arXiv subjects

Howard A. Stone

Publications and source records attributed to Howard A. Stone.

At least 73 records · Page 4Linked to original sources

arXiv2020

Forced Imbibition in Stratified Porous Media

Imbibition plays a central role in diverse energy, environmental, and industrial processes. In many cases, the medium has multiple parallel strata of different permeabilities; however, how this stratification impacts imbibition is poorly understood. We address this gap in knowledge by directly visualizing forced imbibition in three-dimensional (3D) porous media with two parallel strata. We find that imbibition is spatially heterogeneous: for small capillary number Ca, the wetting fluid preferentially invades the fine stratum, while for Ca above a threshold value, the fluid instead preferentially invades the coarse stratum. This threshold value depends on the medium geometry, the fluid properties, and the presence of residual wetting films in the pore space. These findings are well described by a linear stability analysis that incorporates crossflow between the strata. Thus, our work provides quantitative guidelines for predicting and controlling flow in stratified porous media.

physics.flu-dyn↗

arXiv2020

Speech can produce jet-like transport relevant to asymptomatic spreading of virus

Many scientific reports document that asymptomatic and presymptomatic individuals contribute to the spread of COVID-19, probably during conversations in social interactions. Droplet emission occurs during speech, yet few studies document the flow to provide the transport mechanism. This lack of understanding prevents informed public health guidance for risk reduction and mitigation strategies, e.g. the "six-foot rule". Here we analyze flows during breathing and speaking, including phonetic features, using order-of-magnitudes estimates, numerical simulations, and laboratory experiments. We document the spatio-temporal structure of the expelled air flow. Phonetic characteristics of plosive sounds like 'P' lead to enhanced directed transport, including jet-like flows that entrain the surrounding air. We highlight three distinct temporal scaling laws for the transport distance of exhaled material including (i) transport over a short distance ($<$ 0.5 m) in a fraction of a second, with large angular variations due to the complexity of speech, (ii) a longer distance, approximately 1 m, where directed transport is driven by individual vortical puffs corresponding to plosive sounds, and (iii) a distance out to about 2 m, or even further, where sequential plosives in a sentence, corresponding effectively to a train of puffs, create conical, jet-like flows. The latter dictates the long-time transport in a conversation. We believe that this work will inform thinking about the role of ventilation, aerosol transport in disease transmission for humans and other animals, and yield a better understanding of linguistic aerodynamics, i.e., aerophonetics.

physics.flu-dyn↗

arXiv2020

CO$_2$-driven diffusiophoresis for removal of bacteria

We investigate CO$_2$-driven diffusiophoresis of colloidal particles and bacterial cells in a Hele-Shaw geometry. Combining experiments and a model, we understand the characteristic length and time scales of CO$_2$-driven diffusiophoresis in relation to system dimensions and CO$_2$ diffusivity. Directional migration of wild-type V. cholerae and a mutant lacking flagella, as well as S. aureus and P. aeruginosa, near a dissolving CO$_2$ source shows that diffusiophoresis of bacteria is achieved independent of cell shape and Gram stain. Long-time experiments suggest possible applications for bacterial diffusiophoresis to cleaning systems or anti-biofouling surfaces.

cond-mat.soft↗

arXiv2020

A hydrodynamic instability drives protein droplet formation on microtubules to nucleate branches

Liquid-liquid phase separation occurs not only in bulk liquid, but also on surfaces. In physiology, the nature and function of condensates on cellular structures remain unexplored. Here, we study how the condensed protein TPX2 behaves on microtubules to initiate branching microtubule nucleation, which is critical for spindle assembly in eukaryotic cells. Using fluorescence, electron, and atomic force microscopies and hydrodynamic theory, we show that TPX2 on a microtubule reorganizes according to the Rayleigh-Plateau instability, like dew droplets patterning a spider web. After uniformly coating microtubules, TPX2 forms regularly spaced droplets from which branches nucleate. Droplet spacing increases with greater TPX2 concentration. A stochastic model shows that droplets make branching nucleation more efficient by confining the space along the microtubule where multiple necessary factors colocalize to nucleate a branch.

physics.bio-ph↗

arXiv2020

Particle motion nearby rough surfaces

We study the hydrodynamic coupling between particles and solid, rough boundaries characterized by random surface textures. Using the Lorentz reciprocal theorem, we derive analytical expressions for the grand mobility tensor of a spherical particle and find that roughness-induced velocities vary nonmonotonically with the characteristic wavelength of the surface. In contrast to sedimentation near a planar wall, our theory predicts continuous particle translation transverse and perpendicular to the applied force. Most prominently, this motion manifests itself in a variance of particle displacements that grows quadratically in time along the direction of the force. This increase is rationalized by surface roughness generating particle sedimentation closer to or farther from the surface, which entails a significant variability of settling velocities.

