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I. K. Kominis

Publications and source records attributed to I. K. Kominis.

At least 37 records · Page 2Linked to original sources
arXiv2016

Quantum-limited biochemical magnetometers designed using the Fisher information and quantum reaction control

Radical-ion pairs and their reactions have triggered the study of quantum effects in biological systems. This is because they exhibit a number of effects best understood within quantum information science, and at the same time are central in understanding the avian magnetic compass and the spin transport dynamics in photosynthetic reaction centers. Here we address radical-pair reactions from the perspective of quantum metrology. Since the coherent spin motion of radical-pairs is effected by an external magnetic field, these spin-dependent reactions essentially realize a biochemical magnetometer. Using the quantum Fisher information, we find the fundamental quantum limits to the magnetic sensitivity of radical-pair magnetometers. We then explore how well the usual measurement scheme considered in radical-pair reactions, the measurement of reaction yields, approaches the fundamental limits. In doing so, we find the optimal hyperfine interaction Hamiltonian that leads to the best magnetic sensitivity as obtained from reaction yields. This is still an order of magnitude smaller than the absolute quantum limit. Finally, we demonstrate that with a realistic quantum reaction control reminding of Ramsey interferometry, here presented as a quantum circuit involving the spin-exchange interaction and a recently proposed molecular switch, we can approach the fundamental quantum limit within a factor of 2. This work opens the application of well-advanced quantum metrology methods to biological systems.

quant-ph↗
arXiv2016

Revealing the properties of the radical-pair magnetoreceptor using pulsed photo-excitation timed with pulsed rf

The radical-pair mechanism is understood to underlie the magnetic navigation capability of birds and possibly other species. Experiments with birds have provided indirect and in cases conflicting evidence on the actual existence of this mechanism. We here propose a new experiment that can unambiguously identify the presence of the radical-pair magnetoreceptor in birds and unravel some of its basic properties. The proposed experiment is based on modulated light excitation with a pulsed laser, combined with delayed radio-frequency magnetic field pulses. We predict a resonance effect in the birds' magnetic orientation versus the rf-pulse delay time. The resonance's position reflects the singlet-triplet mixing time of the magnetoreceptor.

physics.bio-ph↗
arXiv2016

Quantum optical signatures in strong-field laser physics: Infrared photon counting in high-order-harmonic generation

We analytically describe the strong-field light-electron interaction using a quantized coherent laser state with arbitrary photon number. We obtain a light-electron wave function which is a closed-form solution of the time-dependent Schrodinger equation (TDSE). This wave function provides information about the quantum optical features of the interaction not accessible by semi-classical theories. With this approach we can reveal the quantum optical properties of high harmonic generation (HHG) process in gases by measuring the photon statistics of the transmitted infrared (IR) laser radiation. This work can lead to novel experiments in high-resolution spectroscopy in extreme-ultraviolet (XUV) and attosecond science without the need to measure the XUV light, while it can pave the way for the development of intense non-classical light sources.

physics.atom-ph↗
arXiv2016

The radical-pair mechanism as a paradigm for the emerging science of quantum biology

The radical-pair mechanism was introduced in the 1960's to explain anomalously large EPR and NMR signals in chemical reactions of organic molecules. It has evolved to the cornerstone of spin chemistry, the study of the effect electron and nuclear spins have on chemical reactions, with the avian magnetic compass mechanism and the photosynthetic reaction center dynamics being prominent biophysical manifestations of such effects. In recent years the radical-pair mechanism was shown to be an ideal biological system where the conceptual tools of quantum information science can be fruitfully applied. We will here review recent work making the case that the radical-pair mechanism is indeed a major driving force of the emerging field of quantum biology.

physics.bio-ph↗
arXiv2015

Quantum trajectory tests of radical-pair quantum dynamics in CIDNP measurements of photosynthetic reaction centers

