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Hua Xu

Publications and source records attributed to Hua Xu.

At least 55 records · Page 3Linked to original sources

Ellipsoid-Based Decision Boundaries for Open Intent Classification

Textual open intent classification is crucial for real-world dialogue systems, enabling robust detection of unknown user intents without prior knowledge and contributing to the robustness of the system. While adaptive decision boundary methods have shown great potential by eliminating manual threshold tuning, existing approaches assume isotropic distributions of known classes, restricting boundaries to balls and overlooking distributional variance along different directions. To address this limitation, we propose EliDecide, a novel method that learns ellipsoid decision boundaries with varying scales along different feature directions. First, we employ supervised contrastive learning to obtain a discriminative feature space for known samples. Second, we apply learnable matrices to parameterize ellipsoids as the boundaries of each known class, offering greater flexibility than spherical boundaries defined solely by centers and radii. Third, we optimize the boundaries via a novelly designed dual loss function that balances empirical and open-space risks: expanding boundaries to cover known samples while contracting them against synthesized pseudo-open samples. Our method achieves state-of-the-art performance on multiple text intent benchmarks and further on a question classification dataset. The flexibility of the ellipsoids demonstrates superior open intent detection capability and strong potential for generalization to more text classification tasks in diverse complex open-world scenarios.

cs.CL↗

Toward Automated Cognitive Assessment in Parkinson's Disease Using Pretrained Language Models

Understanding how individuals with Parkinson's disease (PD) describe cognitive experiences in their daily lives can offer valuable insights into disease-related cognitive and emotional changes. However, extracting such information from unstructured patient narratives is challenging due to the subtle, overlapping nature of cognitive constructs. This study developed and evaluated natural language processing (NLP) models to automatically identify categories that reflect various cognitive processes from de-identified first-person narratives. Three model families, a Bio_ClinicalBERT-based span categorization model for nested entity recognition, a fine-tuned Meta-Llama-3-8B-Instruct model using QLoRA for instruction following, and GPT-4o mini evaluated under zero- and few-shot settings, were compared on their performance on extracting seven categories. Our findings indicated that model performance varied substantially across categories and model families. The fine-tuned Meta-Llama-3-8B-Instruct achieved the highest overall F1-scores (0.74 micro-average and 0.59 macro-average), particularly excelling in context-dependent categories such as thought and social interaction. Bio_ClinicalBERT exhibited high precision but low recall and performed comparable to Llama for some category types such as location and time but failed on other categories such as thought, emotion and social interaction. Compared to conventional information extraction tasks, this task presents a greater challenge due to the abstract and overlapping nature of narrative accounts of complex cognitive processes. Nonetheless, with continued refinement, these NLP systems hold promise for enabling low-burden, longitudinal monitoring of cognitive function and serving as a valuable complement to formal neuropsychological assessments in PD.

cs.CL↗

Rethinking Retrieval-Augmented Generation for Medicine: A Large-Scale, Systematic Expert Evaluation and Practical Insights

Large language models (LLMs) are transforming the landscape of medicine, yet two fundamental challenges persist: keeping up with rapidly evolving medical knowledge and providing verifiable, evidence-grounded reasoning. Retrieval-augmented generation (RAG) has been widely adopted to address these limitations by supplementing model outputs with retrieved evidence. However, whether RAG reliably achieves these goals remains unclear. Here, we present the most comprehensive expert evaluation of RAG in medicine to date. Eighteen medical experts contributed a total of 80,502 annotations, assessing 800 model outputs generated by GPT-4o and Llama-3.1-8B across 200 real-world patient and USMLE-style queries. We systematically decomposed the RAG pipeline into three components: (i) evidence retrieval (relevance of retrieved passages), (ii) evidence selection (accuracy of evidence usage), and (iii) response generation (factuality and completeness of outputs). Contrary to expectation, standard RAG often degraded performance: only 22% of top-16 passages were relevant, evidence selection remained weak (precision 41-43%, recall 27-49%), and factuality and completeness dropped by up to 6% and 5%, respectively, compared with non-RAG variants. Retrieval and evidence selection remain key failure points for the model, contributing to the overall performance drop. We further show that simple yet effective strategies, including evidence filtering and query reformulation, substantially mitigate these issues, improving performance on MedMCQA and MedXpertQA by up to 12% and 8.2%, respectively. These findings call for re-examining RAG's role in medicine and highlight the importance of stage-aware evaluation and deliberate system design for reliable medical LLM applications.