physics.flu-dyn↗

arXiv2020

Stability of force-driven shear flows in nonequilibrium molecular simulations with periodic boundaries

We analyze the hydrodynamic stability of force-driven parallel shear flows in nonequilibrium molecular simulations with three-dimensional periodic boundary conditions. We show that flows simulated in this way can be linearly unstable, and we derive an expression for the critical Reynolds number as a function of the geometric aspect ratio of the simulation domain. Approximate periodic extensions of Couette and Poiseuille flows are unstable at Reynolds numbers two orders of magnitude smaller than their aperiodic equivalents because the periodic boundaries impose fundamentally different constraints on the flow. This instability has important implications for simulating shear rheology and for designing nonequilibrium simulation methods that are compatible with periodic boundary conditions.

physics.flu-dyn↗

arXiv2020

Harnessing elasticity to generate self-oscillation via an electrohydrodynamic instability

Under a steady DC electric field of sufficient strength, a weakly conducting dielectric sphere in a dielectric solvent with higher conductivity can undergo spontaneous spinning (Quincke rotation) through a pitchfork bifurcation. We design an object composed of a dielectric sphere and an elastic filament. By solving an elasto-electro-hydrodynamic (EEH) problem numerically, we uncover an EEH instability exhibiting diverse dynamic responses. Varying the bending stiffness of the filament, the composite object displays three behaviours: a stationary state, undulatory swimming and steady spinning, where the swimming results from a self-oscillatory instability through a Hopf bifurcation. By conducting a linear stability analysis incorporating an elastohydrodynamic model, we theoretically predict the growth rates and critical conditions, which agree well with the numerical counterparts. We also propose a reduced model system consisting of a minimal elastic structure which reproduces the EEH instability. The elasto-viscous response of the composite structure is able to transform the pitchfork bifurcation into a Hopf bifurcation, leading to self-oscillation. Our results imply a new way of harnessing elastic media to engineer self-oscillations, and more generally, to manipulate and diversify the bifurcations and the corresponding instabilities. These ideas will be useful in designing soft, environmentally adaptive machines.

cond-mat.soft↗

arXiv2019

Symmetrization of Thin Free-Standing Liquid Films via Capillary-Driven Flow

We present experiments to study the relaxation of a nano-scale cylindrical perturbation at one of the two interfaces of a thin viscous free-standing polymeric film. Driven by capillarity, the film flows and evolves towards equilibrium by first symmetrizing the perturbation between the two interfaces, and eventually broadening the perturbation. A full-Stokes hydrodynamic model is presented which accounts for both the vertical and lateral flows, and which highlights the symmetry in the system. The symmetrization time is found to depend on the membrane thickness, surface tension, and viscosity.

cond-mat.soft↗

arXiv2019

Non-uniform growth and surface friction determine bacterial biofilm morphology on soft substrates

During development, organisms acquire three-dimensional shapes with important physiological consequences. While the basic mechanisms underlying morphogenesis are known in eukaryotes, it is often difficult to manipulate them in vivo. To circumvent this issue, here we present a study of developing Vibrio cholerae biofilms grown on agar substrates in which the spatiotemporal morphological patterns were altered by varying the agar concentration. Expanding biofilms are initially flat, but later experience a mechanical instability and become wrinkled. Whereas the peripheral region develops ordered radial stripes, the central region acquires a zigzag herringbone-like wrinkle pattern. Depending on the agar concentration, the wrinkles initially appear either in the peripheral region and propagate inward (low agar concentration) or in the central region and propagate outward (high agar concentration). To understand these experimental observations, we developed a model that considers diffusion of nutrients and their uptake by bacteria, bacterial growth/biofilm matrix production, mechanical deformation of both the biofilm and the agar, and the friction between them. Our model demonstrates that depletion of nutrients beneath the central region of the biofilm results in radially-dependent growth profiles, which in turn, produce anisotropic stresses that dictate the morphology of wrinkles. Furthermore, we predict that increasing surface friction (agar concentration) reduces stress anisotropy and shifts the location of the maximum compressive stress, where the wrinkling instability first occurs, toward the center of the biofilm, in agreement with our experimental observations. Our results are broadly applicable to bacterial biofilms with similar morphologies and also provide insight into how other bacterial biofilms form distinct wrinkle patterns.

