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I. Nemenman

Publications and source records attributed to I. Nemenman.

3 recordsLinked to original sources

Time-dependent corrections to effective rate and event statistics in Michaelis-Menten kinetics

We generalize the concept of the geometric phase in stochastic kinetics to a noncyclic evolution. Its application is demonstrated on kinetics of the Michaelis-Menten reaction. It is shown that the nonperiodic geometric phase is responsible for the correction to the Michaelis-Menten law when parameters, such as a substrate concentration, are changing with time. We apply these ideas to a model of chemical reactions in a bacterial culture of a growing size, where the geometric correction qualitatively changes the outcome of the reaction kinetics.

q-bio.QM

The unified geometric theory of mesoscopic stochastic pumps and reversible ratchets

We construct a unifying theory of geometric effects in mesoscopic stochastic kinetics. We demonstrate that the adiabatic pump and the reversible ratchet effects, as well as similar new phenomena in other domains, such as in epidemiology, all follow from geometric phase contributions to the effective action in the stochastic path integral representation of the moment generating function. The theory provides the universal technique for identification, prediction and calculation of pump-like phenomena in an arbitrary mesoscopic stochastic framework.

cond-mat.stat-mech

Minimal subtraction and the Callan-Symanzik equation

The usual proof of renormalizability using the Callan-Symanzik equation makes explicit use of normalization conditions. It is shown that demanding that the renormalization group functions take the form required for minimal subtraction allows one to prove renormalizability using the Callan-Symanzik equation, without imposing normalization conditions. Scalar field theory and quantum electrodynamics are treated.

hep-th