cs.CL↗

LEME: Open Large Language Models for Ophthalmology with Advanced Reasoning and Clinical Validation

The rising prevalence of eye diseases poses a growing public health burden. Large language models (LLMs) offer a promising path to reduce documentation workload and support clinical decision-making. However, few have been tailored for ophthalmology, and most evaluations focus mainly on knowledge-based QA without clinically relevant benchmarks or real-world validation. Here, we present LEME, a suite of open-weight LLMs developed through a two-stage process: (1) instruction tuning on 200,000 samples from clinical guidelines, textbooks, and case reports to enhance reasoning and task-following, and (2) reinforcement learning with ~30,000 preference labels to enhance accuracy and informativeness. LEME was evaluated on five curated zero-shot benchmarks spanning tasks such as patient QA, consultation, and treatment planning. It outperformed all seven baselines (all p < 0.004), exceeding GPT-4o by 3.32% (absolute ROUGE-L gain). It was further evaluated on three downstream tasks using deidentified patient data, reviewed by clinicians. In patient QA, LEME received the highest ratings from attending clinicians in 3 out of 4 criteria, with scores of 4.67 for factuality, 4.77 for specificity, 4.79 for completeness, and 4.88 for safety (1-5 scale). Its completeness score surpassed that of expert-written answers (4.79 vs. 4.56; p = 0.015). In visual acuity extraction, LEME achieved the highest F1, outperforming LLaMA-3 by 14.1% and Eye-LLaMA by 59.0%. In a pilot evaluation on assessment and treatment planning for diabetic retinopathy, AMD, and glaucoma, LEME received scores of 4.36 for factuality, 4.55 for specificity, 4.42 for completeness, and 4.36 for safety, approaching attending-level performance. All models, data, and code will be released to support further development and clinical translation, laying the groundwork for improved efficiency and patient care

cs.CL↗

Discriminating Between Models of the Nanohertz Gravitational-Wave Background with Pulsar Timing Arrays

Recent pulsar timing array results, including the NANOGrav 15-year data set, show evidence for a stochastic gravitational-wave background (GWB) in the nanohertz band. We present a Bayesian framework to compare three possible origins: (i) a background from supermassive black hole binary mergers, (ii) a first-order phase transition in the early Universe, and (iii) a network of cosmic strings. We derive the PTA likelihood with the Hellings-Downs angular correlation and model intrinsic pulsar red noise and dispersion-measure variations. Using Bayesian model selection, we infer posteriors for the GWB amplitude and spectral slope and compute marginal likelihoods for each scenario. We confirm a common-spectrum process with Hellings-Downs spatial correlations and recover a characteristic strain amplitude at f_yr = 1/year of A_GWB approx 2.4e-15, with a slope consistent with gamma approx 13/3 as expected for supermassive black hole binaries. While fully consistent with an astrophysical origin, cosmological sources are not excluded: cosmic strings with Gmu ~ 1e-11 to 1e-10 and phase transitions peaking near 1e-8 to 1e-7 Hz can reproduce the observed amplitude within allowed parameter ranges. Current Bayes factors do not show a decisive preference among these scenarios. We discuss noise-mitigation implications and prospects for discrimination with future PTA observations.

astro-ph.CO↗

HyP-ASO: A Hybrid Policy-based Adaptive Search Optimization Framework for Large-Scale Integer Linear Programs

