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Huafeng Liu

Publications and source records attributed to Huafeng Liu.

At least 19 recordsLinked to original sources

Manifold-Constrained PET Reconstruction with Learned Flow-Matching Priors

Image reconstruction for positron emission tomography (PET) is an ill-posed Poisson inverse problem that often suffers from severe noise amplification and artifacts. In this work, we introduce an unsupervised, optimization-based reconstruction framework that employs a flow-matching generative model as a learned manifold prior. We train the flow-matching model on high-quality PET images to learn a deterministic ordinary differential equation transport from a Gaussian latent distribution to the empirical PET image distribution, yielding a differentiable generator of anatomically plausible images. We incorporate this generator as an explicit manifold constraint into a regularized Poisson likelihood formulation. We solve the resulting optimization problem using an alternating direction method of multipliers algorithm, in which an expectation-maximization-type surrogate update enforces data consistency and a gradient-based latent-space projection enforces manifold proximity. We evaluate the proposed method on both simulated and real PET datasets, assessing dose-level robustness, lesion-insertion generalization, and cross-scanner transfer. Compared with conventional reconstruction methods and state-of-the-art deep learning baselines, the proposed method provides superior noise suppression, structural preservation, and quantitative accuracy, while maintaining high computational efficiency.

eess.IV

MWF-MIMOSA for efficient simultaneous relaxometry and myelin water fraction mapping

Quantitative magnetic resonance imaging (qMRI) provides improved sensitivity and specificity to tissue composition and pathological alterations compared with conventional contrast-weighted imaging. Among various qMRI biomarkers, myelin water imaging is of particular interest because myelin plays a central role in brain function and its alteration is closely associated with many neurological diseases. However, conventional myelin water fraction (MWF) mapping techniques are often limited by long scan times, low spatial resolution, reduced signal-to-noise ratio (SNR), and high specific absorption rate (SAR). Here, we propose MWF-MIMOSA for efficient simultaneous T1, T2, T2* mapping, magnetic susceptibility source separation, and MWF estimation. To achieve this, multi-contrast and multi-slice zero-shot self-supervised learning (MZS-SSL) was used to jointly reconstruct whole-brain complex-valued images. To improve computational efficiency of the parameter estimation step, a multilayer perceptron (MLP) was trained within the GACELLE GPU-accelerated parameter estimation framework to circumvent the computationally intensive Bloch simulation process, resulting in a >100-fold computational speed-up in MWF estimation. Numerical simulations were performed to evaluate the accuracy and precision of MWF-MIMOSA, and in-vivo results further demonstrated its robustness. Comparison with existing myelin water imaging methods showed that MWF-MIMOSA is highly correlated with established approaches, while providing complementary quantitative parameter maps at higher spatial resolution and with shorter scan times. Notably, simultaneous multi-parametric mapping was achieved in 5 min at 1 mm isotropic resolution, and in 10 min at 0.7 mm isotropic resolution. These results demonstrate the potential of MWF-MIMOSA for fast, high-resolution simultaneous relaxometry and myelin water imaging.

physics.med-ph

Cassie-Wenzel transition induced by localized freezing after droplet impact on supercooled micro-patterned surfaces

Micro-patterned surfaces have attracted significant attention in numerous applications owing to their potential to enhance hydrophobic and icephobic properties. A Cassie state of final wetting of a droplet upon impact on a micro-patterned surface, which is highly favorable for anti-icing applications, is achieved in this study through rapid localized freezing in the droplet-surface contact region via tuning the coupled interplay among droplet spreading kinetics, interfacial heat transfer, and solidification dynamics. Synchronized high-speed imaging and infrared thermography are employed to probe droplet impact and freezing dynamics, with particular emphasis on the transition of wetting state and its effect on the resulting freezing morphology. Experimental results reveal that variations in impact velocity and wall temperature lead to a final frozen wetting-state transition of the droplet from the Wenzel to the Cassie regime, accompanied by pronounced changes in freezing time, final spreading diameter, and frozen height. The transition of wetting states is attributed to rapid localized freezing at the droplet bottom, which suppresses liquid penetration into the micro-pattern. At lower impact velocities and surface temperatures, droplets tend to maintain the Cassie state with extended freezing durations, whereas higher velocities or higher temperatures promote rapid penetration and accelerated freezing. This study elucidates the coupled penetrating-freezing mechanism governed by micro-pattern design and provides fundamental insights into the rational design of anti-icing and icephobic surfaces.

