arXiv subjects

Huaxiu Yao

Publications and source records attributed to Huaxiu Yao.

At least 73 records · Page 4Linked to original sources

arXiv2025

Mimicking the Physicist's Eye:A VLM-centric Approach for Physics Formula Discovery

Automated discovery of physical laws from observational data in the real world is a grand challenge in AI. Current methods, relying on symbolic regression or LLMs, are limited to uni-modal data and overlook the rich, visual phenomenological representations of motion that are indispensable to physicists. This "sensory deprivation" severely weakens their ability to interpret the inherent spatio-temporal patterns within dynamic phenomena. To address this gap, we propose VIPER-R1, a multimodal model that performs Visual Induction for Physics-based Equation Reasoning to discover fundamental symbolic formulas. It integrates visual perception, trajectory data, and symbolic reasoning to emulate the scientific discovery process. The model is trained via a curriculum of Motion Structure Induction (MSI), using supervised fine-tuning to interpret kinematic phase portraits and to construct hypotheses guided by a Causal Chain of Thought (C-CoT), followed by Reward-Guided Symbolic Calibration (RGSC) to refine the formula structure with reinforcement learning. During inference, the trained VIPER-R1 acts as an agent: it first posits a high-confidence symbolic ansatz, then proactively invokes an external symbolic regression tool to perform Symbolic Residual Realignment (SR^2). This final step, analogous to a physicist's perturbation analysis, reconciles the theoretical model with empirical data. To support this research, we introduce PhysSymbol, a new 5,000-instance multimodal corpus. Experiments show that VIPER-R1 consistently outperforms state-of-the-art VLM baselines in accuracy and interpretability, enabling more precise discovery of physical laws. Project page: https://jiaaqiliu.github.io/VIPER-R1/

cs.AI↗

arXiv2025

GLIMPSE: Do Large Vision-Language Models Truly Think With Videos or Just Glimpse at Them?

Existing video benchmarks often resemble image-based benchmarks, with question types like "What actions does the person perform throughout the video?" or "What color is the woman's dress in the video?" For these, models can often answer by scanning just a few key frames, without deep temporal reasoning. This limits our ability to assess whether large vision-language models (LVLMs) can truly think with videos rather than perform superficial frame-level analysis. To address this, we introduce GLIMPSE, a benchmark specifically designed to evaluate whether LVLMs can genuinely think with videos. Unlike prior benchmarks, GLIMPSE emphasizes comprehensive video understanding beyond static image cues. It consists of 3,269 videos and over 4,342 highly visual-centric questions across 11 categories, including Trajectory Analysis, Temporal Reasoning, and Forensics Detection. All questions are carefully crafted by human annotators and require watching the entire video and reasoning over full video context-this is what we mean by thinking with video. These questions cannot be answered by scanning selected frames or relying on text alone. In human evaluations, GLIMPSE achieves 94.82% accuracy, but current LVLMs face significant challenges. Even the best-performing model, GPT-o3, reaches only 66.43%, highlighting that LVLMs still struggle to move beyond surface-level reasoning to truly think with videos.

cs.CV↗

arXiv2025

AI for NONMEM Coding in Pharmacometrics Research and Education: Shortcut or Pitfall?

Artificial intelligence (AI) is increasingly being explored as a tool to support pharmacometric modeling, particularly in addressing the coding challenges associated with NONMEM. In this study, we evaluated the ability of seven AI agents to generate NONMEM codes across 13 pharmacometrics tasks, including a range of population pharmacokinetic (PK) and pharmacodynamic (PD) models. We further developed a standardized scoring rubric to assess code accuracy and created an optimized prompt to improve AI agent performance. Our results showed that the OpenAI o1 and gpt-4.1 models achieved the best performance, both generating codes with great accuracy for all tasks when using our optimized prompt. Overall, AI agents performed well in writing basic NONMEM model structures, providing a useful foundation for pharmacometrics model coding. However, user review and refinement remain essential, especially for complex models with special dataset alignment or advanced coding techniques. We also discussed the applications of AI in pharmacometrics education, particularly strategies to prevent over-reliance on AI for coding. This work provides a benchmark for current AI agents performance in NONMEM coding and introduces a practical prompt that can facilitate more accurate and efficient use of AI in pharmacometrics research and education.

q-bio.OT↗

arXiv2025

MEIT: Multimodal Electrocardiogram Instruction Tuning on Large Language Models for Report Generation