Directly solving large-scale Integer Linear Programs (ILPs) using traditional solvers is slow due to their NP-hard nature. While recent frameworks based on Large Neighborhood Search (LNS) can accelerate the solving process, their performance is often constrained by the difficulty in generating sufficiently effective neighborhoods. To address this challenge, we propose HyP-ASO, a hybrid policy-based adaptive search optimization framework that combines a customized formula with deep Reinforcement Learning (RL). The formula leverages feasible solutions to calculate the selection probabilities for each variable in the neighborhood generation process, and the RL policy network predicts the neighborhood size. Extensive experiments demonstrate that HyP-ASO significantly outperforms existing LNS-based approaches for large-scale ILPs. Additional experiments show it is lightweight and highly scalable, making it well-suited for solving large-scale ILPs.

cs.LG↗

Empowering Clinical Trial Design through AI: A Randomized Evaluation of PowerGPT

Sample size calculations for power analysis are critical for clinical research and trial design, yet their complexity and reliance on statistical expertise create barriers for many researchers. We introduce PowerGPT, an AI-powered system integrating large language models (LLMs) with statistical engines to automate test selection and sample size estimation in trial design. In a randomized trial to evaluate its effectiveness, PowerGPT significantly improved task completion rates (99.3% vs. 88.9% for test selection, 99.3% vs. 77.8% for sample size calculation) and accuracy (94.1% vs. 55.4% in sample size estimation, p < 0.001), while reducing average completion time (4.0 vs. 9.3 minutes, p < 0.001). These gains were consistent across various statistical tests and benefited both statisticians and non-statisticians as well as bridging expertise gaps. Already under deployment across multiple institutions, PowerGPT represents a scalable AI-driven approach that enhances accessibility, efficiency, and accuracy in statistical power analysis for clinical research.

cs.AI↗

FlashRecovery: Fast and Low-Cost Recovery from Failures for Large-Scale Training of LLMs

Large language models (LLMs) have made a profound impact across various fields due to their advanced capabilities. However, training these models at unprecedented scales requires extensive AI accelerator clusters and sophisticated parallelism strategies, which pose significant challenges in maintaining system reliability over prolonged training periods. A major concern is the substantial loss of training time caused by inevitable hardware and software failures. To address these challenges, we present FlashRecovery, a fast and low-cost failure recovery system comprising three core modules: (1) Active and real-time failure detection. This module performs continuous training state monitoring, enabling immediate identification of hardware and software failures within seconds, thus ensuring rapid incident response; (2) Scale-independent task restart. By employing different recovery strategies for normal and faulty nodes, combined with an optimized communication group reconstruction protocol, our approach ensures that the recovery time remains nearly constant, regardless of cluster scale; (3) Checkpoint-free recovery within one step. Our novel recovery mechanism enables single-step restoration, completely eliminating dependence on traditional checkpointing methods and their associated overhead. Collectively, these innovations enable FlashRecovery to achieve optimal Recovery Time Objective (RTO) and Recovery Point Objective (RPO), substantially improving the reliability and efficiency of long-duration LLM training. Experimental results demonstrate that FlashRecovery system can achieve training restoration on training cluster with 4, 800 devices in 150 seconds. We also verify that the time required for failure recovery is nearly consistent for different scales of training tasks.