physics.flu-dyn

MAPLE: Elevating Medical Reasoning from Statistical Consensus to Process-Led Alignment

Recent advances in medical large language models have explored Test-Time Reinforcement Learning (TTRL) to enhance reasoning. However, standard TTRL often relies on majority voting (MV) as a heuristic supervision signal, which can be unreliable in complex medical scenarios where the most frequent reasoning path is not necessarily the clinically correct one. In this work, we propose a novel and unified training paradigm that integrates medical process reward models with TTRL to bridge the gap between test-time scaling (TTS) and parametric model optimization. Specifically, we advance the TTRL framework by replacing the conventional MV with a fine-grained, expert-aligned supervision paradigm using Med-RPM. This integration ensures that reinforcement learning is guided by medical correctness rather than mere consensus, effectively distilling search-based intelligence into the model's parametric memory. Extensive evaluations on four different benchmarks have demonstrated that our developed method consistently and significantly outperforms current TTRL and standalone PRM selection. Our findings establish that transitioning from stochastic heuristics to structured, step-wise rewards is essential for developing reliable and scalable medical AI systems

cs.LG

Learning Neural Operators from Partial Observations via Latent Autoregressive Modeling

Real-world scientific applications frequently encounter incomplete observational data due to sensor limitations, geographic constraints, or measurement costs. Although neural operators significantly advanced PDE solving in terms of computational efficiency and accuracy, their underlying assumption of fully-observed spatial inputs severely restricts applicability in real-world applications. We introduce the first systematic framework for learning neural operators from partial observation. We identify and formalize two fundamental obstacles: (i) the supervision gap in unobserved regions that prevents effective learning of physical correlations, and (ii) the dynamic spatial mismatch between incomplete inputs and complete solution fields. Specifically, our proposed Latent Autoregressive Neural Operator(LANO) introduces two novel components designed explicitly to address the core difficulties of partial observations: (i) a mask-to-predict training strategy that creates artificial supervision by strategically masking observed regions, and (ii) a Physics-Aware Latent Propagator that reconstructs solutions through boundary-first autoregressive generation in latent space. Additionally, we develop POBench-PDE, a dedicated and comprehensive benchmark designed specifically for evaluating neural operators under partial observation conditions across three PDE-governed tasks. LANO achieves state-of-the-art performance with 18--69$\%$ relative L2 error reduction across all benchmarks under patch-wise missingness with less than 50$\%$ missing rate, including real-world climate prediction. Our approach effectively addresses practical scenarios involving up to 75$\%$ missing rate, to some extent bridging the existing gap between idealized research settings and the complexities of real-world scientific computing.

cs.LG

Omni-QALAS: Optimized Multiparametric Imaging for Simultaneous T1, T2 and Myelin Water Mapping

Purpose: To improve the accuracy of multiparametric estimation, including myelin water fraction (MWF) quantification, and reduce scan time in 3D-QALAS by optimizing sequence parameters, using a self-supervised multilayer perceptron network. Methods: We jointly optimize flip angles, T2 preparation durations, and sequence gaps for T1 recovery using a self-supervised MLP trained to minimize a Cramer-Rao bound-based loss function, with explicit constraints on total scan time. The optimization targets white matter, gray matter, and myelin water tissues, and its performance was validated through simulation, phantom, and in vivo experiments. Results: Building on our previously proposed MWF-QALAS method for simultaneous MWF, T1, and T2 mapping, the optimized sequence reduces the number of readouts from six to five and achieves a scan time nearly one minute shorter, while also yielding higher T1 and T2 accuracy and improved MWF maps. This sequence enables simultaneous multiparametric quantification, including MWF, at 1 mm isotropic resolution within 3 minutes and 30 seconds. Conclusion: This study demonstrated that optimizing sequence parameters using a self-supervised MLP network improved T1, T2 and MWF estimation accuracy, while reducing scan time.