Electrocardiogram (ECG) is the primary non-invasive diagnostic tool for monitoring cardiac conditions and is crucial in assisting clinicians. Recent studies have concentrated on classifying cardiac conditions using ECG data but have overlooked ECG report generation, which is time-consuming and requires clinical expertise. To automate ECG report generation and ensure its versatility, we propose the Multimodal ECG Instruction Tuning (MEIT) framework, the first attempt to tackle ECG report generation with LLMs and multimodal instructions. To facilitate future research, we establish a benchmark to evaluate MEIT with various LLMs backbones across two large-scale ECG datasets. Our approach uniquely aligns the representations of the ECG signal and the report, and we conduct extensive experiments to benchmark MEIT with nine open-source LLMs using more than 800,000 ECG reports. MEIT's results underscore the superior performance of instruction-tuned LLMs, showcasing their proficiency in quality report generation, zero-shot capabilities, resilience to signal perturbation, and alignment with human expert evaluation. These findings emphasize the efficacy of MEIT and its potential for real-world clinical application.

cs.CL↗

arXiv2025

Efficient Long CoT Reasoning in Small Language Models

Recent large reasoning models such as DeepSeek-R1 exhibit strong complex problems solving abilities by generating long chain-of-thought (CoT) reasoning steps. It is challenging to directly train small language models (SLMs) to emerge long CoT. Thus, distillation becomes a practical method to enable SLMs for such reasoning ability. However, the long CoT often contains a lot of redundant contents (e.g., overthinking steps) which may make SLMs hard to learn considering their relatively poor capacity and generalization. To address this issue, we propose a simple-yet-effective method to prune unnecessary steps in long CoT, and then employ an on-policy method for the SLM itself to curate valid and useful long CoT training data. In this way, SLMs can effectively learn efficient long CoT reasoning and preserve competitive performance at the same time. Experimental results across a series of mathematical reasoning benchmarks demonstrate the effectiveness of the proposed method in distilling long CoT reasoning ability into SLMs which maintains the competitive performance but significantly reduces generating redundant reasoning steps.

cs.CL↗

arXiv2025

MMedPO: Aligning Medical Vision-Language Models with Clinical-Aware Multimodal Preference Optimization

The advancement of Large Vision-Language Models (LVLMs) has propelled their application in the medical field. However, Medical LVLMs (Med-LVLMs) encounter factuality challenges due to modality misalignment, where the models prioritize textual knowledge over visual input, leading to hallucinations that contradict information in medical images. Previous attempts to enhance modality alignment in Med-LVLMs through preference optimization have inadequately mitigated clinical relevance in preference data, making these samples easily distinguishable and reducing alignment effectiveness. To address this challenge, we propose MMedPO, a novel multimodal medical preference optimization approach that considers the clinical relevance of preference samples to enhance Med-LVLM alignment. MMedPO curates multimodal preference data by introducing two types of dispreference: (1) plausible hallucinations injected through target Med-LVLMs or GPT-4o to produce medically inaccurate responses, and (2) lesion region neglect achieved through local lesion-noising, disrupting visual understanding of critical areas. We then calculate clinical relevance for each sample based on scores from multiple Med-LLMs and visual tools, and integrate these scores into the preference optimization process as weights, enabling effective alignment. Our experiments demonstrate that MMedPO significantly enhances factual accuracy in Med-LVLMs, achieving substantial improvements over existing preference optimization methods by averaging 14.2% and 51.7% across the Med-VQA and report generation tasks. Our code are available in https://github.com/aiming-lab/MMedPO.

cs.CV↗

arXiv2025

ReAgent-V: A Reward-Driven Multi-Agent Framework for Video Understanding

Video understanding is fundamental to tasks such as action recognition, video reasoning, and robotic control. Early video understanding methods based on large vision-language models (LVLMs) typically adopt a single-pass reasoning paradigm without dynamic feedback, limiting the model's capacity to self-correct and adapt in complex scenarios. Recent efforts have attempted to address this limitation by incorporating reward models and reinforcement learning to enhance reasoning, or by employing tool-agent frameworks. However, these approaches face several challenges, including high annotation costs, reward signals that fail to capture real-time reasoning states, and low inference efficiency. To overcome these issues, we propose ReAgent-V, a novel agentic video understanding framework that integrates efficient frame selection with real-time reward generation during inference. These reward signals not only guide iterative answer refinement through a multi-perspective reflection mechanism-adjusting predictions from conservative, neutral, and aggressive viewpoints-but also enable automatic filtering of high-quality data for supervised fine-tuning (SFT), direct preference optimization (DPO), and group relative policy optimization (GRPO). ReAgent-V is lightweight, modular, and extensible, supporting flexible tool integration tailored to diverse tasks. Extensive experiments on 12 datasets across three core applications-video understanding, video reasoning enhancement, and vision-language-action model alignment-demonstrate significant gains in generalization and reasoning, with improvements of up to 6.9%, 2.1%, and 9.8%, respectively, highlighting the effectiveness and versatility of the proposed framework.

