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Iain Moffatt

Publications and source records attributed to Iain Moffatt.

At least 37 records · Page 2Linked to original sources
arXiv2015

Excluded minors and the ribbon graphs of knots

In this paper we consider minors of ribbon graphs (or, equivalently, cellularly embedded graphs). The theory of minors of ribbon graphs differs from that of graphs in that contracting loops is necessary and doing this can create additional vertices and components. Thus the ribbon graph minor relation is incompatible with the graph minor relation. We discuss excluded minor characterisations of minor closed families of ribbon graphs. Our main result is an excluded minor characterisation of the family of ribbon graphs that represent knot and link diagrams.

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arXiv2015

On the ribbon graphs of links in real projective space

Every link diagram can be represented as a signed ribbon graph. However, different link diagrams can be represented by the same ribbon graphs. We determine how checkerboard colourable diagrams of links in real projective space, and virtual link diagrams, that are represented by the same ribbon graphs are related to each other. We also find moves that relate the diagrams of links in real projective space that give rise to (all-A) ribbon graphs with exactly one vertex.

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arXiv2014

The Las Vergnas Polynomial for embedded graphs

The Las Vergnas polynomial is an extension of the Tutte polynomial to cellularly embedded graphs. It was introduced by Michel Las Vergnas in 1978 as special case of his Tutte polynomial of a morphism of matroids. While the general Tutte polynomial of a morphism of matroids has a complete set of deletion-contraction relations, its specialisation to cellularly embedded graphs does not. Here we extend the Las Vergnas polynomial to graphs in pseudo-surfaces. We show that in this setting we can define deletion and contraction for embedded graphs consistently with the deletion and contraction of the underlying matroid perspective, thus yielding a version of the Las Vergnas polynomial with complete recursive definition. This also enables us to obtain a deeper understanding of the relationships among the Las Vergnas polynomial, the Bollobas-Riordan polynomial, and the Krushkal polynomial. We also take this opportunity to extend some of Las Vergnas' results on Eulerian circuits from graphs in surfaces of low genus to surfaces of arbitrary genus.

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arXiv2014

A note on recognizing an old friend in a new place: list coloring and the zero-temperature Potts model

Here we observe that list coloring in graph theory coincides with the zero-temperature antiferromagnetic Potts model with an external field. We give a list coloring polynomial that equals the partition function in this case. This is analogous to the well-known connection between the chromatic polynomial and the zero-temperature, zero-field, antiferromagnetic Potts model. The subsequent cross fertilization yields immediate results for the Potts model and suggests new research directions in list coloring.

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arXiv2014

Evaluations of topological Tutte polynomials

We find new properties of the topological transition polynomial of embedded graphs, $Q(G)$. We use these properties to explain the striking similarities between certain evaluations of Bollobás and Riordan's ribbon graph polynomial, $R(G)$, and the topological Penrose polynomial, $P(G)$. The general framework provided by $Q(G)$ also leads to several other combinatorial interpretations these polynomials. In particular, we express $P(G)$, $R(G)$, and the Tutte polynomial, $T(G)$, as sums of chromatic polynomials of graphs derived from $G$; show that these polynomials count $k$-valuations of medial graphs; show that $R(G)$ counts edge 3-colourings; and reformulate the Four Colour Theorem in terms of $R(G)$. We conclude with a reduction formula for the transition polynomial of the tensor product of two embedded graphs, showing that it leads to additional relations among these polynomials and to further combinatorial interpretations of $P(G)$ and $R(G)$.

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arXiv2014

DNA origami and the complexity of Eulerian circuits with turning costs

Building a structure using self-assembly of DNA molecules by origami folding requires finding a route for the scaffolding strand through the desired structure. When the target structure is a 1-complex (or the geometric realization of a graph), an optimal route corresponds to an Eulerian circuit through the graph with minimum turning cost. By showing that it leads to a solution to the 3-SAT problem, we prove that the general problem of finding an optimal route for a scaffolding strand for such structures is NP-hard. We then show that the problem may readily be transformed into a Traveling Salesman Problem (TSP), so that machinery that has been developed for the TSP may be applied to find optimal routes for the scaffolding strand in a DNA origami self-assembly process. We give results for a few special cases, showing for example that the problem remains intractable for graphs with maximum degree 8, but is polynomial time for 4-regular plane graphs if the circuit is restricted to following faces. We conclude with some implications of these results for related problems, such as biomolecular computing and mill routing problems.