q-bio.QM

ALL-PET: A Low-resource and Low-shot PET Foundation Model in Projection Domain

Building large-scale foundation model for PET imaging is hindered by limited access to labeled data and insufficient computational resources. To overcome data scarcity and efficiency limitations, we propose ALL-PET, a low-resource, low-shot PET foundation model operating directly in projection domain. ALL-PET leverages a latent diffusion model (LDM) with three key innovations. First, we design a Radon mask augmentation strategy (RMAS) that generates over 200,000 structurally diverse training samples by projecting randomized image-domain masks into sinogram space, significantly improving generalization with minimal data. This is extended by a dynamic multi-mask (DMM) mechanism that varies mask quantity and distribution, enhancing data diversity without added model complexity. Second, we implement positive/negative mask constraints to embed strict geometric consistency, reducing parameter burden while preserving generation quality. Third, we introduce transparent medical attention (TMA), a parameter-free, geometry-driven mechanism that enhances lesion-related regions in raw projection data. Lesion-focused attention maps are derived from coarse segmentation, covering both hypermetabolic and hypometabolic areas, and projected into sinogram space for physically consistent guidance. The system supports clinician-defined ROI adjustments, ensuring flexible, interpretable, and task-adaptive emphasis aligned with PET acquisition physics. Experimental results show that ALL-PET achieves high-quality sinogram generation using only 500 samples, with performance comparable to models trained on larger datasets. ALL-PET generalizes across tasks including low-dose reconstruction, attenuation correction, delayed-frame prediction, and tracer separation, operating efficiently with memory use under 24GB.

cs.CV

Exploring Efficiency Frontiers of Thinking Budget in Medical Reasoning: Scaling Laws between Computational Resources and Reasoning Quality

This study presents the first comprehensive evaluation of thinking budget mechanisms in medical reasoning tasks, revealing fundamental scaling laws between computational resources and reasoning quality. We systematically evaluated two major model families, Qwen3 (1.7B to 235B parameters) and DeepSeek-R1 (1.5B to 70B parameters), across 15 medical datasets spanning diverse specialties and difficulty levels. Through controlled experiments with thinking budgets ranging from zero to unlimited tokens, we establish logarithmic scaling relationships where accuracy improvements follow a predictable pattern with both thinking budget and model size. Our findings identify three distinct efficiency regimes: high-efficiency (0 to 256 tokens) suitable for real-time applications, balanced (256 to 512 tokens) offering optimal cost-performance tradeoffs for routine clinical support, and high-accuracy (above 512 tokens) justified only for critical diagnostic tasks. Notably, smaller models demonstrate disproportionately larger benefits from extended thinking, with 15 to 20% improvements compared to 5 to 10% for larger models, suggesting a complementary relationship where thinking budget provides greater relative benefits for capacity-constrained models. Domain-specific patterns emerge clearly, with neurology and gastroenterology requiring significantly deeper reasoning processes than cardiovascular or respiratory medicine. The consistency between Qwen3 native thinking budget API and our proposed truncation method for DeepSeek-R1 validates the generalizability of thinking budget concepts across architectures. These results establish thinking budget control as a critical mechanism for optimizing medical AI systems, enabling dynamic resource allocation aligned with clinical needs while maintaining the transparency essential for healthcare deployment.

cs.CL

MIMOSA: Multi-parametric Imaging using Multiple-echoes with Optimized Simultaneous Acquisition for highly-efficient quantitative MRI