cs.CV↗

arXiv2025

Autoregressive Models in Vision: A Survey

Autoregressive modeling has been a huge success in the field of natural language processing (NLP). Recently, autoregressive models have emerged as a significant area of focus in computer vision, where they excel in producing high-quality visual content. Autoregressive models in NLP typically operate on subword tokens. However, the representation strategy in computer vision can vary in different levels, i.e., pixel-level, token-level, or scale-level, reflecting the diverse and hierarchical nature of visual data compared to the sequential structure of language. This survey comprehensively examines the literature on autoregressive models applied to vision. To improve readability for researchers from diverse research backgrounds, we start with preliminary sequence representation and modeling in vision. Next, we divide the fundamental frameworks of visual autoregressive models into three general sub-categories, including pixel-based, token-based, and scale-based models based on the representation strategy. We then explore the interconnections between autoregressive models and other generative models. Furthermore, we present a multifaceted categorization of autoregressive models in computer vision, including image generation, video generation, 3D generation, and multimodal generation. We also elaborate on their applications in diverse domains, including emerging domains such as embodied AI and 3D medical AI, with about 250 related references. Finally, we highlight the current challenges to autoregressive models in vision with suggestions about potential research directions. We have also set up a Github repository to organize the papers included in this survey at: https://github.com/ChaofanTao/Autoregressive-Models-in-Vision-Survey.

cs.CV↗

arXiv2025

From EduVisBench to EduVisAgent: A Benchmark and Multi-Agent Framework for Reasoning-Driven Pedagogical Visualization

While foundation models (FMs), such as diffusion models and large vision-language models (LVLMs), have been widely applied in educational contexts, their ability to generate pedagogically effective visual explanations remains limited. Most existing approaches focus primarily on textual reasoning, overlooking the critical role of structured and interpretable visualizations in supporting conceptual understanding. To better assess the visual reasoning capabilities of FMs in educational settings, we introduce EduVisBench, a multi-domain, multi-level benchmark. EduVisBench features diverse STEM problem sets requiring visually grounded solutions, along with a fine-grained evaluation rubric informed by pedagogical theory. Our empirical analysis reveals that existing models frequently struggle with the inherent challenge of decomposing complex reasoning and translating it into visual representations aligned with human cognitive processes. To address these limitations, we propose EduVisAgent, a multi-agent collaborative framework that coordinates specialized agents for instructional planning, reasoning decomposition, metacognitive prompting, and visualization design. Experimental results show that EduVisAgent substantially outperforms all baselines, achieving a 40.2% improvement and delivering more educationally aligned visualizations. EduVisBench and EduVisAgent are available at https://github.com/aiming-lab/EduVisBench and https://github.com/aiming-lab/EduVisAgent.

cs.AI↗

arXiv2025

In-context Demonstration Matters: On Prompt Optimization for Pseudo-Supervision Refinement

Large language models (LLMs) have achieved great success across diverse tasks, and fine-tuning is sometimes needed to further enhance generation quality. Most existing methods rely on human supervision or parameter retraining, both of which are costly in terms of data collection and computational resources. To handle these challenges, a direct solution is to generate ``high-confidence'' data from unsupervised downstream tasks and use them for in-context prompting or prompt optimization to refine the pseudo-supervision. However, relying solely on such data may lead to overfitting. In this paper, we leverage the in-context learning (ICL) abilities of LLMs and propose a novel approach, pseudo-supervised demonstrations aligned prompt optimization (PAPO) algorithm, which jointly refines both the prompt and the overall pseudo-supervision. The proposed learning objective ensures that the optimized prompt guides the LLM to generate consistent responses for a given input when pseudo-supervised data from the downstream task are used as demonstrations, enabling refinement over the entire pseudo-supervision. The prompt is optimized by translating gradient signals into textual critiques, which serve as feedback to iteratively refine the prompt and model responses. Theoretical analysis in a simplified classification setting shows that the refined pseudo-supervision exhibits a geometric clustering structure, helping to mitigate overfitting. Experiments on question answering, natural language inference benchmarks, and a real-world molecule optimization task, show the effectiveness of the proposed algorithm.

