervised Iterative Training

Modern supervised learning neural network models require a large amount of manually labeled data, which makes the construction of domain-specific knowledge graphs time-consuming and labor-intensive. In parallel, although there has been much research on named entity recognition and relation extraction based on distantly supervised learning, constructing a domain-specific knowledge graph from large collections of textual data without manual annotations is still an urgent problem to be solved. In response, we propose an integrated framework for adapting and re-learning knowledge graphs from one coarse domain (biomedical) to a finer-define domain (oncology). In this framework, we apply distant-supervision on cross-domain knowledge graph adaptation. Consequently, no manual data annotation is required to train the model. We introduce a novel iterative training strategy to facilitate the discovery of domain-specific named entities and triples. Experimental results indicate that the proposed framework can perform domain adaptation and construction of knowledge graph efficiently.

cs.AI↗

arXiv2023

Uniform tensor clustering by jointly exploring sample affinities of various orders

Conventional clustering methods based on pairwise affinity usually suffer from the concentration effect while processing huge dimensional features yet low sample sizes data, resulting in inaccuracy to encode the sample proximity and suboptimal performance in clustering. To address this issue, we propose a unified tensor clustering method (UTC) that characterizes sample proximity using multiple samples' affinity, thereby supplementing rich spatial sample distributions to boost clustering. Specifically, we find that the triadic tensor affinity can be constructed via the Khari-Rao product of two affinity matrices. Furthermore, our early work shows that the fourth-order tensor affinity is defined by the Kronecker product. Therefore, we utilize arithmetical products, Khatri-Rao and Kronecker products, to mathematically integrate different orders of affinity into a unified tensor clustering framework. Thus, the UTC jointly learns a joint low-dimensional embedding to combine various orders. Finally, a numerical scheme is designed to solve the problem. Experiments on synthetic datasets and real-world datasets demonstrate that 1) the usage of high-order tensor affinity could provide a supplementary characterization of sample proximity to the popular affinity matrix; 2) the proposed method of UTC is affirmed to enhance clustering by exploiting different order affinities when processing high-dimensional data.

cs.LG↗

arXiv2020

Learning Common Harmonic Waves on Stiefel Manifold -- A New Mathematical Approach for Brain Network Analyses

Converging evidence shows that disease-relevant brain alterations do not appear in random brain locations, instead, its spatial pattern follows large scale brain networks. In this context, a powerful network analysis approach with a mathematical foundation is indispensable to understand the mechanism of neuropathological events spreading throughout the brain. Indeed, the topology of each brain network is governed by its native harmonic waves, which are a set of orthogonal bases derived from the Eigen-system of the underlying Laplacian matrix. To that end, we propose a novel connectome harmonic analysis framework to provide enhanced mathematical insights by detecting frequency-based alterations relevant to brain disorders. The backbone of our framework is a novel manifold algebra appropriate for inference across harmonic waves that overcomes the limitations of using classic Euclidean operations on irregular data structures. The individual harmonic difference is measured by a set of common harmonic waves learned from a population of individual Eigen systems, where each native Eigen-system is regarded as a sample drawn from the Stiefel manifold. Specifically, a manifold optimization scheme is tailored to find the common harmonic waves which reside at the center of Stiefel manifold. To that end, the common harmonic waves constitute the new neuro-biological bases to understand disease progression. Each harmonic wave exhibits a unique propagation pattern of neuro-pathological burdens spreading across brain networks. The statistical power of our novel connectome harmonic analysis approach is evaluated by identifying frequency-based alterations relevant to Alzheimer's disease, where our learning-based manifold approach discovers more significant and reproducible network dysfunction patterns compared to Euclidian methods.

eess.IV↗

arXiv2020

Integrating Tensor Similarity to Enhance Clustering Performance

The performance of most the clustering methods hinges on the used pairwise affinity, which is usually denoted by a similarity matrix. However, the pairwise similarity is notoriously known for its vulnerability of noise contamination or the imbalance in samples or features, and thus hinders accurate clustering. To tackle this issue, we propose to use information among samples to boost the clustering performance. We proved that a simplified similarity for pairs, denoted by a fourth order tensor, equals to the Kronecker product of pairwise similarity matrices under decomposable assumption, or provide complementary information for which the pairwise similarity missed under indecomposable assumption. Then a high order similarity matrix is obtained from the tensor similarity via eigenvalue decomposition. The high order similarity capturing spatial information serves as a robust complement for the pairwise similarity. It is further integrated with the popular pairwise similarity, named by IPS2, to boost the clustering performance. Extensive experiments demonstrated that the proposed IPS2 significantly outperformed previous similarity-based methods on real-world datasets and it was capable of handling the clustering task over under-sampled and noisy datasets.

cs.LG↗