Purpose: To develop a new sequence, MIMOSA, for highly-efficient T1, T2, T2*, proton density (PD), and source separation quantitative susceptibility mapping (QSM). Methods: MIMOSA was developed based on 3D-quantification using an interleaved Look-Locker acquisition sequence with T2 preparation pulse (3D-QALAS) by combining 3D turbo Fast Low Angle Shot (FLASH) and multi-echo gradient echo acquisition modules with a spiral-like Cartesian trajectory to facilitate highly-efficient acquisition. Simulations were performed to optimize the sequence. Multi-contrast/-slice zero-shot self-supervised learning algorithm was employed for reconstruction. The accuracy of quantitative mapping was assessed by comparing MIMOSA with 3D-QALAS and reference techniques in both ISMRM/NIST phantom and in-vivo experiments. MIMOSA's acceleration capability was assessed at R = 3.3, 6.5, and 11.8 in in-vivo experiments, with repeatability assessed through scan-rescan studies. Beyond the 3T experiments, mesoscale quantitative mapping was performed at 750 um isotropic resolution at 7T. Results: Simulations demonstrated that MIMOSA achieved improved parameter estimation accuracy compared to 3D-QALAS. Phantom experiments indicated that MIMOSA exhibited better agreement with the reference techniques than 3D-QALAS. In-vivo experiments demonstrated that an acceleration factor of up to R = 11.8-fold can be achieved while preserving parameter estimation accuracy, with intra-class correlation coefficients of 0.998 (T1), 0.973 (T2), 0.947 (T2*), 0.992 (QSM), 0.987 (paramagnetic susceptibility), and 0.977 (diamagnetic susceptibility) in scan-rescan studies. Whole-brain T1, T2, T2*, PD, source separation QSM were obtained with 1 mm isotropic resolution in 3 min at 3T and 750 um isotropic resolution in 13 min at 7T. Conclusion: MIMOSA demonstrated potential for highly-efficient multi-parametric mapping.

physics.med-ph

Predicting ICU In-Hospital Mortality Using Adaptive Transformer Layer Fusion

Early identification of high-risk ICU patients is crucial for directing limited medical resources. We introduce ALFIA (Adaptive Layer Fusion with Intelligent Attention), a modular, attention-based architecture that jointly trains LoRA (Low-Rank Adaptation) adapters and an adaptive layer-weighting mechanism to fuse multi-layer semantic features from a BERT backbone. Trained on our rigorous cw-24 (CriticalWindow-24) benchmark, ALFIA surpasses state-of-the-art tabular classifiers in AUPRC while preserving a balanced precision-recall profile. The embeddings produced by ALFIA's fusion module, capturing both fine-grained clinical cues and high-level concepts, enable seamless pairing with GBDTs (CatBoost/LightGBM) as ALFIA-boost, and deep neuro networks as ALFIA-nn, yielding additional performance gains. Our experiments confirm ALFIA's superior early-warning performance, by operating directly on routine clinical text, it furnishes clinicians with a convenient yet robust tool for risk stratification and timely intervention in critical-care settings.

cs.LG

Dynamic PET Image Prediction Using a Network Combining Reversible and Irreversible Modules

Dynamic positron emission tomography (PET) images can reveal the distribution of tracers in the organism and the dynamic processes involved in biochemical reactions, and it is widely used in clinical practice. Despite the high effectiveness of dynamic PET imaging in studying the kinetics and metabolic processes of radiotracers. Pro-longed scan times can cause discomfort for both patients and medical personnel. This study proposes a dynamic frame prediction method for dynamic PET imaging, reduc-ing dynamic PET scanning time by applying a multi-module deep learning framework composed of reversible and irreversible modules. The network can predict kinetic parameter images based on the early frames of dynamic PET images, and then generate complete dynamic PET images. In validation experiments with simulated data, our network demonstrated good predictive performance for kinetic parameters and was able to reconstruct high-quality dynamic PET images. Additionally, in clinical data experiments, the network exhibited good generalization performance and attached that the proposed method has promising clinical application prospects.

eess.IV

FashionR2R: Texture-preserving Rendered-to-Real Image Translation with Diffusion Models

