arXiv subjects

Iason Andronis

Publications and source records attributed to Iason Andronis.

7 recordsLinked to original sources

arXiv2026

Kinetics of ferritin crystal formation and melting in acoustically levitated droplets

Understanding protein crystallization pathways is essential for controlling crystallization in structural biology, materials science, and pharmaceutical applications. Classical nucleation theory does not fully capture crystallization processes for several proteins, including ferritin. Here, we combine acoustic levitation with small- and wide-angle X-ray scattering (SAXS and WAXS) to monitor ferritin crystallization in evaporating aqueous polyethylene glycol (PEG) solutions. Acoustic levitation rapidly drives the droplets through a broad range of protein and polymer concentrations, enabling time-resolved measurements of crystallization during evaporation. The scattering data show that ferritin crystals form during evaporation and subsequently lose their crystalline order upon further dehydration. Varying the PEG molecular weight switches between distinct crystallization pathways: one dominated by attractive protein-protein interactions and another dominated by repulsive interactions and excluded-volume effects. Furthermore, we find that lower molecular weight PEG (1000 g/mol) suppresses the dehydration-induced loss of crystalline order observed for higher molecular weight PEG (6000 g/mol), providing a simple strategy for improving protein crystal stability.

cond-mat.soft↗

arXiv2026

Liquid-liquid phase separation precedes crystallization in supercooled water-glycerol solutions

Understanding the structural evolution of supercooled water-glycerol solutions is important for cryopreservation, yet distinguishing liquid-state transformations from ice crystallization remains challenging. Here, we investigate a deeply supercooled water-glycerol solution by X-ray photon correlation spectroscopy (XPCS) in ultra-small-angle X-ray scattering (USAXS) geometry, combined with wide-angle X-ray scattering (WAXS). This combination simultaneously captures the structural and dynamical evolution of the supercooled liquid upon quenching to cryogenic temperatures (172 K). We observe discontinuous changes in the liquid structure on molecular length scales and formation of microscale domains. The dynamics slow down during this stage and exhibit hyper-diffusive, ballistic-like relaxation. This transformation precedes ice crystallization, which we identify from the emergence of ice Bragg peaks in WAXS, allowing the two processes to be temporally separated. Phase-field (Cahn-Hilliard) simulations qualitatively reproduce the experimental observations and show that a spinodal-decomposition scenario is consistent with the measured scattering evolution. These findings are consistent with a liquid-liquid phase separation scenario preceding ice crystallization and provide a route to disentangle the two processes in supercooled aqueous systems.

cond-mat.soft↗

arXiv2025

X-ray photon correlation spectroscopy of hydrated lysozyme at elevated pressures

Pressure provides a powerful parameter to control the protein conformation state, which at sufficiently high values can lead to unfolding. Here, we investigate the effects of increasing pressure up to $0.4$ GPa on hydrated lysozyme proteins, by measuring the nanoscale stress relaxation induced and probed by X-rays. Structural and dynamical information at elevated pressures was obtained using X-ray photon correlation spectroscopy (XPCS) in combination with a diamond anvil cell (DAC). The dynamical analysis revealed a slowing down of the system up to $0.2$ GPa, followed by a re-acceleration at $0.4$ GPa. A similar non-monotonic behavior was observed both in the Porod and Kohlrausch-Williams-Watts (KWW) exponents, consistently indicating a crossover between $0.2$ and $0.4$ GPa. These findings suggest the presence of pressure-induced structural changes that impact protein collective stress-relaxation as the system transitions from a jammed state to an elastically driven regime. These results may be relevant for a deeper understanding of protein stability under compression as well as for practical high-pressure technologies, including food processing and pharmaceutical applications.

cond-mat.soft↗

arXiv2025

Depletion-Induced Interactions Modulate Nanoscale Protein Diffusion in Polymeric Crowder Solutions