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arXiv2013

The Potts model and chromatic functions of graphs

The $U$-polynomial of Noble and Welsh is known to have intimate connections with the Potts model as well as with several important graph polynomials. For each graph $G$, $U(G)$ is equivalent to Stanley's symmetric bad colouring polynomial $XB(G)$. Moreover Sarmiento established the equivalence between $U$ and the polychromate of Brylawski. Loebl defined the $q$-dichromate $B_q(G,x,y)$ as a function of a graph $G$ and three independent variables $q,x,y$, proved that it is equal to the partition function of the Potts model with variable number of states and with a certain external field contribution, and conjectured that the $q$-dichromate is equivalent to the $U$-polynomial. He also proposed a stronger conjecture on integer partitions. The aim of this paper is two-fold. We present a construction disproving Loebl's integer partitions conjecture, and we introduce a new function $B_{r,q}(G;x,k)$ which is also equal to the partition function of the Potts model with variable number of states and with a (different) external field contribution, and we show that $B_{r,q}(G;x,k)$ is equivalent to the $U$-polynomial and to Stanley's symmetric bad colouring polynomial.

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arXiv2012

Separability and the genus of a partial dual

Partial duality generalizes the fundamental concept of the geometric dual of an embedded graph. A partial dual is obtained by forming the geometric dual with respect to only a subset of edges. While geometric duality preserves the genus of an embedded graph, partial duality does not. Here we are interested in the problem of determining which edge sets of an embedded graph give rise to a partial dual of a given genus. This problem turns out to be intimately connected to the separability of the embedded graph. We determine how separability is related to the genus of a partial dual. We use this to characterize partial duals of graphs embedded in the plane, and in the real projective plane, in terms of a particular type of separation of an embedded graph. These characterizations are then used to determine a local move relating all partially dual graphs in the plane and in the real projective plane.

math.CO↗
arXiv2012

A Penrose polynomial for embedded graphs

We extend the Penrose polynomial, originally defined only for plane graphs, to graphs embedded in arbitrary surfaces. Considering this Penrose polynomial of embedded graphs leads to new identities and relations for the Penrose polynomial which can not be realized within the class of plane graphs. In particular, by exploiting connections with the transition polynomial and the ribbon group action, we find a deletion-contraction-type relation for the Penrose polynomial. We relate the Penrose polynomial of an orientable checkerboard colourable graph to the circuit partition polynomial of its medial graph and use this to find new combinatorial interpretations of the Penrose polynomial. We also show that the Penrose polynomial of a plane graph G can be expressed as a sum of chromatic polynomials of twisted duals of G. This allows us to obtain a new reformulation of the Four Colour Theorem.

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arXiv2012

Partial duals of plane graphs, separability and the graphs of knots

There is a well-known way to describe a link diagram as a (signed) plane graph, called its Tait graph. This concept was recently extended, providing a way to associate a set of embedded graphs (or ribbon graphs) to a link diagram. While every plane graph arises as a Tait graph of a unique link diagram, not every embedded graph represents a link diagram. Furthermore, although a Tait graph describes a unique link diagram, the same embedded graph can represent many different link diagrams. One is then led to ask which embedded graphs represent link diagrams, and how link diagrams presented by the same embedded graphs are related to one another. Here we answer these questions by characterizing the class of embedded graphs that represent link diagrams, and then using this characterization to find a move that relates all of the link diagrams that are presented by the same set of embedded graphs.

math.CO↗
arXiv2012

Bipartite partial duals and circuits in medial graphs

It is well known that a plane graph is Eulerian if and only if its geometric dual is bipartite. We extend this result to partial duals of plane graphs. We then characterize all bipartite partial duals of a plane graph in terms of oriented circuits in its medial graph.