Modeling and producing lifelike clothed human images has attracted researchers' attention from different areas for decades, with the complexity from highly articulated and structured content. Rendering algorithms decompose and simulate the imaging process of a camera, while are limited by the accuracy of modeled variables and the efficiency of computation. Generative models can produce impressively vivid human images, however still lacking in controllability and editability. This paper studies photorealism enhancement of rendered images, leveraging generative power from diffusion models on the controlled basis of rendering. We introduce a novel framework to translate rendered images into their realistic counterparts, which consists of two stages: Domain Knowledge Injection (DKI) and Realistic Image Generation (RIG). In DKI, we adopt positive (real) domain finetuning and negative (rendered) domain embedding to inject knowledge into a pretrained Text-to-image (T2I) diffusion model. In RIG, we generate the realistic image corresponding to the input rendered image, with a Texture-preserving Attention Control (TAC) to preserve fine-grained clothing textures, exploiting the decoupled features encoded in the UNet structure. Additionally, we introduce SynFashion dataset, featuring high-quality digital clothing images with diverse textures. Extensive experimental results demonstrate the superiority and effectiveness of our method in rendered-to-real image translation.

cs.CV

Deep unrolled primal dual network for TOF-PET list-mode image reconstruction

Time-of-flight (TOF) information provides more accurate location data for annihilation photons, thereby enhancing the quality of PET reconstruction images and reducing noise. List-mode reconstruction has a significant advantage in handling TOF information. However, current advanced TOF PET list-mode reconstruction algorithms still require improvements when dealing with low-count data. Deep learning algorithms have shown promising results in PET image reconstruction. Nevertheless, the incorporation of TOF information poses significant challenges related to the storage space required by deep learning methods, particularly for the advanced deep unrolled methods. In this study, we propose a deep unrolled primal dual network for TOF-PET list-mode reconstruction. The network is unrolled into multiple phases, with each phase comprising a dual network for list-mode domain updates and a primal network for image domain updates. We utilize CUDA for parallel acceleration and computation of the system matrix for TOF list-mode data, and we adopt a dynamic access strategy to mitigate memory consumption. Reconstructed images of different TOF resolutions and different count levels show that the proposed method outperforms the LM-OSEM, LM-EMTV, LM-SPDHG,LM-SPDHG-TV and FastPET method in both visually and quantitative analysis. These results demonstrate the potential application of deep unrolled methods for TOF-PET list-mode data and show better performance than current mainstream TOF-PET list-mode reconstruction algorithms, providing new insights for the application of deep learning methods in TOF list-mode data. The codes for this work are available at https://github.com/RickHH/LMPDnet

eess.IV

Universal Organizer of SAM for Unsupervised Semantic Segmentation

Unsupervised semantic segmentation (USS) aims to achieve high-quality segmentation without manual pixel-level annotations. Existing USS models provide coarse category classification for regions, but the results often have blurry and imprecise edges. Recently, a robust framework called the segment anything model (SAM) has been proven to deliver precise boundary object masks. Therefore, this paper proposes a universal organizer based on SAM, termed as UO-SAM, to enhance the mask quality of USS models. Specifically, using only the original image and the masks generated by the USS model, we extract visual features to obtain positional prompts for target objects. Then, we activate a local region optimizer that performs segmentation using SAM on a per-object basis. Finally, we employ a global region optimizer to incorporate global image information and refine the masks to obtain the final fine-grained masks. Compared to existing methods, our UO-SAM achieves state-of-the-art performance.

cs.MM

Unsupervised Learning of Hybrid Latent Dynamics: A Learn-to-Identify Framework

Modern applications increasingly require unsupervised learning of latent dynamics from high-dimensional time-series. This presents a significant challenge of identifiability: many abstract latent representations may reconstruct observations, yet do they guarantee an adequate identification of the governing dynamics? This paper investigates this challenge from two angles: the use of physics inductive bias specific to the data being modeled, and a learn-to-identify strategy that separates forecasting objectives from the data used for the identification. We combine these two strategies in a novel framework for unsupervised meta-learning of hybrid latent dynamics (Meta-HyLaD) with: 1) a latent dynamic function that hybridize known mathematical expressions of prior physics with neural functions describing its unknown errors, and 2) a meta-learning formulation to learn to separately identify both components of the hybrid dynamics. Through extensive experiments on five physics and one biomedical systems, we provide strong evidence for the benefits of Meta-HyLaD to integrate rich prior knowledge while identifying their gap to observed data.