cs.CL↗

arXiv2025

WOMD-Reasoning: A Large-Scale Dataset for Interaction Reasoning in Driving

Language models uncover unprecedented abilities in analyzing driving scenarios, owing to their limitless knowledge accumulated from text-based pre-training. Naturally, they should particularly excel in analyzing rule-based interactions, such as those triggered by traffic laws, which are well documented in texts. However, such interaction analysis remains underexplored due to the lack of dedicated language datasets that address it. Therefore, we propose Waymo Open Motion Dataset-Reasoning (WOMD-Reasoning), a comprehensive large-scale Q&As dataset built on WOMD focusing on describing and reasoning traffic rule-induced interactions in driving scenarios. WOMD-Reasoning also presents by far the largest multi-modal Q&A dataset, with 3 million Q&As on real-world driving scenarios, covering a wide range of driving topics from map descriptions and motion status descriptions to narratives and analyses of agents' interactions, behaviors, and intentions. To showcase the applications of WOMD-Reasoning, we design Motion-LLaVA, a motion-language model fine-tuned on WOMD-Reasoning. Quantitative and qualitative evaluations are performed on WOMD-Reasoning dataset as well as the outputs of Motion-LLaVA, supporting the data quality and wide applications of WOMD-Reasoning, in interaction predictions, traffic rule compliance plannings, etc. The dataset and its vision modal extension are available on https://waymo.com/open/download/. The codes & prompts to build it are available on https://github.com/yhli123/WOMD-Reasoning.

cs.RO↗

arXiv2025

CellTypeAgent: Trustworthy cell type annotation with Large Language Models

Cell type annotation is a critical yet laborious step in single-cell RNA sequencing analysis. We present a trustworthy large language model (LLM)-agent, CellTypeAgent, which integrates LLMs with verification from relevant databases. CellTypeAgent achieves higher accuracy than existing methods while mitigating hallucinations. We evaluated CellTypeAgent across nine real datasets involving 303 cell types from 36 tissues. This combined approach holds promise for more efficient and reliable cell type annotation.

q-bio.GN↗

arXiv2025

Anyprefer: An Agentic Framework for Preference Data Synthesis

High-quality preference data is essential for aligning foundation models with human values through preference learning. However, manual annotation of such data is often time-consuming and costly. Recent methods often adopt a self-rewarding approach, where the target model generates and annotates its own preference data, but this can lead to inaccuracies since the reward model shares weights with the target model, thereby amplifying inherent biases. To address these issues, we propose Anyprefer, a framework designed to synthesize high-quality preference data for aligning the target model. Anyprefer frames the data synthesis process as a cooperative two-player Markov Game, where the target model and the judge model collaborate together. Here, a series of external tools are introduced to assist the judge model in accurately rewarding the target model's responses, mitigating biases in the rewarding process. In addition, a feedback mechanism is introduced to optimize prompts for both models, enhancing collaboration and improving data quality. The synthesized data is compiled into a new preference dataset, Anyprefer-V1, consisting of 58K high-quality preference pairs. Extensive experiments show that Anyprefer significantly improves model alignment performance across four main applications, covering 21 datasets, achieving average improvements of 18.55% in five natural language generation datasets, 3.66% in nine vision-language understanding datasets, 30.05% in three medical image analysis datasets, and 16.00% in four visuo-motor control tasks.

cs.LG↗

arXiv2025

CREAM: Consistency Regularized Self-Rewarding Language Models

Recent self-rewarding large language models (LLM) have successfully applied LLM-as-a-Judge to iteratively improve the alignment performance without the need of human annotations for preference data. These methods commonly utilize the same LLM to act as both the policy model (which generates responses) and the reward model (which scores and ranks those responses). The ranked responses are then used as preference pairs to train the LLM via direct alignment technologies (e.g. DPO). However, it is noteworthy that throughout this process, there is no guarantee of accuracy in the rewarding and ranking, which is critical for ensuring accurate rewards and high-quality preference data. Empirical results from relatively small LLMs (e.g., 7B parameters) also indicate that improvements from self-rewarding may diminish after several iterations in certain situations, which we hypothesize is due to accumulated bias in the reward system. This bias can lead to unreliable preference data for training the LLM. To address this issue, we first formulate and analyze the generalized iterative preference fine-tuning framework for self-rewarding language model. We then introduce the regularization to this generalized framework to mitigate the overconfident preference labeling in the self-rewarding process. Based on this theoretical insight, we propose a Consistency Regularized sElf-rewarding lAnguage Model (CREAM) that leverages the consistency of rewards across different iterations to regularize the self-rewarding training, helping the model to learn from more reliable preference data. With this explicit regularization, our empirical results demonstrate the superiority of CREAM in improving both reward consistency and alignment performance. The code is publicly available at https://github.com/Raibows/CREAM.