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arXiv2012

On the Potts model partition function in an external field

We study the partition function of Potts model in an external (magnetic) field, and its connections with the zero-field Potts model partition function. Using a deletion-contraction formulation for the partition function Z for this model, we show that it can be expanded in terms of the zero-field partition function. We also show that Z can be written as a sum over the spanning trees, and the spanning forests, of a graph G. Our results extend to Z the well-known spanning tree expansion for the zero-field partition function that arises though its connections with the Tutte polynomial.

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arXiv2011

On the Seifert graphs of a link diagram and its parallels

Recently, Dasbach, Futer, Kalfagianni, Lin, and Stoltzfus extended the notion of a Tait graph by associating a set of ribbon graphs (or equivalently, embedded graphs) to a link diagram. Here we focus on Seifert graphs, which are the ribbon graphs of a knot or link diagram that arise from Seifert states. We provide a characterization of Seifert graphs in terms of Eulerian subgraphs. This characterization can be viewed as a refinement of the fact that Seifert graphs are bipartite. We go on to examine the family of ribbon graphs that arises by forming the parallels of a link diagram and determine how the genus of the ribbon graph of a $r$-fold parallel of a link diagram is related to that of the original link diagram.

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arXiv2011

The Tutte-Potts connection in the presence of an external magnetic field

The classical relationship between the Tutte polynomial of graph theory and the Potts model of statistical mechanics has resulted in valuable interactions between the disciplines. Unfortunately, it does not include the external magnetic fields that appear in most Potts model applications. Here we define the V-polynomial, which lifts the classical relationship between the Tutte polynomial and the zero field Potts model to encompass external magnetic fields. The V-polynomial generalizes Nobel and Welsh's W-polynomial, which extends the Tutte polynomial by incorporating vertex weights and adapting contraction to accommodate them. We prove that the variable field Potts model partition function (with its many specializations) is an evaluation of the V-polynomial, and hence a polynomial with deletion-contraction reduction and Fortuin-Kasteleyn type representation. This unifies an important segment of Potts model theory and brings previously successful combinatorial machinery, including complexity results, to bear on a wider range of statistical mechanics models.

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arXiv2011

A permanent formula for the Jones polynomial

The permanent of a square matrix is defined in a way similar to the determinant, but without using signs. The exact computation of the permanent is hard, but there are Monte-Carlo algorithms that can estimate general permanents. Given a planar diagram of a link L with $n$ crossings, we define a 7n by 7n matrix whose permanent equals to the Jones polynomial of L. This result accompanied with recent work of Freedman, Kitaev, Larson and Wang provides a Monte-Carlo algorithm to any decision problem belonging to the class BQP, i.e. such that it can be computed with bounded error in polynomial time using quantum resources.

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arXiv2010

Twisted duality for embedded graphs

We consider two operations on an edge of an embedded graph (or equivalently a ribbon graph): giving a half-twist to the edge and taking the partial dual with respect to the edge. These two operations give rise to an action of S_3^{|E(G)|}, the ribbon group, on G. The action of the ribbon group on embedded graphs extends the concepts of duality, partial duality and Petrie duality. We show that this ribbon group action gives a complete characterization of duality in that if G is any cellularly embedded graph with medial graph G_m, then the orbit of G under the group action is precisely the set of all graphs with medial graphs isomorphic (as abstract graphs) to G_m. We provide characterizations of special sets of twisted duals, such as the partial duals, of embedded graphs in terms of medial graphs and we show how different kinds of graph isomorphism give rise to these various notions of duality. The ribbon group action then leads to a deeper understanding of the properties of, and relationships among, various graph polynomials via the generalized transition polynomial which interacts naturally with the ribbon group action.

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arXiv2010

A characterization of partially dual graphs

In this paper, we extend the recently introduced concept of partially dual ribbon graphs to graphs. We then go on to characterize partial duality of graphs in terms of bijections between edge sets of corresponding graphs. This result generalizes a well known result of J. Edmonds in which natural duality of graphs is characterized in terms of edge correspondence, and gives a combinatorial characterization of partial duality.

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