physics.bio-ph↗

arXiv2019

Propulsion driven by self-oscillation via an electrohydrodynamic instability

Oscillations of flagella and cilia play an important role in biology, which motivates the idea of functional mimicry as part of bio-inspired applications. Nevertheless, it still remains challenging to drive their artificial counterparts to oscillate via a steady, homogeneous stimulus. Combining theory and simulations, we demonstrate a strategy to achieve this goal by using an elasto-electro-hydrodynamic instability. In particular, we show that applying a uniform DC electric field can produce self-oscillatory motion of a microrobot composed of a dielectric particle and an elastic filament. Upon tuning the electric field and filament elasticity, the microrobot exhibits three distinct behaviors: a stationary state, undulatory swimming and steady spinning, where the swimming behavior stems from an instability emerging through a Hopf bifurcation. Our results imply the feasibility of engineering self-oscillations by leveraging the elasto-viscous response to control the type of bifurcation and the form of instability. We anticipate that our strategy will be useful in a broad range of applications imitating self-oscillatory natural phenomena and biological processes.

cond-mat.soft↗

arXiv2019

Rotation of a low-Reynolds-number watermill: theory and simulations

Recent experiments have demonstrated that small-scale rotary devices installed in a microfluidic channel can be driven passively by the underlying flow alone without resorting to conventionally applied magnetic or electric fields. In this work, we conduct a theoretical and numerical study on such a flow-driven "watermill" at low Reynolds number, focusing on its hydrodynamic features. We model the watermill by a collection of equally-spaced rigid rods. Based on the classical resistive force (RF) theory and direct numerical simulations, we compute the watermill's instantaneous rotational velocity as a function of its rod number $N$, position and orientation. When $N \geq 4$, the RF theory predicts that the watermill's rotational velocity is independent of $N$ and its orientation, implying the full rotational symmetry (of infinity order), even though the geometrical configuration exhibits a lower-fold rotational symmetry; the numerical solutions including hydrodynamic interactions show a weak dependence on $N$ and the orientation. In addition, we adopt a dynamical system approach to identify the equilibrium positions of the watermill and analyse their stability. We further compare the theoretically and numerically derived rotational velocities, which agree with each other in general, while considerable discrepancy arises in certain configurations owing to the hydrodynamic interactions neglected by the RF theory. We confirm this conclusion by employing the RF-based asymptotic framework incorporating hydrodynamic interactions for a simpler watermill consisting of two or three rods and we show that accounting for hydrodynamic interactions can significantly enhance the accuracy of the theoretical predictions.

physics.flu-dyn↗

arXiv2019

Representative subsampling of sedimenting blood

It is often necessary to extract a small amount of a suspension, such as blood, from a larger sample of the same material for the purposes of diagnostics, testing or imaging. A practical challenge is that blood sediments noticeably on the time scale of a few minutes, making a representative subsampling of the original sample challenging. Guided by experimental data, we develop a Kynch sedimentation model to discuss design considerations that ensure a representative subsampling of blood for the entire range of physiologically relevant hematocrit over a specified time of interest. Additionally, we show that this design may be modified to exploit the sedimentation and subsample either higher or lower hematocrit relative to that of the original sample. Thus, our method provides a simple tool to either concentrate or dilute small quantities of blood or other sedimenting suspensions.

physics.flu-dyn↗

arXiv2019

Motion of hydrodynamically interacting active particles

We develop a general hydrodynamic theory describing a system of interacting actively propelling particles of arbitrary shape suspended in a viscous fluid. We model the active part of the particle motion using a slip velocity prescribed on the otherwise rigid particle surfaces. We introduce the general framework for particle rotations and translations by applying the Lorentz reciprocal theorem for a collection of mobile particles with arbitrary surface slip. We then develop an approximate theory applicable to widely separated spheres, including hydrodynamic interactions up to the level of force quadrupoles. We apply our theory to a general example involving a prescribed slip velocity, and a specific case concerning the autonomous motion of chemically active particles moving by diffusiophoresis due to self-generated chemical gradients.

physics.flu-dyn↗

arXiv2018

Uniform coating of self-assembled non-iridescent colloidal nanostructures using Marangoni effects and polymers

Colloidal crystals exhibit structural color without any color pigment due to the crystals' periodic nanostructure, which can interfere with visible light. This crystal structure is iridescent as the resulting color changes with the viewing or illumination angle, which limits its use for printing or displays. To eliminate the iridescent property, it is important to make the packing of the colloidal nanoparticles disordered. Here, we introduce a drop-casting method where a droplet of a water- ethanol mixture containing monodisperse polymer-coated silica nanoparticles creates a relatively uniform and non-iridescent deposit after the droplet evaporates completely on a heated substrate. The uniformity is caused by a thermal Marangoni flow and fast evaporation effects due to the heated substrate, whereas non-iridescence is the outcome of short-range-ordered packing of nanoparticles by depletion attraction and friction effects produced by polymer brushes. We show that the colors of the final deposits from individual droplets remain unchanged while the viewing angle is varied under ambient light. We expect that the coating method is compatible with ink-jet printing and the uniformly coated self-assembled non-iridescent nanostructures have potential for color displays using reflection mode and other optical devices.