cs.DC↗

LLM-Guided Semantic Relational Reasoning for Multimodal Intent Recognition

Understanding human intents from multimodal signals is critical for analyzing human behaviors and enhancing human-machine interactions in real-world scenarios. However, existing methods exhibit limitations in their modality-level reliance, constraining relational reasoning over fine-grained semantics for complex intent understanding. This paper proposes a novel LLM-Guided Semantic Relational Reasoning (LGSRR) method, which harnesses the expansive knowledge of large language models (LLMs) to establish semantic foundations that boost smaller models' relational reasoning performance. Specifically, an LLM-based strategy is proposed to extract fine-grained semantics as guidance for subsequent reasoning, driven by a shallow-to-deep Chain-of-Thought (CoT) that autonomously uncovers, describes, and ranks semantic cues by their importance without relying on manually defined priors. Besides, we formally model three fundamental types of semantic relations grounded in logical principles and analyze their nuanced interplay to enable more effective relational reasoning. Extensive experiments on multimodal intent and dialogue act recognition tasks demonstrate LGSRR's superiority over state-of-the-art methods, with consistent performance gains across diverse semantic understanding scenarios. The complete data and code are available at https://github.com/thuiar/LGSRR.

cs.MM↗

Multi-Label Classification with Generative AI Models in Healthcare: A Case Study of Suicidality and Risk Factors

Suicide remains a pressing global health crisis, with over 720,000 deaths annually and millions more affected by suicide ideation (SI) and suicide attempts (SA). Early identification of suicidality-related factors (SrFs), including SI, SA, exposure to suicide (ES), and non-suicidal self-injury (NSSI), is critical for timely intervention. While prior studies have applied AI to detect SrFs in clinical notes, most treat suicidality as a binary classification task, overlooking the complexity of cooccurring risk factors. This study explores the use of generative large language models (LLMs), specifically GPT-3.5 and GPT-4.5, for multi-label classification (MLC) of SrFs from psychiatric electronic health records (EHRs). We present a novel end to end generative MLC pipeline and introduce advanced evaluation methods, including label set level metrics and a multilabel confusion matrix for error analysis. Finetuned GPT-3.5 achieved top performance with 0.94 partial match accuracy and 0.91 F1 score, while GPT-4.5 with guided prompting showed superior performance across label sets, including rare or minority label sets, indicating a more balanced and robust performance. Our findings reveal systematic error patterns, such as the conflation of SI and SA, and highlight the models tendency toward cautious over labeling. This work not only demonstrates the feasibility of using generative AI for complex clinical classification tasks but also provides a blueprint for structuring unstructured EHR data to support large scale clinical research and evidence based medicine.

cs.CL↗

Quantum Long Short-Term Memory for Drug Discovery

Quantum computing combined with machine learning (ML) is a highly promising research area, with numerous studies demonstrating that quantum machine learning (QML) is expected to solve scientific problems more effectively than classical ML. In this work, we present Quantum Long Short-Term Memory (QLSTM), a QML architecture, and demonstrate its effectiveness in drug discovery. We evaluate QLSTM on five benchmark datasets (BBBP, BACE, SIDER, BCAP37, T-47D), and observe consistent performance gains over classical LSTM, with ROC-AUC improvements ranging from 3% to over 6%. Furthermore, QLSTM exhibits improved predictive accuracy as the number of qubits increases, and faster convergence than classical LSTM under the same training conditions. Notably, QLSTM maintains strong robustness against quantum computer noise, outperforming noise-free classical LSTM in certain settings. These findings highlight the potential of QLSTM as a scalable and noise-resilient model for scientific applications, particularly as quantum hardware continues to advance in qubit capacity and fidelity.

quant-ph↗

ELEVATE-GenAI: Reporting Guidelines for the Use of Large Language Models in Health Economics and Outcomes Research: an ISPOR Working Group on Generative AI Report

