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Huahua Lin

Publications and source records attributed to Huahua Lin.

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SEIS: Subspace-based Equivariance and Invariance Scores for Neural Representations

Understanding how neural representations respond to geometric transformations is essential for evaluating whether learned features preserve meaningful spatial structure. Existing approaches primarily assess robustness primarily by comparing model outputs under transformed inputs, offering limited insight into how geometric information is organized within internal representations and failing to distinguish between information loss and re-encoding. In this work, we introduce SEIS (Subspace-based Equivariance and Invariance Scores), a subspace metric for analyzing layer-wise feature representations under geometric transformations, disentangling equivariance from invariance without requiring labels or explicit knowledge of the transformation. Through controlled experiments across diverse architectures, we uncover several consistent patterns. First, convolutional encoders exhibit a depth-wise transition from strong equivariance to increasing invariance, with both properties stabilizing within the first few training epochs. In segmentation decoders, however, equivariance tends to recover in later layers. Second, this trade-off is not intrinsic but is shaped by training decisions: data augmentation actively strengthens both equivariance and invariance simultaneously, and multi-task learning induces synergistic gains in both properties beyond what either task achieves alone. Extending our analysis beyond convolutional networks, we find that transformer-based models exhibit distinct geometric behaviors, while MLP-Mixers display intermediate characteristics.

cs.LG

From Instance Segmentation to 3D Growth Trajectory Reconstruction in Planktonic Foraminifera

Planktonic foraminifera, marine protists characterized by their intricate chambered shells, serve as valuable indicators of past and present environmental conditions. Understanding their chamber growth trajectory provides crucial insights into organismal development and ecological adaptation under changing environments. However, automated tracing of chamber growth from imaging data remains largely unexplored, with existing approaches relying heavily on manual segmentation of each chamber, which is time-consuming and subjective. In this study, we propose an end-to-end pipeline that integrates instance segmentation, a computer vision technique not extensively explored in foraminifera, with a dedicated chamber ordering algorithm to automatically reconstruct three-dimensional growth trajectories from high-resolution computed tomography scans. We quantitatively and qualitatively evaluate multiple instance segmentation methods, each optimized for distinct spatial features of the chambers, and examine their downstream influence on growth-order reconstruction accuracy. Experimental results on expert-annotated datasets demonstrate that the proposed pipeline substantially reduces manual effort while maintaining biologically meaningful accuracy. Although segmentation models exhibit under-segmentation in smaller chambers due to reduced voxel fidelity and subtle inter-chamber connectivity, the chamber-ordering algorithm remains robust, achieving consistent reconstruction of developmental trajectories even under partial segmentation. This work provides the first fully automated and reproducible pipeline for digital foraminiferal growth analysis, establishing a foundation for large-scale, data-driven ecological studies.

cs.CV