cs.LG↗

arXiv2025

Synergistic Weak-Strong Collaboration by Aligning Preferences

Current Large Language Models (LLMs) excel in general reasoning yet struggle with specialized tasks requiring proprietary or domain-specific knowledge. Fine-tuning large models for every niche application is often infeasible due to black-box constraints and high computational overhead. To address this, we propose a collaborative framework that pairs a specialized weak model with a general strong model. The weak model, tailored to specific domains, produces initial drafts and background information, while the strong model leverages its advanced reasoning to refine these drafts, extending LLMs' capabilities to critical yet specialized tasks. To optimize this collaboration, we introduce a collaborative feedback to fine-tunes the weak model, which quantifies the influence of the weak model's contributions in the collaboration procedure and establishes preference pairs to guide preference tuning of the weak model. We validate our framework through experiments on three domains. We find that the collaboration significantly outperforms each model alone by leveraging complementary strengths. Moreover, aligning the weak model with the collaborative preference further enhances overall performance.

cs.AI↗

arXiv2025

Fine-Grained Verifiers: Preference Modeling as Next-token Prediction in Vision-Language Alignment

The recent advancements in large language models (LLMs) and pre-trained vision models have accelerated the development of vision-language large models (VLLMs), enhancing the interaction between visual and linguistic modalities. Despite their notable success across various domains, VLLMs face challenges in modality alignment, which can lead to issues like hallucinations and unsafe content generation. Current alignment techniques often rely on coarse feedback and external datasets, limiting scalability and performance. In this paper, we propose FiSAO (Fine-Grained Self-Alignment Optimization), a novel self-alignment method that utilizes the model's own visual encoder as a fine-grained verifier to improve vision-language alignment without the need for additional data. By leveraging token-level feedback from the vision encoder, FiSAO significantly improves vision-language alignment, even surpassing traditional preference tuning methods that require additional data. Through both theoretical analysis and experimental validation, we demonstrate that FiSAO effectively addresses the misalignment problem in VLLMs, marking the first instance of token-level rewards being applied to such models.

cs.CV↗

arXiv2025

Token Level Routing Inference System for Edge Devices

The computational complexity of large language model (LLM) inference significantly constrains their deployment efficiency on edge devices. In contrast, small language models offer faster decoding and lower resource consumption but often suffer from degraded response quality and heightened susceptibility to hallucinations. To address this trade-off, collaborative decoding, in which a large model assists in generating critical tokens, has emerged as a promising solution. This paradigm leverages the strengths of both model types by enabling high-quality inference through selective intervention of the large model, while maintaining the speed and efficiency of the smaller model. In this work, we present a novel collaborative decoding inference system that allows small models to perform on-device inference while selectively consulting a cloud-based large model for critical token generation. Remarkably, the system achieves a 60% performance gain on CommonsenseQA using only a 0.5B model on an M1 MacBook, with under 7% of tokens generation uploaded to the large model in the cloud.

cs.CL↗

arXiv2025

Weak-for-Strong: Training Weak Meta-Agent to Harness Strong Executors

Efficiently leveraging of the capabilities of contemporary large language models (LLMs) is increasingly challenging, particularly when direct fine-tuning is expensive and often impractical. Existing training-free methods, including manually or automated designed workflows, typically demand substantial human effort or yield suboptimal results. This paper proposes Weak-for-Strong Harnessing (W4S), a novel framework that customizes smaller, cost-efficient language models to design and optimize workflows for harnessing stronger models. W4S formulates workflow design as a multi-turn markov decision process and introduces reinforcement learning for agentic workflow optimization (RLAO) to train a weak meta-agent. Through iterative interaction with the environment, the meta-agent learns to design increasingly effective workflows without manual intervention. Empirical results demonstrate the superiority of W4S that our 7B meta-agent, trained with just one GPU hour, outperforms the strongest baseline by 2.9% ~ 24.6% across eleven benchmarks, successfully elevating the performance of state-of-the-art models such as GPT-3.5-Turbo and GPT-4o. Notably, W4S exhibits strong generalization capabilities across both seen and unseen tasks, offering an efficient, high-performing alternative to directly fine-tuning strong models.

cs.AI↗