Introduction: Generative artificial intelligence (AI), particularly large language models (LLMs), holds significant promise for Health Economics and Outcomes Research (HEOR). However, standardized reporting guidance for LLM-assisted research is lacking. This article introduces the ELEVATE GenAI framework and checklist - reporting guidelines specifically designed for HEOR studies involving LLMs. Methods: The framework was developed through a targeted literature review of existing reporting guidelines, AI evaluation frameworks, and expert input from the ISPOR Working Group on Generative AI. It comprises ten domains, including model characteristics, accuracy, reproducibility, and fairness and bias. The accompanying checklist translates the framework into actionable reporting items. To illustrate its use, the framework was applied to two published HEOR studies: one focused on systematic literature review tasks and the other on economic modeling. Results: The ELEVATE GenAI framework offers a comprehensive structure for reporting LLM-assisted HEOR research, while the checklist facilitates practical implementation. Its application to the two case studies demonstrates its relevance and usability across different HEOR contexts. Limitations: Although the framework provides robust reporting guidance, further empirical testing is needed to assess its validity, completeness, usability, as well as its generalizability across diverse HEOR use cases. Conclusion: The ELEVATE GenAI framework and checklist address a critical gap by offering structured guidance for transparent, accurate, and reproducible reporting of LLM-assisted HEOR research. Future work will focus on extensive testing and validation to support broader adoption and refinement.

cs.CY↗

IMTS is Worth Time $\times$ Channel Patches: Visual Masked Autoencoders for Irregular Multivariate Time Series Prediction

Irregular Multivariate Time Series (IMTS) forecasting is challenging due to the unaligned nature of multi-channel signals and the prevalence of extensive missing data. Existing methods struggle to capture reliable temporal patterns from such data due to significant missing values. While pre-trained foundation models show potential for addressing these challenges, they are typically designed for Regularly Sampled Time Series (RTS). Motivated by the visual Mask AutoEncoder's (MAE) powerful capability for modeling sparse multi-channel information and its success in RTS forecasting, we propose VIMTS, a framework adapting Visual MAE for IMTS forecasting. To mitigate the effect of missing values, VIMTS first processes IMTS along the timeline into feature patches at equal intervals. These patches are then complemented using learned cross-channel dependencies. Then it leverages visual MAE's capability in handling sparse multichannel data for patch reconstruction, followed by a coarse-to-fine technique to generate precise predictions from focused contexts. In addition, we integrate self-supervised learning for improved IMTS modeling by adapting the visual MAE to IMTS data. Extensive experiments demonstrate VIMTS's superior performance and few-shot capability, advancing the application of visual foundation models in more general time series tasks. Our code is available at https://github.com/WHU-HZY/VIMTS.

cs.CV↗

Multimodal Classification and Out-of-distribution Detection for Multimodal Intent Understanding

Multimodal intent understanding is a significant research area that requires effective leveraging of multiple modalities to analyze human language. Existing methods face two main challenges in this domain. Firstly, they have limitations in capturing the nuanced and high-level semantics underlying complex in-distribution (ID) multimodal intents. Secondly, they exhibit poor generalization when confronted with unseen out-of-distribution (OOD) data in real-world scenarios. To address these issues, we propose a novel method for both ID classification and OOD detection (MIntOOD). We first introduce a weighted feature fusion network that models multimodal representations. This network dynamically learns the importance of each modality, adapting to multimodal contexts. To develop discriminative representations for both tasks, we synthesize pseudo-OOD data from convex combinations of ID data and engage in multimodal representation learning from both coarse-grained and fine-grained perspectives. The coarse-grained perspective focuses on distinguishing between ID and OOD binary classes, while the fine-grained perspective not only enhances the discrimination between different ID classes but also captures instance-level interactions between ID and OOD samples, promoting proximity among similar instances and separation from dissimilar ones. We establish baselines for three multimodal intent datasets and build an OOD benchmark. Extensive experiments on these datasets demonstrate that our method significantly improves OOD detection performance with a 3~10% increase in AUROC scores while achieving new state-of-the-art results in ID classification. Data and codes are available at https://github.com/thuiar/MIntOOD.