Chemically induced dynamic nuclear polarization is a ubiquitous phenomenon in photosynthetic reaction centers. The relevant nuclear spin observables are a direct manifestation of the radical-pair mechanism. We here use quantum trajectories to describe the time evolution of radical-pairs, and compare their prediction of nuclear spin observables to the one derived from the radical-pair master equation. While our approach provides a consistent description, we unravel a major inconsistency within the conven- tional theory, thus challenging the theoretical interpretation of numerous CIDNP experiments sensitive to radical-pair reaction kinetics.

physics.chem-ph↗
arXiv2014

Retrodictive derivation of the radical-ion-pair master equation and Monte-Carlo simulation with single-molecule quantum trajectories

Radical-ion-pair reactions, central in photosynthesis and the avian magnetic compass mechanism, have recently shown to be a paradigm system for applying quantum information science in a biochemical setting. The fundamental quantum master equation describing radical-ion-pair reactions is still under debate. We here use quantum retrodiction to produce a rigorous refinement of the theory put forward in Phys. Rev. E {\bf 83}, 056118 (2011). We also provide a rigorous analysis of the measure of singlet-triplet coherence required for deriving the radical-pair master equation. A Monte-Carlo simulation with single-molecule quantum trajectories supports the self-consistency of our approach.

quant-ph↗
arXiv2014

Spin-noise correlations and spin-noise exchange driven by low-field spin-exchange collisions

The physics of spin exchange collisions have fueled several discoveries in fundamental physics and numerous applications in medical imaging and nuclear magnetic resonance. We here report on the experimental observation and theoretical justification of spin-noise exchange, the transfer of spin-noise from one atomic species to another. The signature of spin-noise exchange is an increase of the total spin-noise power at low magnetic fields, on the order of 1 mG, where the two-species spin-noise resonances overlap. The underlying physical mechanism is the two-species spin-noise correlation induced by spin-exchange collisions.

physics.atom-ph↗
arXiv2014

Lamb shift in radical-ion pairs produces a singlet-triplet energy splitting in photosynthetic reaction centers

Radical-ion pairs, fundamental for understanding photosynthesis and the avian magnetic compass, were recently shown to be biological open quantum systems. We here show that the coupling of the radical-pair's spin degrees of freedom to its decohering vibrational reservoir leads to a shift of the radical-pair's magnetic energy levels. The Lamb shift Hamiltonian is diagonal in the singlet-triplet basis, and results in a singlet-triplet energy splitting physically indistinguishable from an exchange interaction. This could have significant implications for understanding the energy level structure and the dynamics of photosynthetic reaction centers.

physics.bio-ph↗
arXiv2014

Towards Quantum Information Processing at the Attosecond Timescale

Coherent processing of quantum information and attosecond science had so far little in common. We here show that recent data in high harmonic emission reveal quantum information processing at the attosecond timescale. By observing the interference pattern created by the spatiotemporal overlap of photons emitted by two interfering electron paths we generate a photon Hadamard gate and thus erase the electron-trajectory information. This allows the measurement of the relative phase in electron-trajectory quantum superpositions and establishes the era of electron-photon quantum coherence and entanglement at the attosecond timescale of high-field physics.

physics.atom-ph↗
arXiv2013

Quantum measurement corrections to CIDNP in photosynthetic reaction centers

Chemically induced dynamic nuclear polarization is a signature of spin order appearing in many photosynthetic reaction centers. Such polarization, significantly enhanced above thermal equilibrium, is known to result from the nuclear spin sorting inherent in the radical pair mechanism underlying long-lived charge-separated states in photosynthetic reaction centers. We will here show that the recently understood fundamental quantum dynamics of radical-ion-pair reactions open up a new and completely unexpected venue towards obtaining CIDNP signals. The fundamental decoherence mechanism inherent in the recombination process of radical pairs is shown to produce nuclear spin polarizations on the order of $10^4$ times or more higher than the thermal equilibrium value at earth's magnetic field relevant to natural photosynthesis. This opens up the possibility of a fundamentally new exploration of the biological significance of high nuclear polarizations in photosynthesis.