cond-mat.soft↗

arXiv2018

A reciprocal theorem for the prediction of the normal force induced on a particle translating parallel to an elastic membrane

When an elastic object is dragged through a viscous fluid tangent to a rigid boundary, it experiences a lift force perpendicular to its direction of motion. An analogous lift mechanism occurs when a rigid symmetric object translates parallel to an elastic interface or a soft substrate. The induced lift force is attributed to an elastohydrodynamic coupling that arises from the breaking of the flow reversal symmetry induced by the elastic deformation of the translating object or the interface. Here we derive explicit analytical expressions for the quasi-steady state lift force exerted on a rigid spherical particle translating parallel to a finite-sized membrane exhibiting a resistance toward both shear and bending. Our analytical approach proceeds through the application of the Lorentz reciprocal theorem so as to obtain the solution of the flow problem using a perturbation technique for small deformations of the membrane. We find that the shear-related contribution to the normal force leads to an attractive interaction between the particle and the membrane. This emerging attractive force decreases quadratically with the system size to eventually vanish in the limit of an infinitely-extended membrane. In contrast, membrane bending leads to a repulsive interaction whose effect becomes more pronounced upon increasing the system size, where the lift force is found to diverge logarithmically for an infinitely-large membrane. The unphysical divergence of the bending-induced lift force can be rendered finite by regularizing the solution with a cut-off length beyond which the bending forces become subdominant to an external body force.

physics.flu-dyn↗

arXiv2018

Surfing its own wave: hydroelasticity of a particle near a membrane

We show using theory and experiments that a small particle moving along an elastic membrane through a viscous fluid is repelled from the membrane due to hydro-elastic forces. The viscous stress field produces an elastic disturbance leading to particle-wave coupling. We derive an analytic expression for the particle trajectory in the lubrication limit, bypassing the construction of the detailed velocity and pressure fields. The normal force is quadratic in the parallel speed, and is a function of the tension and bending resistance of the membrane. Experimentally, we measure the normal displacement of spheres sedimenting along an elastic membrane and find quantitative agreement with the theoretical predictions with no fitting parameters. We experimentally demonstrate the effect to be strong enough for particle separation and sorting. We discuss the significance of these results for bio-membranes and propose our model for membrane elasticity measurements.

cond-mat.soft↗

arXiv2018

Verticalization of bacterial biofilms

Biofilms are communities of bacteria adhered to surfaces. Recently, biofilms of rod-shaped bacteria were observed at single-cell resolution and shown to develop from a disordered, two-dimensional layer of founder cells into a three-dimensional structure with a vertically-aligned core. Here, we elucidate the physical mechanism underpinning this transition using a combination of agent-based and continuum modeling. We find that verticalization proceeds through a series of localized mechanical instabilities on the cellular scale. For short cells, these instabilities are primarily triggered by cell division, whereas long cells are more likely to be peeled off the surface by nearby vertical cells, creating an "inverse domino effect". The interplay between cell growth and cell verticalization gives rise to an exotic mechanical state in which the effective surface pressure becomes constant throughout the growing core of the biofilm surface layer. This dynamical isobaricity determines the expansion speed of a biofilm cluster and thereby governs how cells access the third dimension. In particular, theory predicts that a longer average cell length yields more rapidly expanding, flatter biofilms. We experimentally show that such changes in biofilm development occur by exploiting chemicals that modulate cell length.

physics.bio-ph↗

arXiv2018

Flow rate--pressure drop relation for deformable shallow microfluidic channels

Laminar flow in devices fabricated from soft materials causes deformation of the passage geometry, which affects the flow rate--pressure drop relation. For a given pressure drop, in channels with narrow rectangular cross-section, the flow rate varies as the cube of the channel height, so deformation can produce significant quantitative effects, including nonlinear dependence on the pressure drop [{Gervais, T., El-Ali, J., Günther, A. \& Jensen, K.\ F.}\ 2006 Flow-induced deformation of shallow microfluidic channels.\ \textit{Lab Chip} \textbf{6}, 500--507]. Gervais et. al. proposed a successful model of the deformation-induced change in the flow rate by heuristically coupling a Hookean elastic response with the lubrication approximation for Stokes flow. However, their model contains a fitting parameter that must be found for each channel shape by performing an experiment. We present a perturbation approach for the flow rate--pressure drop relation in a shallow deformable microchannel using the theory of isotropic quasi-static plate bending and the Stokes equations under a lubrication approximation (specifically, the ratio of the channel's height to its width and of the channel's height to its length are both assumed small). Our result contains no free parameters and confirms Gervais et. al.'s observation that the flow rate is a quartic polynomial of the pressure drop. The derived flow rate--pressure drop relation compares favorably with experimental measurements.

physics.flu-dyn↗