arXiv subjects

Howard J. Aizenstein

Publications and source records attributed to Howard J. Aizenstein.

4 recordsLinked to original sources

arXiv2026

MRecover: A Conditional Generative Model for Recovering Motion-Corrupted MR images Using AI Generated Contrast

Hippocampal subfield segmentation requires high-resolution T2w turbo spin echo (TSE) MRI, yet this sequence is susceptible to motion artifacts, leading to substantial data loss. We developed a conditional generative model (MRecover) that synthesizes routinely acquired T1w images to create TSE images with autoregressive slice conditioning for volumetric consistency. Trained on 7T MRI data (n=577), the model achieved high in-domain fidelity (n=148, SSIM=0.84, FSIM=0.94) and generalized well to out-of-domain 3T data: subfield volumes from synthesized and the as-acquired images closely matched: (n=416, r=0.87-0.97) and yielded 31.8% more analyzable subjects in the motion-affected ADNI3 dataset after quality control (593 vs 450). The synthesized images also achieved larger effect sizes due to increasing the sample size for diagnostic group differences in hippocampal subfield atrophy (whole hippocampus $ε^2$= 0.121-0.100 vs. 0.086-0.062, left-right hemispheres). Project page: https://jinghangli98.github.io/MRecover/

cs.CV↗

arXiv2024

Leveraging The Finite States of Emotion Processing to Study Late-Life Mental Health

Traditional approaches in mental health research apply General Linear Models (GLM) to describe the longitudinal dynamics of observed psycho-behavioral measurements (questionnaire summary scores). Similarly, GLMs are also applied to characterize relationships between neurobiological measurements (regional fMRI signals) and perceptual stimuli or other regional signals. While these methods are useful for exploring linear correlations among the isolated signals of those constructs (i.e., summary scores or fMRI signals), these classical frameworks fall short in providing insights into the comprehensive system-level dynamics underlying observable changes. Hidden Markov Models (HMM) are a statistical model that enable us to describe the sequential relations among multiple observable constructs, and when applied through the lens of Finite State Automata (FSA), can provide a more integrated and intuitive framework for modeling and understanding the underlying controller (the prescription for how to respond to inputs) that fundamentally defines any system, as opposed to linearly correlating output signals produced by the controller. We present a simple and intuitive HMM processing pipeline vcHMM (See Preliminary Data) that highlights FSA theory and is applicable for both behavioral analysis of questionnaire data and fMRI data. HMMs offer theoretic promise as they are computationally equivalent to the FSA, the control processor of a Turing Machine (TM) The dynamic programming Viterbi algorithm is used to leverage the HMM model. It efficiently identifies the most likely sequence of hidden states. The vcHMM pipeline leverages this grammar to understand how behavior and neural activity relate to depression.

cs.LG↗

arXiv2024

wmh_seg: Transformer based U-Net for Robust and Automatic White Matter Hyperintensity Segmentation across 1.5T, 3T and 7T

White matter hyperintensity (WMH) remains the top imaging biomarker for neurodegenerative diseases. Robust and accurate segmentation of WMH holds paramount significance for neuroimaging studies. The growing shift from 3T to 7T MRI necessitates robust tools for harmonized segmentation across field strengths and artifacts. Recent deep learning models exhibit promise in WMH segmentation but still face challenges, including diverse training data representation and limited analysis of MRI artifacts' impact. To address these, we introduce wmh_seg, a novel deep learning model leveraging a transformer-based encoder from SegFormer. wmh_seg is trained on an unmatched dataset, including 1.5T, 3T, and 7T FLAIR images from various sources, alongside with artificially added MR artifacts. Our approach bridges gaps in training diversity and artifact analysis. Our model demonstrated stable performance across magnetic field strengths, scanner manufacturers, and common MR imaging artifacts. Despite the unique inhomogeneity artifacts on ultra-high field MR images, our model still offers robust and stable segmentation on 7T FLAIR images. Our model, to date, is the first that offers quality white matter lesion segmentation on 7T FLAIR images.

eess.IV↗

arXiv2018

Incorporating Prior Information with Fused Sparse Group Lasso: Application to Prediction of Clinical Measures from Neuroimages

Predicting clinical variables from whole-brain neuroimages is a high dimensional problem that requires some type of feature selection or extraction. Penalized regression is a popular embedded feature selection method for high dimensional data. For neuroimaging applications, spatial regularization using the $\ell_1$ or $\ell_2$ norm of the image gradient has shown good performance, yielding smooth solutions in spatially contiguous brain regions. However, recently enormous resources have been devoted to establishing structural and functional brain connectivity networks that can be used to define spatially distributed yet related groups of voxels. We propose using the fused sparse group lasso penalty to encourage structured, sparse, interpretable solutions by incorporating prior information about spatial and group structure among voxels. We present optimization steps for fused sparse group lasso penalized regression using the alternating direction method of multipliers algorithm. With simulation studies and in application to real fMRI data from the Autism Brain Imaging Data Exchange, we demonstrate conditions under which fusion and group penalty terms together outperform either of them alone. Supplementary materials for this article are available online.

stat.ME↗