Macromolecular crowding plays a crucial role in modulating protein dynamics in cellular and in vitro environments. Polymeric crowders such as dextran and Ficoll are known to induce entropic forces, including depletion interactions, that promote structural organization, but the nanoscale consequences for protein dynamics remain less well understood. Here, we employ megahertz X-ray photon correlation spectroscopy (MHz-XPCS) at the European XFEL to probe the dynamics of the protein ferritin in solutions containing sucrose, dextran, and Ficoll. We find that depletion-driven short-range attractions combined with long-range repulsions give rise to intermediate-range order (IRO) once the polysaccharide overlap concentration $c^*$ is exceeded. These IRO features fluctuate on microsecond to millisecond timescales, strongly modulating the collective dynamics of ferritin. The magnitude of these effects depends sensitively on crowder type, concentration, and molecular weight. Normalizing the crowder concentration by $c^*$ reveals scaling behavior in ferritin self-diffusion with a crossover near 2$c^*$, marking a transition from depletion-enhanced mobility to viscosity-dominated slowing. Our results demonstrate that bulk properties alone cannot account for protein dynamics in crowded solutions, underscoring the need to include polymer-specific interactions and depletion theory in models of crowded environments.

cond-mat.soft↗

arXiv2025

Softness and Hydrodynamic Interactions Regulate Lipoprotein Transport in Crowded Yolk Environments

Low-density lipoproteins (LDLs) serve as nutrient reservoirs in egg yolk for embryonic development and as promising drug carriers. Both roles critically depend on their mobility in densely crowded biological environments. Under these crowded conditions, diffusion is hindered by transient confinement within dynamic cages formed by neighboring particles, driven by solvent-mediated hydrodynamic interactions and memory effects -- phenomena that have remained challenging to characterize computationally and experimentally. Here, we employ megahertz X-ray photon correlation spectroscopy to directly probe the cage dynamics of LDLs in yolk-plasma across various concentrations. We find that LDLs undergo anomalous diffusion, experiencing $\approx$ 100-fold reduction in self-diffusion at high concentrations compared to dilute solutions. This drastic slowing-down is attributed to a combination of hydrodynamic interactions, direct particle-particle interactions, and the inherent softness of LDL particles. Despite reduced dynamics, yolk-plasma remains as a liquid, yet sluggish, balancing dense packing, structural stability, and fluidity essential for controlled lipid release during embryogenesis.

cond-mat.soft↗

arXiv2024

Supercritical density fluctuations and structural heterogeneity in supercooled water-glycerol microdroplets

Recent experiments and theoretical studies strongly indicate that water exhibits a liquid-liquid phase transition (LLPT) in the supercooled domain. An open question is how the LLPT of water can affect the properties of aqueous solutions. Here, we study the structural and thermodynamic properties of supercooled glycerol-water microdroplets at dilute conditions ($χ_g=3.2~\%$ glycerol mole fraction). The combination of rapid evaporative cooling with ultrafast X-ray scattering allows us to outrun crystallization and gain access to the deeply supercooled regime down to $T=229.3$ K. We find that the density fluctuations of the glycerol-water solution or, equivalently, its isothermal compressibility, $κ_T$, increases upon cooling. This is confirmed by molecular dynamics simulations, which indicate that the presence of glycerol shifts the temperature of maximum $κ_T$ from $T=230$ K in pure water down to $T=223$ K in the solution. Our findings elucidate the interplay between the complex behavior of water, including its LLPT, and the properties of aqueous solutions at low temperatures, which can have practical consequences in cryogenic biological applications and cryopreservation techniques.

cond-mat.soft↗

arXiv2024

Coherent X-rays reveal anomalous molecular diffusion and cage effects in crowded protein solutions

Understanding protein motion within the cell is crucial for predicting reaction rates and macromolecular transport in the cytoplasm. A key question is how crowded environments affect protein dynamics through hydrodynamic and direct interactions at molecular length scales. Using megahertz X-ray Photon Correlation Spectroscopy (MHz-XPCS) at the European X-ray Free Electron Laser (EuXFEL), we investigate ferritin diffusion at microsecond time scales. Our results reveal anomalous diffusion, indicated by the non-exponential decay of the intensity autocorrelation function $g_2(q,t)$ at high concentrations. This behavior is consistent with the presence of cage-trapping in between the short- and long-time protein diffusion regimes. Modeling with the $\delta\gamma$-theory of hydrodynamically interacting colloidal spheres successfully reproduces the experimental data by including a scaling factor linked to the protein direct interactions. These findings offer new insights into the complex molecular motion in crowded protein solutions, with potential applications for optimizing ferritin-based drug delivery, where protein diffusion is the rate-limiting step.

cond-mat.soft↗