arXiv subjects

I. Berdakin

Publications and source records attributed to I. Berdakin.

5 recordsLinked to original sources

arXiv2021

Boosting micromachine studies with Stokesian Dynamics

Artificial microswimmers, nano and microrobots, are essential in many applications from engineering to biology and medicine. We present a Stokesian Dynamics study of the dynamical properties and efficiency of one of the simplest artificial swimmer, the three linked spheres swimmer (TLS), extensively shown to be an excellent and model example of a deformable micromachine. Results for two different swimming strokes are compared with an approximate solution based on point force interactions. While this approximation accurately reproduces the solutions for swimmers with long arms and strokes of small amplitude, it fails when the amplitude of the stroke is such that the spheres come close together, a condition where indeed the largest efficiencies are obtained. We find that swimmers with a "square stroke cycle" result more efficient than those with "circular stroke cycle" when the swimmer arms are long compared with the sphere radius, but the differences between the two strokes are smaller when the arms of the swimmers are short. This extended theoretical research of TLS incorporates a much precise description of the swimmer hydrodynamics, demonstrating the relevance of considering the finite size of the constitutive microswimmers spheres. This work expects to trigger future innovative steps contributing to the design of micro and nanomachines and its applications.

cond-mat.soft↗

arXiv2015

Disrupting the wall accumulation of human sperm cells by artificial corrugation

Many self-propelled microorganisms are attracted to surfaces. This makes their dynamics in restricted geometries very different from that observed in the bulk. Swimming along walls is beneficial for directing and sorting cells, but may be detrimental if homogeneous populations are desired, such as in counting microchambers. In this work, we characterize the motion of human sperm cells $60 μm$ long, strongly confined to $25 μm$ shallow chambers. We investigate the nature of the cell trajectories between the confining surfaces and their accumulation near the borders. Observed cell trajectories are composed of a succession of quasi-circular and quasi-linear segments. This suggests that the cells follow a path of intermittent trappings near the top and bottom surfaces separated by stretches of quasi-free motion in between the two surfaces, as confirmed by depth resolved confocal microscopy studies. We show that the introduction of artificial petal-shaped corrugation in the lateral boundaries removes the tendency of cells to accumulate near the borders, an effect which we hypothesize may be valuable for microfluidic applications in biomedicine.

cond-mat.soft↗

arXiv2014

Geometrical guidance and trapping transition of human sperm cells

The guidance of human sperm cells under confinement in quasi 2D microchambers is investigated using a purely physical method to control their distribution. Transport property measurements and simulations are performed with dilute sperm populations, for which effects of geometrical guidance and concentration are studied in detail. In particular, a trapping transition at convex angular wall features is identified and analyzed. We also show that highly efficient microratchets can be fabricated by using curved asymmetric obstacles to take advantage of the spermatozoa specific swimming strategy.

cond-mat.soft↗

arXiv2013

Quantifying the sorting efficiency of self-propelled run-and-tumble swimmers by geometrical ratchets

Suitable asymmetric microstructures can be used to control the direction of motion in microorganism populations. This rectification process makes it possible to accumulate swimmers in a region of space or to sort different swimmers. Here we study numerically how the separation process depends on the specific motility strategies of the microorganisms involved. Crucial properties such as the separation efficiency and the separation time for two bacterial strains are precisely defined and evaluated. In particular, the sorting of two bacterial populations inoculated in a box consisting of a series of chambers separated by columns of asymmetric obstacles is investigated. We show how the sorting efficiency is enhanced by these obstacles and conclude that this kind of sorting can be efficiently used even when the involved populations differ only in one aspect of their swimming strategy.

physics.bio-ph↗

arXiv2013

Influence of swimming strategy on microorganism separation by asymmetric obstacles

It has been shown that a nanoliter chamber separated by a wall of asymmetric obstacles can lead to an inhomogeneous distribution of self-propelled microorganisms. Although it is well established that this rectification effect arises from the interaction between the swimmers and the non-centrosymmetric pillars, here we demonstrate numerically that its efficiency is strongly dependent on the detailed dynamics of the individual microorganism. In particular, for the case of run-and-tumble dynamics, the distribution of run lengths, the rotational diffusion and the partial preservation of run orientation memory through a tumble are important factors when computing the rectification efficiency. In addition, we optimize the geometrical dimensions of the asymmetric pillars in order to maximize the swimmer concentration and we illustrate how it can be used for sorting by swimming strategy in a long array of parallel obstacles.

physics.bio-ph↗