cs.LG

Hybrid Kinetics Embedding Framework for Dynamic PET Reconstruction

In dynamic positron emission tomography (PET) reconstruction, the importance of leveraging the temporal dependence of the data has been well appreciated. Current deep-learning solutions can be categorized in two groups in the way the temporal dynamics is modeled: data-driven approaches use spatiotemporal neural networks to learn the temporal dynamics of tracer kinetics from data, which relies heavily on data supervision; physics-based approaches leverage \textit{a priori} tracer kinetic models to focus on inferring their parameters, which relies heavily on the accuracy of the prior kinetic model. In this paper, we marry the strengths of these two approaches in a hybrid kinetics embedding (HyKE-Net) framework for dynamic PET reconstruction. We first introduce a novel \textit{hybrid} model of tracer kinetics consisting of a physics-based function augmented by a neural component to account for its gap to data-generating tracer kinetics, both identifiable from data. We then embed this hybrid model at the latent space of an encoding-decoding framework to enable both supervised and unsupervised identification of the hybrid kinetics and thereby dynamic PET reconstruction. Through both phantom and real-data experiments, we demonstrate the benefits of HyKE-Net -- especially in unsupervised reconstructions -- over existing physics-based and data-driven baselines as well as its ablated formulations where the embedded tracer kinetics are purely physics-based, purely neural, or hybrid but with a non-adaptable neural component.

eess.IV

VideoMAC: Video Masked Autoencoders Meet ConvNets

Recently, the advancement of self-supervised learning techniques, like masked autoencoders (MAE), has greatly influenced visual representation learning for images and videos. Nevertheless, it is worth noting that the predominant approaches in existing masked image / video modeling rely excessively on resource-intensive vision transformers (ViTs) as the feature encoder. In this paper, we propose a new approach termed as \textbf{VideoMAC}, which combines video masked autoencoders with resource-friendly ConvNets. Specifically, VideoMAC employs symmetric masking on randomly sampled pairs of video frames. To prevent the issue of mask pattern dissipation, we utilize ConvNets which are implemented with sparse convolutional operators as encoders. Simultaneously, we present a simple yet effective masked video modeling (MVM) approach, a dual encoder architecture comprising an online encoder and an exponential moving average target encoder, aimed to facilitate inter-frame reconstruction consistency in videos. Additionally, we demonstrate that VideoMAC, empowering classical (ResNet) / modern (ConvNeXt) convolutional encoders to harness the benefits of MVM, outperforms ViT-based approaches on downstream tasks, including video object segmentation (+\textbf{5.2\%} / \textbf{6.4\%} $\mathcal{J}\&\mathcal{F}$), body part propagation (+\textbf{6.3\%} / \textbf{3.1\%} mIoU), and human pose tracking (+\textbf{10.2\%} / \textbf{11.1\%} PCK@0.1).

cs.CV

Learning with Imbalanced Noisy Data by Preventing Bias in Sample Selection

Learning with noisy labels has gained increasing attention because the inevitable imperfect labels in real-world scenarios can substantially hurt the deep model performance. Recent studies tend to regard low-loss samples as clean ones and discard high-loss ones to alleviate the negative impact of noisy labels. However, real-world datasets contain not only noisy labels but also class imbalance. The imbalance issue is prone to causing failure in the loss-based sample selection since the under-learning of tail classes also leans to produce high losses. To this end, we propose a simple yet effective method to address noisy labels in imbalanced datasets. Specifically, we propose Class-Balance-based sample Selection (CBS) to prevent the tail class samples from being neglected during training. We propose Confidence-based Sample Augmentation (CSA) for the chosen clean samples to enhance their reliability in the training process. To exploit selected noisy samples, we resort to prediction history to rectify labels of noisy samples. Moreover, we introduce the Average Confidence Margin (ACM) metric to measure the quality of corrected labels by leveraging the model's evolving training dynamics, thereby ensuring that low-quality corrected noisy samples are appropriately masked out. Lastly, consistency regularization is imposed on filtered label-corrected noisy samples to boost model performance. Comprehensive experimental results on synthetic and real-world datasets demonstrate the effectiveness and superiority of our proposed method, especially in imbalanced scenarios. Comprehensive experimental results on synthetic and real-world datasets demonstrate the effectiveness and superiority of our proposed method, especially in imbalanced scenarios.

cs.LG