arXiv subjects

Hyam Omar Ali

Publications and source records attributed to Hyam Omar Ali.

4 recordsLinked to original sources

arXiv2026

AI for Mycetoma Diagnosis in Histopathological Images: The MICCAI 2024 Challenge

Mycetoma is a neglected tropical disease caused by fungi or bacteria leading to severe tissue damage and disabilities. It affects poor and rural communities and presents medical challenges and socioeconomic burdens on patients and healthcare systems in endemic regions worldwide. Mycetoma diagnosis is a major challenge in mycetoma management, particularly in low-resource settings where expert pathologists are limited. To address this challenge, this paper presents an overview of the Mycetoma MicroImage: Detect and Classify Challenge (mAIcetoma) which was organized to advance mycetoma diagnosis through AI solutions. mAIcetoma focused on developing automated models for segmenting mycetoma grains and classifying mycetoma types from histopathological images. The challenge attracted the attention of several teams worldwide to participate and five finalist teams fulfilled the challenge objectives. The teams proposed various deep learning architectures for the ultimate goal of this challenge. Mycetoma database (MyData) was provided to participants as a standardized dataset to run the proposed models. Those models were evaluated using evaluation metrics. Results showed that all the models achieved high segmentation accuracy, emphasizing the necessitate of grain detection as a critical step in mycetoma diagnosis. In addition, the top-performing models show a significant performance in classifying mycetoma types.

cs.CV↗

arXiv2026

Self-Supervised Super-Resolution for Sentinel-5P Hyperspectral Images

Sentinel-5P (S5P) plays a critical role in atmospheric monitoring; however, its spatial resolution limits fine-scale analysis. Existing super-resolution (SR) approaches rely on supervised learning with synthetic low-resolution (LR) data, since true high-resolution (HR) data do not exist, limiting their applicability to real observations. We propose a self-supervised hyperspectral SR framework for S5P that enables training without HR ground truth. The method combines Stein's Unbiased Risk Estimator (SURE) with an equivariant imaging constraint, incorporating the S5P degradation operator and noise statistics derived from signal-to-noise ratio (SNR) metadata. We also introduce depthwise separable convolution U-Net architectures designed for efficiency and spectral fidelity. The framework is evaluated in two settings: (i) LR-HR, where synthetic LR data are used for direct comparison with supervised learning, and (ii) GT-SHR, where super-resolved images surpass the native spatial resolution without HR reference. Results across multiple bands show that self-supervised models achieve performance comparable to supervised methods while maintaining strong consistency. Qualitative analysis shows improved spatial detail over bicubic interpolation, and validation with EMIT data confirms that reconstructed structures are physically meaningful. Code is available at https://github.com/hyamomar/Sentinel-5P-Super-Resolution/tree/main/self_supervised

cs.CV↗

arXiv2025

Depth Separable architecture for Sentinel-5P Super-Resolution

Sentinel-5P (S5P) satellite provides atmospheric measurements for air quality and climate monitoring. While the S5P satellite offers rich spectral resolution, it inherits physical limitations that restricts its spatial resolution. Super-resolution (SR) techniques can overcome these limitations and enhance the spatial resolution of S5P data. In this work, we introduce a novel SR model specifically designed for S5P data that have eight spectral bands with around 500 channels for each band. Our proposed S5-DSCR model relies on Depth Separable Convolution (DSC) architecture to effectively perform spatial SR by exploiting cross-channel correlations. Quantitative evaluation demonstrates that our model outperforms existing methods for the majority of the spectral bands. This work highlights the potential of leveraging DSC architecture to address the challenges of hyperspectral SR. Our model allows for capturing fine details necessary for precise analysis and paves the way for advancements in air quality monitoring as well as remote sensing applications.

eess.IV↗

arXiv2024

MyData: A Comprehensive Database of Mycetoma Tissue Microscopic Images for Histopathological Analysis

Mycetoma is a chronic and neglected inflammatory disease prevalent in tropical and subtropical regions. It can lead to severe disability and social stigma. The disease is classified into two types based on the causative microorganisms: eumycetoma (fungal) and actinomycetoma (bacterial). Effective treatment strategies depend on accurately identifying the causative agents. Current identification methods include molecular, cytological, and histopathological techniques, as well as grain culturing. Among these, histopathological techniques are considered optimal for use in endemic areas, but they require expert pathologists for accurate identification, which can be challenging in rural areas lacking such expertise. The advent of digital pathology and automated image analysis algorithms offers a potential solution. This report introduces a novel dataset designed for the automated detection and classification of mycetoma using histopathological images. It includes the first database of microscopic images of mycetoma tissue, detailing the entire pipeline from species distribution and patient sampling to acquisition protocols through histological procedures. The dataset consists of images from 142 patients, totalling 864 images, each annotated with binary masks indicating the presence of grains, facilitating both detection and segmentation tasks.

eess.IV↗