arXiv subjects

Hongqian Niu

Publications and source records attributed to Hongqian Niu.

3 recordsLinked to original sources

arXiv2026

Can Generative Artificial Intelligence Survive Data Contamination? Theoretical Guarantees under Contaminated Recursive Training

As artificial intelligence (AI)-generated content proliferates, models are increasingly trained on their own outputs, risking progressive degradation or collapse. In this article, we provide the first positive, rigorous theoretical results, to the best of our knowledge, showing that under model-agnostic mild conditions, the model converges to the true data-generating distribution. The convergence rate is the minimum of the model's intrinsic rate and the fraction of real data at each training iteration, revealing a phase transition between data-limited and model-limited regimes. We further show that, for biased real data, correcting the bias prevents the persistence and amplification of early bias over training iteration. Extensive experiments across simulations, real images and texts validate our theoretical framework, establishing quantitative conditions for long-term AI stability in contaminated environments.

cs.LG↗

arXiv2026

Incorporating LLM Embeddings for Variation Across the Human Genome

Recent advances in large language model (LLM) embeddings have enabled powerful representations for biological data, but most applications to date focus on gene-level information. We present one of the first systematic frameworks to generate genetic variant-level embeddings across the entire human genome. Using curated annotations from FAVOR, ClinVar, and the GWAS Catalog, we construct functional text descriptions for 8.9 billion possible variants and generated embeddings at three scales: 1.5 million HapMap3/MEGA variants, 90 million imputed UK Biobank (UKB) variants, and 9 billion all possible variants. Embeddings were produced using general purpose models including both OpenAI's text-embedding-3-large and the open-source Qwen3-Embedding-0.6B models. Baseline quality control experiments demonstrate high predictive accuracy for variant-level properties, validating the embeddings as structured representations of genomic variation. We further apply them to real-world embedding-augmented genetic risk predictions that demonstrate the performance of using LLM embeddings in polygenic risk score (PRS) style predictions over the UK Biobank cohort data. These resources, publicly available on Hugging Face, provide a foundation for advancing large-scale genomic discovery and precision medicine.

stat.AP↗

arXiv2025

Deep Generative Models: Complexity, Dimensionality, and Approximation

Generative networks have shown remarkable success in learning complex data distributions, particularly in generating high-dimensional data from lower-dimensional inputs. While this capability is well-documented empirically, its theoretical underpinning remains unclear. One common theoretical explanation appeals to the widely accepted manifold hypothesis, which suggests that many real-world datasets, such as images and signals, often possess intrinsic low-dimensional geometric structures. Under this manifold hypothesis, it is widely believed that to approximate a distribution on a $d$-dimensional Riemannian manifold, the latent dimension needs to be at least $d$ or $d+1$. In this work, we show that this requirement on the latent dimension is not necessary by demonstrating that generative networks can approximate distributions on $d$-dimensional Riemannian manifolds from inputs of any arbitrary dimension, even lower than $d$, taking inspiration from the concept of space-filling curves. This approach, in turn, leads to a super-exponential complexity bound of the deep neural networks through expanded neurons. Our findings thus challenge the conventional belief on the relationship between input dimensionality and the ability of generative networks to model data distributions. This novel insight not only corroborates the practical effectiveness of generative networks in handling complex data structures, but also underscores a critical trade-off between approximation error, dimensionality, and model complexity.

cs.LG↗