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Hotaka Kaji

Publications and source records attributed to Hotaka Kaji.

2 recordsLinked to original sources

Circadian output network can buffer period variability

Circadian rhythms are biological oscillations that govern 24-hour physiological and behavioral processes across most organisms. Recent bioimaging studies have revealed that even individual cells can exhibit circadian rhythms. The period of cellular oscillations can fluctuate due to molecular noise in the circadian clock machinery. Whether regulatory networks downstream of the clock amplify or attenuate clock-derived period fluctuations remains poorly understood. In this study, we numerically observed period variability in a self-sustained oscillator coupled to an output network. Our numerical calculations demonstrated that a serial pathway does not merely relay timing signals but actively shapes rhythmic reliability. The extent of this reduction depended on parameters of both the clock and output systems. For more complex output networks, the shortest-path length from the core oscillator was a major determinant of increased oscillation precision. This noise-buffering effect saturated in long cascades. These results suggest the existence of an intrinsic precision-enhancing mechanism embedded within circadian output networks.

q-bio.MN

Enhanced precision of circadian rhythm by output system

Circadian rhythms are biological rhythms of approximately 24 h that persist even under constant conditions without environmental daily cues. The molecular circadian clock machinery generates the physiological rhythms, which can be transmitted into the downstream output system. Owing to the stochastic nature of the biochemical reactions, the oscillation period of circadian rhythms exhibited by individual organisms or cells is not constant on a daily basis with variations as high as 10 % in terms of the coefficient of variation. Although the fluctuations in circadian rhythm is measured through a reporter such as bioluminescence or fluorescence, experimentally confirming whether the fluctuations found in the reporter system are the same as those in the clock itself is challenging. This study numerically and analytically investigated a coupled system of a circadian clock and its output system, and then compared the fluctuations in the oscillation period of the two systems. We found that the amount of fluctuation in the output system is smaller than that in the circadian clock when the degradation rate of the molecules responsible for the output system was at typical values. The results obtained imply that the output system improves the accuracy of the circadian rhythm without the need for any special denoising processes.

q-bio.MN