cs.MM↗

MapExplorer: New Content Generation from Low-Dimensional Visualizations

Low-dimensional visualizations, or "projection maps," are widely used in scientific and creative domains to interpret large-scale and complex datasets. These visualizations not only aid in understanding existing knowledge spaces but also implicitly guide exploration into unknown areas. Although techniques such as t-SNE and UMAP can generate these maps, there exists no systematic method for leveraging them to generate new content. To address this, we introduce MapExplorer, a novel knowledge discovery task that translates coordinates within any projection map into coherent, contextually aligned textual content. This allows users to interactively explore and uncover insights embedded in the maps. To evaluate the performance of MapExplorer methods, we propose Atometric, a fine-grained metric inspired by ROUGE that quantifies logical coherence and alignment between generated and reference text. Experiments on diverse datasets demonstrate the versatility of MapExplorer in generating scientific hypotheses, crafting synthetic personas, and devising strategies for attacking large language models-even with simple baseline methods. By bridging visualization and generation, our work highlights the potential of MapExplorer to enable intuitive human-AI collaboration in large-scale data exploration.

cs.AI↗

Code Retrieval for MILP Instance Generation

Mixed-Integer Linear Programming (MILP) is widely used in fields such as scheduling, logistics, and planning. Enhancing the performance of MILP solvers, particularly learning-based solvers, requires substantial amounts of high-quality data. However, existing methods for MILP instance generation typically necessitate training a separate model for each problem class and are computationally intensive when generating new instances. To address these limitations, we reformulate the MILP Instance Generation task as MILP Code Generation task, enabling efficient, flexible, and interpretable instance generation through code. Since MILP instances generated from code can vary significantly in scale, we introduce MILP-EmbedSim, a new similarity metric that accurately measures the similarity between instances of varying sizes within the same problem class. Leveraging this metric, we propose MILP-Retrieval, a pipeline that retrieves generation code from library to produce MILP instances highly similar to target instance. MILP-Retrieval outperforms baselines in both MILP Code Generation and Instance Generation tasks, provides a novel perspective on MILP instance generation and opens new possibilities for learning-based solvers.

math.OC↗

Benchmarking large language models for biomedical natural language processing applications and recommendations

The rapid growth of biomedical literature poses challenges for manual knowledge curation and synthesis. Biomedical Natural Language Processing (BioNLP) automates the process. While Large Language Models (LLMs) have shown promise in general domains, their effectiveness in BioNLP tasks remains unclear due to limited benchmarks and practical guidelines. We perform a systematic evaluation of four LLMs, GPT and LLaMA representatives on 12 BioNLP benchmarks across six applications. We compare their zero-shot, few-shot, and fine-tuning performance with traditional fine-tuning of BERT or BART models. We examine inconsistencies, missing information, hallucinations, and perform cost analysis. Here we show that traditional fine-tuning outperforms zero or few shot LLMs in most tasks. However, closed-source LLMs like GPT-4 excel in reasoning-related tasks such as medical question answering. Open source LLMs still require fine-tuning to close performance gaps. We find issues like missing information and hallucinations in LLM outputs. These results offer practical insights for applying LLMs in BioNLP.

cs.CL↗

Can Large Language Models Help Multimodal Language Analysis? MMLA: A Comprehensive Benchmark

Multimodal language analysis is a rapidly evolving field that leverages multiple modalities to enhance the understanding of high-level semantics underlying human conversational utterances. Despite its significance, little research has investigated the capability of multimodal large language models (MLLMs) to comprehend cognitive-level semantics. In this paper, we introduce MMLA, a comprehensive benchmark specifically designed to address this gap. MMLA comprises over 61K multimodal utterances drawn from both staged and real-world scenarios, covering six core dimensions of multimodal semantics: intent, emotion, dialogue act, sentiment, speaking style, and communication behavior. We evaluate eight mainstream branches of LLMs and MLLMs using three methods: zero-shot inference, supervised fine-tuning, and instruction tuning. Extensive experiments reveal that even fine-tuned models achieve only about 60%~70% accuracy, underscoring the limitations of current MLLMs in understanding complex human language. We believe that MMLA will serve as a solid foundation for exploring the potential of large language models in multimodal language analysis and provide valuable resources to advance this field. The datasets and code are open-sourced at https://github.com/thuiar/MMLA.

cs.CL↗