quant-ph↗
arXiv2013

Collision Kernels from Velocity-Selective Optical Pumping with Magnetic Depolarization

We experimentally demonstrate how magnetic depolarization of velocity-selective optical pumping can be used to single out the collisional cusp kernel best describing spin and velocity relaxing collisions between potassium atoms and low pressure helium. The range of pressures and transverse fields used simulate the novel optical pumping regime pertinent to sodium guidestars employed in adaptive optics. We measure the precession of spin-velocity modes under the application of transverse magnetic fields, simulating the natural configuration of mesospheric sodium optical pumping in the geomagnetic field. We also provide a full theoretical account of the experimental data using the recently developed cusp kernels, which realistically quantify velocity damping collisions in this novel optical pumping regime. A single cusp kernel with a sharpness $s=13\pm 2$ provides a global fit to the K-He data.

physics.atom-ph↗
arXiv2012

Reactant-Product Quantum Coherence in Electron Transfer Reactions

We investigate the physical meaning of quantum superposition states between reactants and products in electron transfer reactions. We show that such superpositions are strongly suppressed and to leading orders of perturbation theory do not pertain in electron transfer reactions. This is because of the intermediate manifold of states separating the reactants from the products. We provide an intuitive description of these considerations with Feynman diagrams. We also discuss the relation of such quantum coherences to understanding the fundamental quantum dynamics of spin-selective radical-ion-pair reactions.

quant-ph↗
arXiv2012

Magnetic Sensitivity and Entanglement Dynamics of the Chemical Compass

We present the quantum limits to the magnetic sensitivity of a new kind of magnetometer based on biochemical reactions. Radical-ion-pair reactions, the biochemical system underlying the chemical compass, are shown to offer a new and unique physical realization of a magnetic field sensor competitive to modern atomic or condensed matter magnetometers. We elaborate on the quantum coherence and entanglement dynamics of this sensor, showing that they provide the physical basis for testing our understanding of the fundamental quantum dynamics of radical-ion-pair reactions.

quant-ph↗
arXiv2012

The Quantum Zeno Effect Immunizes the Avian Compass Against the Deleterious Effects of Exchange and Dipolar Interactions

Magnetic-sensitive radical-ion-pair reactions are understood to underlie the biochemical magnetic compass used by avian species for navigation. Recent experiments have provided growing evidence for the radical-ion-pair magnetoreception mechanism, while recent theoretical advances have unravelled the quantum nature of radical-ion-pair reactions, which were shown to manifest a host of quantum-information-science concepts and effects, like quantum measurement, quantum jumps and the quantum Zeno effect. We here show that the quantum Zeno effect provides for the robustness of the avian compass mechanism, and immunizes it's magnetic and angular sensitivity against the deleterious and molecule-specific exchange and dipolar interactions.

quant-ph↗
arXiv2011

Photon statistics as an experimental test discriminating between theories of spin-selective radical-ion-pair reactions

Radical-ion-pair reactions were recently shown to represent a rich biophysical laboratory for the application of quantum measurement theory methods and concepts. We here propose a concrete experimental test that can clearly discriminate among the fundamental master equations currently attempting to describe the quantum dynamics of these reactions. The proposed measurement based on photon statistics of fluorescing radical pairs is shown to be model-independent and capable of elucidating the singlet-triplet decoherence inherent in the radical-ion-pair recombination process.

quant-ph↗
arXiv2011

Radical-ion-pair reactions are the biochemical equivalent of the optical double slit experiment

Radical-ion-pair reactions were recently shown to represent a rich biophysical laboratory for the application of quantum measurement theory methods and concepts. We here show that radical-ion-pair reactions essentially form a non-linear biochemical double slit interferometer. Quantum coherence effects are visible when "which-path" information is limited, and the incoherent limit is approached when measurement-induced decoherence sets in. Based on this analogy with the optical double slit experiment we derive and elaborate on the fundamental master equation of spin-selective radical-ion-pair reactions that covers the continuous range from complete incoherence to maximum singlet-triplet coherence.

quant-ph↗